Wall clock time and date at job start Mon Mar 30 2020 03:07:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 120.00127 * 2 1 4 4 H 1.48506 * 109.46695 * 95.15314 * 3 2 1 5 5 H 1.48501 * 109.47071 * 215.14510 * 3 2 1 6 6 H 1.48490 * 109.47391 * 335.14995 * 3 2 1 7 7 C 1.37883 * 119.99581 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00115 * 1.69931 * 7 2 1 9 9 C 1.50701 * 119.99560 * 181.69367 * 7 2 1 10 10 H 1.09000 * 110.26889 * 25.29559 * 9 7 2 11 11 C 1.54345 * 110.30741 * 263.21324 * 9 7 2 12 12 C 1.54491 * 102.32836 * 214.79314 * 11 9 7 13 13 C 1.51362 * 105.21870 * 26.22983 * 12 11 9 14 14 C 1.38237 * 109.76224 * 342.88170 * 13 12 11 15 15 C 1.38459 * 119.86302 * 180.02562 * 14 13 12 16 16 C 1.38153 * 120.24252 * 359.97438 * 15 14 13 17 17 C 1.38188 * 119.94905 * 0.02562 * 16 15 14 18 18 C 1.38263 * 119.91944 * 0.02562 * 17 16 15 19 19 Cl 1.73605 * 119.90642 * 179.97438 * 18 17 16 20 20 H 0.97002 * 120.00050 * 359.97438 * 1 2 3 21 21 H 1.09001 * 110.81843 * 332.95184 * 11 9 7 22 22 H 1.09001 * 110.82166 * 96.49886 * 11 9 7 23 23 H 1.08997 * 110.22159 * 267.32550 * 12 11 9 24 24 H 1.08999 * 110.42720 * 145.24426 * 12 11 9 25 25 H 1.08003 * 119.88309 * 180.02562 * 15 14 13 26 26 H 1.08000 * 120.02389 * 180.02562 * 16 15 14 27 27 H 1.07995 * 120.04308 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.6055 1.9834 1.3945 5 1 3.4881 1.4739 -0.8060 6 1 1.3965 2.6816 -0.5883 7 6 2.0044 -1.1942 -0.0005 8 1 1.4648 -2.1291 -0.0287 9 6 3.5110 -1.1944 0.0380 10 1 3.8771 -0.2768 0.4985 11 6 4.0833 -1.3437 -1.3876 12 6 5.3542 -2.1882 -1.1461 13 6 5.0758 -2.9725 0.1181 14 6 4.0166 -2.4017 0.7987 15 6 3.5846 -2.9560 1.9917 16 6 4.2078 -4.0776 2.5038 17 6 5.2667 -4.6492 1.8244 18 6 5.7007 -4.0969 0.6335 19 17 7.0315 -4.8149 -0.2194 20 1 -0.4850 0.8401 0.0004 21 1 3.3829 -1.8743 -2.0326 22 1 4.3369 -0.3702 -1.8072 23 1 6.2175 -1.5378 -1.0052 24 1 5.5249 -2.8664 -1.9821 25 1 2.7568 -2.5105 2.5234 26 1 3.8676 -4.5073 3.4344 27 1 5.7552 -5.5257 2.2236 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238612514.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:33 Heat of formation + Delta-G solvation = -11.770704 kcal Electronic energy + Delta-G solvation = -12694.147519 eV Core-core repulsion = 10441.159740 eV Total energy + Delta-G solvation = -2252.987779 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 222.051 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.97850 -37.57395 -36.63799 -34.53979 -32.11942 -30.08097 -29.18981 -25.48134 -23.49054 -21.82980 -21.27292 -19.11979 -17.57090 -16.52345 -16.23640 -15.93739 -15.60095 -14.84559 -14.46213 -14.20731 -13.82980 -13.53565 -12.87693 -12.66952 -12.52877 -12.36368 -12.21613 -11.84737 -11.80888 -11.75397 -11.34411 -11.32014 -10.71073 -9.48986 -9.39015 -8.28512 -6.32668 0.31683 0.45043 1.22690 1.36314 1.37904 1.48544 2.35310 2.77671 3.05942 3.62837 3.86843 4.14278 4.34083 4.36250 4.49964 4.55028 4.67503 4.85955 4.98216 5.10429 5.17937 5.24554 5.38547 5.44890 5.54922 5.64712 5.88247 5.98979 6.32266 6.72097 7.31968 8.88219 Molecular weight = 222.05amu Principal moments of inertia in cm(-1) A = 0.042039 B = 0.008911 C = 0.007907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.881065 B = 3141.474258 C = 3540.506111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.015 3.985 3 Si 0.939 3.061 4 H -0.268 1.268 5 H -0.239 1.239 6 H -0.288 1.288 7 C -0.504 4.504 8 H 0.029 0.971 9 C 0.039 3.961 10 H 0.049 0.951 11 C -0.117 4.117 12 C -0.071 4.071 13 C -0.112 4.112 14 C -0.070 4.070 15 C -0.117 4.117 16 C -0.107 4.107 17 C -0.122 4.122 18 C -0.031 4.031 19 Cl -0.072 7.072 20 H 0.266 0.734 21 H 0.056 0.944 22 H 0.072 0.928 23 H 0.091 0.909 24 H 0.082 0.918 25 H 0.113 0.887 26 H 0.159 0.841 27 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.712 -6.073 1.984 15.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.182 4.182 3 Si 0.762 3.238 4 H -0.194 1.194 5 H -0.162 1.162 6 H -0.214 1.214 7 C -0.542 4.542 8 H 0.047 0.953 9 C 0.020 3.980 10 H 0.067 0.933 11 C -0.155 4.155 12 C -0.108 4.108 13 C -0.113 4.113 14 C -0.071 4.071 15 C -0.135 4.135 16 C -0.124 4.124 17 C -0.141 4.141 18 C -0.058 4.058 19 Cl -0.044 7.044 20 H 0.075 0.925 21 H 0.075 0.925 22 H 0.091 0.909 23 H 0.109 0.891 24 H 0.101 0.899 25 H 0.131 0.869 26 H 0.177 0.823 27 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 13.678 -6.030 1.894 15.068 hybrid contribution -0.422 0.746 -0.064 0.860 sum 13.256 -5.284 1.830 14.387 Atomic orbital electron populations 1.70045 1.08280 1.28106 1.52458 1.25922 0.95421 1.02867 0.94037 0.85867 0.79719 0.78667 0.79520 1.19353 1.16241 1.21419 1.21019 0.90306 0.92793 1.50071 0.95291 1.18809 0.94277 0.92454 0.92461 0.93300 1.22566 0.95542 0.99551 0.97827 1.21062 0.98563 0.97405 0.93766 1.20675 0.96433 0.95322 0.98874 1.21047 0.94073 0.97455 0.94521 1.20978 0.99862 0.96903 0.95760 1.21274 0.95367 0.94975 1.00828 1.21159 0.98096 1.01373 0.93425 1.20613 0.93411 0.95941 0.95820 1.98320 1.45784 1.82854 1.77398 0.92499 0.92515 0.90907 0.89066 0.89945 0.86868 0.82314 0.82358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.43 13.96 21.45 0.30 -58.13 15 2 C 0.01 0.83 5.47 84.66 0.46 1.30 15 3 Si 0.94 42.77 26.87 68.60 1.84 44.62 15 4 H -0.27 -11.84 7.11 99.48 0.71 -11.14 15 5 H -0.24 -9.86 6.55 99.48 0.65 -9.21 15 6 H -0.29 -13.05 7.11 99.48 0.71 -12.34 15 7 C -0.50 -28.19 8.63 25.60 0.22 -27.97 15 8 H 0.03 1.83 8.06 -2.91 -0.02 1.81 15 9 C 0.04 1.77 2.36 -11.61 -0.03 1.74 15 10 H 0.05 2.22 5.69 -2.39 -0.01 2.20 15 11 C -0.12 -4.64 6.59 31.56 0.21 -4.43 15 12 C -0.07 -2.35 6.47 30.57 0.20 -2.15 15 13 C -0.11 -4.04 6.05 -19.57 -0.12 -4.16 15 14 C -0.07 -2.92 5.60 -19.60 -0.11 -3.03 15 15 C -0.12 -4.45 9.77 22.30 0.22 -4.23 15 16 C -0.11 -3.13 10.04 22.24 0.22 -2.91 15 17 C -0.12 -3.37 9.83 22.26 0.22 -3.15 15 18 C -0.03 -0.98 6.32 22.36 0.14 -0.83 15 19 Cl -0.07 -1.90 28.71 -2.72 -0.08 -1.98 15 20 H 0.27 15.34 8.31 -92.71 -0.77 14.57 15 21 H 0.06 2.40 7.91 -2.39 -0.02 2.38 15 22 H 0.07 2.67 7.63 -2.39 -0.02 2.65 15 23 H 0.09 2.64 8.14 -2.39 -0.02 2.62 15 24 H 0.08 2.45 8.14 -2.39 -0.02 2.43 15 25 H 0.11 4.54 8.06 -2.91 -0.02 4.52 15 26 H 0.16 3.51 8.06 -2.91 -0.02 3.48 15 27 H 0.16 3.28 8.06 -2.91 -0.02 3.25 15 Total: -1.00 -62.89 245.47 4.81 -58.08 By element: Atomic # 1 Polarization: 6.13 SS G_CDS: 1.11 Total: 7.24 kcal Atomic # 6 Polarization: -51.47 SS G_CDS: 1.64 Total: -49.83 kcal Atomic # 7 Polarization: -58.43 SS G_CDS: 0.30 Total: -58.13 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 1.84 Total: 44.62 kcal Atomic # 17 Polarization: -1.90 SS G_CDS: -0.08 Total: -1.98 kcal Total: -62.89 4.81 -58.08 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238612514.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.309 kcal (2) G-P(sol) polarization free energy of solvation -62.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds