Wall clock time and date at job start Mon Mar 30 2020 02:47:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 C 1.50693 * 109.47341 * 242.91467 * 3 2 1 5 5 O 1.21345 * 119.99980 * 359.97438 * 4 3 2 6 6 C 1.46577 * 120.00445 * 179.73014 * 4 3 2 7 7 N 1.30207 * 125.06990 * 179.97438 * 6 4 3 8 8 C 1.32065 * 116.10645 * 179.77139 * 7 6 4 9 9 C 1.41237 * 122.76920 * 180.26003 * 8 7 6 10 10 H 1.08011 * 119.99818 * 174.36329 * 9 8 7 11 11 C 1.39831 * 120.00252 * 354.35490 * 9 8 7 12 12 N 1.30914 * 119.99910 * 6.20118 * 11 9 8 13 13 Si 1.86806 * 120.00099 * 186.19473 * 11 9 8 14 14 H 1.48508 * 109.46745 * 94.99125 * 13 11 9 15 15 H 1.48495 * 109.46954 * 214.98507 * 13 11 9 16 16 H 1.48492 * 109.47370 * 334.98738 * 13 11 9 17 17 C 1.38611 * 114.46173 * 0.51304 * 8 7 6 18 18 S 1.71012 * 108.82092 * 359.72493 * 17 8 7 19 19 H 1.09007 * 109.46928 * 122.91449 * 3 2 1 20 20 H 1.08998 * 109.47207 * 2.91551 * 3 2 1 21 21 H 0.97007 * 119.99930 * 179.97438 * 12 11 9 22 22 H 1.08000 * 125.59119 * 179.74972 * 17 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1101 0.6478 1.2649 5 8 2.3214 1.0678 2.0859 6 6 4.5511 0.7651 1.5062 7 7 5.0916 1.3046 2.5608 8 6 6.4117 1.3121 2.5978 9 6 7.1431 1.8564 3.6765 10 1 8.2184 1.7581 3.7041 11 6 6.4753 2.5225 4.7087 12 7 5.1666 2.5373 4.7391 13 14 7.4504 3.3913 6.0443 14 1 7.6006 4.8265 5.6934 15 1 6.7329 3.2708 7.3388 16 1 8.7928 2.7675 6.1624 17 6 7.0203 0.7469 1.4881 18 16 5.8082 0.2045 0.4105 19 1 2.9711 0.5593 -0.8628 20 1 2.9718 -1.0255 -0.0523 21 1 4.7032 2.9991 5.4554 22 1 8.0854 0.6625 1.3300 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238628966.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:02 Heat of formation + Delta-G solvation = 10.482977 kcal Electronic energy + Delta-G solvation = -11951.368443 eV Core-core repulsion = 9597.849019 eV Total energy + Delta-G solvation = -2353.519424 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 222.020 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.81227 -39.38313 -37.46168 -35.10742 -32.61955 -31.05783 -27.68931 -26.51579 -22.52254 -20.34503 -19.76872 -18.36857 -17.75304 -17.05798 -16.70293 -16.37110 -15.89954 -14.98908 -14.91273 -14.15357 -13.95258 -13.75864 -13.55960 -13.35853 -12.92838 -12.63260 -12.63088 -12.25523 -11.62075 -11.20620 -11.18098 -9.96445 -9.92828 -9.41498 -8.43676 -6.39156 -0.36604 0.90389 1.19927 1.38353 1.48102 1.51355 1.54168 1.61078 1.74104 2.23899 2.44809 2.71429 3.04957 3.45914 4.18895 4.42182 4.45808 4.67220 5.06028 5.22699 5.34700 6.11561 6.38622 6.49762 6.51780 6.87574 7.65521 8.44509 Molecular weight = 222.02amu Principal moments of inertia in cm(-1) A = 0.038748 B = 0.008327 C = 0.006883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.439219 B = 3361.594561 C = 4066.783373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.476 5.476 2 C 0.242 3.758 3 C -0.049 4.049 4 C 0.440 3.560 5 O -0.473 6.473 6 C -0.076 4.076 7 N -0.402 5.402 8 C 0.180 3.820 9 C -0.474 4.474 10 H 0.091 0.909 11 C 0.022 3.978 12 N -0.790 5.790 13 Si 0.988 3.012 14 H -0.265 1.265 15 H -0.274 1.274 16 H -0.251 1.251 17 C -0.438 4.438 18 S 0.178 5.822 19 H 0.195 0.805 20 H 0.195 0.805 21 H 0.277 0.723 22 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.431 -4.458 -9.100 10.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.153 5.153 2 C -0.076 4.076 3 C -0.088 4.088 4 C 0.312 3.688 5 O -0.347 6.347 6 C -0.350 4.350 7 N -0.123 5.123 8 C 0.053 3.947 9 C -0.509 4.509 10 H 0.110 0.890 11 C -0.196 4.196 12 N -0.415 5.415 13 Si 0.809 3.191 14 H -0.190 1.190 15 H -0.199 1.199 16 H -0.174 1.174 17 C -0.579 4.579 18 S 0.428 5.572 19 H 0.212 0.788 20 H 0.212 0.788 21 H 0.087 0.913 22 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -0.276 -4.455 -9.124 10.158 hybrid contribution 1.400 0.968 1.766 2.453 sum 1.124 -3.487 -7.358 8.220 Atomic orbital electron populations 1.81187 1.14426 1.10214 1.09455 1.28749 0.94937 0.91931 0.91980 1.19881 0.81225 1.09280 0.98404 1.21799 0.84601 0.75203 0.87170 1.90636 1.57553 1.39380 1.47090 1.28100 1.00357 1.09236 0.97352 1.67240 1.12053 1.12621 1.20370 1.18414 0.86079 0.95372 0.94868 1.19376 0.94967 1.32744 1.03778 0.89047 1.26948 0.95863 0.95921 1.00899 1.70211 1.09676 1.31717 1.29848 0.85100 0.79045 0.78645 0.76339 1.19009 1.19918 1.17394 1.26452 1.04061 1.24773 1.02617 1.81588 0.95771 1.57985 1.21845 0.78816 0.78805 0.91310 0.82373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -15.44 18.54 20.01 0.37 -15.07 14 2 C 0.24 6.24 14.67 89.44 1.31 7.56 14 3 C -0.05 -0.87 5.60 28.04 0.16 -0.72 14 4 C 0.44 15.06 7.11 27.86 0.20 15.26 14 5 O -0.47 -21.40 16.73 -3.23 -0.05 -21.46 14 6 C -0.08 -3.09 7.35 87.11 0.64 -2.45 14 7 N -0.40 -21.33 8.39 -183.71 -1.54 -22.88 14 8 C 0.18 9.47 6.46 39.93 0.26 9.73 14 9 C -0.47 -25.51 9.24 23.39 0.22 -25.29 14 10 H 0.09 4.58 7.85 -2.91 -0.02 4.56 14 11 C 0.02 1.17 5.49 85.22 0.47 1.64 14 12 N -0.79 -44.89 11.72 21.81 0.26 -44.64 14 13 Si 0.99 39.35 29.56 68.60 2.03 41.38 14 14 H -0.27 -10.24 7.11 99.48 0.71 -9.53 14 15 H -0.27 -10.67 7.11 99.48 0.71 -9.96 14 16 H -0.25 -9.38 7.11 99.48 0.71 -8.67 14 17 C -0.44 -18.77 11.03 67.91 0.75 -18.02 14 18 S 0.18 5.53 22.60 -56.49 -1.28 4.25 14 19 H 0.20 1.74 8.14 -2.38 -0.02 1.72 14 20 H 0.20 1.74 8.14 -2.39 -0.02 1.72 14 21 H 0.28 14.58 8.30 -92.70 -0.77 13.81 14 22 H 0.16 6.25 8.06 -2.91 -0.02 6.23 14 Total: -1.00 -75.87 236.30 5.05 -70.82 By element: Atomic # 1 Polarization: -1.38 SS G_CDS: 1.27 Total: -0.11 kcal Atomic # 6 Polarization: -16.29 SS G_CDS: 4.00 Total: -12.30 kcal Atomic # 7 Polarization: -81.67 SS G_CDS: -0.92 Total: -82.58 kcal Atomic # 8 Polarization: -21.40 SS G_CDS: -0.05 Total: -21.46 kcal Atomic # 14 Polarization: 39.35 SS G_CDS: 2.03 Total: 41.38 kcal Atomic # 16 Polarization: 5.53 SS G_CDS: -1.28 Total: 4.25 kcal Total: -75.87 5.05 -70.82 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238628966.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.304 kcal (2) G-P(sol) polarization free energy of solvation -75.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.821 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds