Wall clock time and date at job start Mon Mar 30 2020 02:48:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13606 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 C 1.50702 * 109.46832 * 180.41132 * 3 2 1 5 5 O 1.21413 * 120.00178 * 0.02562 * 4 3 2 6 6 C 1.46216 * 120.00103 * 179.72483 * 4 3 2 7 7 N 1.31281 * 125.13076 * 0.30600 * 6 4 3 8 8 C 1.29279 * 117.67918 * 179.97438 * 7 6 4 9 9 C 1.39502 * 114.86325 * 359.97438 * 8 7 6 10 10 C 1.39492 * 126.13162 * 180.02562 * 9 8 7 11 11 H 1.08003 * 119.99762 * 359.97438 * 10 9 8 12 12 C 1.40674 * 120.00227 * 179.97438 * 10 9 8 13 13 N 1.30455 * 119.99857 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 119.99990 * 179.97438 * 12 10 9 15 15 H 1.48506 * 109.47176 * 90.00181 * 14 12 10 16 16 H 1.48503 * 109.47387 * 210.00289 * 14 12 10 17 17 H 1.48500 * 109.47193 * 330.00165 * 14 12 10 18 18 S 1.76085 * 125.13675 * 179.97438 * 6 4 3 19 19 H 1.08998 * 109.46965 * 60.41800 * 3 2 1 20 20 H 1.08994 * 109.47570 * 300.41066 * 3 2 1 21 21 H 1.07994 * 122.56914 * 179.97438 * 8 7 6 22 22 H 0.97007 * 119.99829 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 6 3.1097 1.4217 0.0102 5 8 2.3203 2.3441 0.0173 6 6 4.5471 1.6896 0.0182 7 7 5.4865 0.7725 0.0116 8 6 6.7159 1.1722 0.0198 9 6 6.8824 2.5572 0.0343 10 6 8.0991 3.2393 0.0448 11 1 9.0275 2.6876 0.0423 12 6 8.1168 4.6459 0.0586 13 7 6.9954 5.3123 0.0620 14 14 9.7462 5.5593 0.0733 15 1 10.1830 5.8150 -1.3228 16 1 9.5826 6.8521 0.7855 17 1 10.7684 4.7369 0.7690 18 16 5.2795 3.2908 0.0298 19 1 2.9716 -0.5065 -0.8937 20 1 2.9717 -0.5193 0.8862 21 1 7.5502 0.4865 0.0157 22 1 7.0076 6.2823 0.0719 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238629000.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:00 Heat of formation + Delta-G solvation = -17.990417 kcal Electronic energy + Delta-G solvation = -11785.170301 eV Core-core repulsion = 9430.416178 eV Total energy + Delta-G solvation = -2354.754123 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 222.020 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.19667 -38.95895 -37.38401 -36.36867 -32.40316 -31.33913 -28.04775 -25.35460 -22.52340 -20.65445 -19.51260 -18.48306 -17.58678 -17.28221 -16.40642 -16.04501 -15.49161 -14.81465 -14.76997 -14.25203 -13.94550 -13.82168 -13.76268 -13.40950 -13.08565 -13.03935 -12.51927 -12.03210 -11.59614 -11.31308 -10.85450 -9.97102 -9.93387 -9.27562 -9.05414 -6.80709 0.05793 1.24903 1.32574 1.38040 1.61138 1.69307 1.69917 1.74934 1.99121 2.14115 2.51162 2.94955 3.06607 3.59748 4.28329 4.54474 4.63137 4.65787 4.94735 5.07792 5.55569 5.82552 6.11022 6.20327 6.51180 6.79552 7.60690 7.70811 Molecular weight = 222.02amu Principal moments of inertia in cm(-1) A = 0.077660 B = 0.006825 C = 0.006295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 360.459572 B = 4101.466149 C = 4446.769726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.483 5.483 2 C 0.244 3.756 3 C -0.037 4.037 4 C 0.445 3.555 5 O -0.543 6.543 6 C -0.317 4.317 7 N -0.373 5.373 8 C -0.133 4.133 9 C -0.034 4.034 10 C -0.308 4.308 11 H 0.140 0.860 12 C 0.001 3.999 13 N -0.754 5.754 14 Si 1.023 2.977 15 H -0.254 1.254 16 H -0.266 1.266 17 H -0.238 1.238 18 S 0.059 5.941 19 H 0.168 0.832 20 H 0.168 0.832 21 H 0.172 0.828 22 H 0.320 0.680 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.455 -1.494 0.018 8.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.161 5.161 2 C -0.073 4.073 3 C -0.078 4.078 4 C 0.330 3.670 5 O -0.426 6.426 6 C -0.565 4.565 7 N -0.087 5.087 8 C -0.303 4.303 9 C -0.159 4.159 10 C -0.346 4.346 11 H 0.157 0.843 12 C -0.224 4.224 13 N -0.378 5.378 14 Si 0.839 3.161 15 H -0.178 1.178 16 H -0.190 1.190 17 H -0.160 1.160 18 S 0.311 5.689 19 H 0.185 0.815 20 H 0.185 0.815 21 H 0.189 0.811 22 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 5.228 -0.427 0.021 5.245 hybrid contribution 1.384 -0.010 -0.005 1.384 sum 6.612 -0.437 0.016 6.626 Atomic orbital electron populations 1.81102 1.14169 1.10051 1.10796 1.29081 0.95190 0.91392 0.91610 1.19592 0.80170 0.97375 1.10680 1.20719 0.85474 0.89917 0.70925 1.90527 1.58086 1.49108 1.44902 1.26118 0.96803 0.94086 1.39538 1.65306 1.00576 1.37307 1.05491 1.22085 0.93649 0.91957 1.22642 1.24095 0.97276 0.96695 0.97813 1.20362 0.94156 0.92280 1.27801 0.84256 1.27781 1.04091 0.98801 0.91775 1.68966 1.31375 1.12863 1.24579 0.84523 0.73946 0.77252 0.80379 1.17843 1.18985 1.16047 1.85359 0.98699 1.08135 1.76664 0.81522 0.81529 0.81101 0.86628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -18.73 18.54 20.01 0.37 -18.36 14 2 C 0.24 8.36 14.67 89.44 1.31 9.67 14 3 C -0.04 -1.09 5.90 28.04 0.17 -0.93 14 4 C 0.44 18.96 7.10 27.76 0.20 19.16 14 5 O -0.54 -27.02 16.59 -3.44 -0.06 -27.07 14 6 C -0.32 -14.89 7.36 86.85 0.64 -14.25 14 7 N -0.37 -16.46 10.23 -187.70 -1.92 -18.38 14 8 C -0.13 -5.80 11.36 85.37 0.97 -4.83 14 9 C -0.03 -1.57 6.26 22.88 0.14 -1.42 14 10 C -0.31 -12.44 9.33 23.17 0.22 -12.22 14 11 H 0.14 4.73 7.86 -2.91 -0.02 4.70 14 12 C 0.00 0.04 5.51 85.49 0.47 0.51 14 13 N -0.75 -31.74 10.73 21.95 0.24 -31.50 14 14 Si 1.02 26.81 29.57 68.60 2.03 28.84 14 15 H -0.25 -6.51 7.11 99.48 0.71 -5.81 14 16 H -0.27 -6.89 7.11 99.48 0.71 -6.18 14 17 H -0.24 -5.73 7.11 99.48 0.71 -5.03 14 18 S 0.06 2.97 20.25 -56.49 -1.14 1.82 14 19 H 0.17 3.95 8.14 -2.39 -0.02 3.93 14 20 H 0.17 3.96 8.14 -2.39 -0.02 3.94 14 21 H 0.17 6.34 8.06 -2.91 -0.02 6.31 14 22 H 0.32 11.79 8.29 -92.70 -0.77 11.02 14 Total: -1.00 -60.95 235.19 4.89 -56.06 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: 1.27 Total: 12.90 kcal Atomic # 6 Polarization: -8.42 SS G_CDS: 4.11 Total: -4.31 kcal Atomic # 7 Polarization: -66.93 SS G_CDS: -1.31 Total: -68.25 kcal Atomic # 8 Polarization: -27.02 SS G_CDS: -0.06 Total: -27.07 kcal Atomic # 14 Polarization: 26.81 SS G_CDS: 2.03 Total: 28.84 kcal Atomic # 16 Polarization: 2.97 SS G_CDS: -1.14 Total: 1.82 kcal Total: -60.95 4.89 -56.06 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238629000.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.069 kcal (2) G-P(sol) polarization free energy of solvation -60.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds