Wall clock time and date at job start Mon Mar 30 2020 02:38:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47187 * 2 1 4 4 H 1.08998 * 109.47331 * 305.64104 * 3 2 1 5 5 C 1.50701 * 109.47178 * 185.63689 * 3 2 1 6 6 H 1.08002 * 119.99919 * 239.99825 * 5 3 2 7 7 C 1.37875 * 120.00108 * 60.00194 * 5 3 2 8 8 N 1.31521 * 119.99758 * 0.02562 * 7 5 3 9 9 Si 1.86793 * 120.00082 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47201 * 90.00297 * 9 7 5 11 11 H 1.48503 * 109.47220 * 209.99861 * 9 7 5 12 12 H 1.48500 * 109.47459 * 330.00131 * 9 7 5 13 13 N 1.46904 * 109.46889 * 65.63884 * 3 2 1 14 14 C 1.46906 * 110.99978 * 205.98209 * 13 3 2 15 15 H 1.08997 * 112.78115 * 23.99253 * 14 13 3 16 16 C 1.53640 * 113.52947 * 253.05901 * 14 13 3 17 17 C 1.53720 * 87.53458 * 220.75757 * 16 14 13 18 18 H 1.08992 * 117.33942 * 144.16853 * 17 16 14 19 19 C 1.57245 * 113.27330 * 284.50721 * 17 16 14 20 20 C 1.51083 * 105.00812 * 115.84479 * 19 17 16 21 21 C 1.30486 * 111.12073 * 343.45796 * 20 19 17 22 22 C 1.51101 * 111.18992 * 359.97438 * 21 20 19 23 23 H 1.09002 * 114.94378 * 146.63734 * 22 21 20 24 24 H 1.08995 * 109.46803 * 174.11237 * 1 2 3 25 25 H 1.08993 * 109.47028 * 294.11782 * 1 2 3 26 26 H 1.09000 * 109.46721 * 54.11601 * 1 2 3 27 27 H 1.09000 * 109.47304 * 240.00147 * 2 1 3 28 28 H 1.09000 * 109.47383 * 120.00209 * 2 1 3 29 29 H 0.96995 * 119.99707 * 180.02562 * 8 7 5 30 30 H 1.00900 * 110.99667 * 329.93607 * 13 3 2 31 31 H 1.09003 * 113.52906 * 335.40751 * 16 14 13 32 32 H 1.08993 * 113.53233 * 106.05072 * 16 14 13 33 33 H 1.09002 * 110.33800 * 356.92404 * 19 17 16 34 34 H 1.08999 * 110.22984 * 234.71493 * 19 17 16 35 35 H 1.08004 * 124.43868 * 163.47220 * 20 19 17 36 36 H 1.08000 * 124.40471 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5966 1.9847 -0.8351 5 6 3.5405 1.4448 -0.1396 6 1 4.1539 1.8865 0.6318 7 6 4.1303 0.8831 -1.2520 8 7 3.3833 0.3456 -2.1916 9 14 5.9902 0.8865 -1.4253 10 1 6.5466 -0.3472 -0.8142 11 1 6.3531 0.9330 -2.8646 12 1 6.5495 2.0765 -0.7351 13 7 1.6646 2.0946 1.2617 14 6 1.5613 3.5501 1.0917 15 1 1.3632 3.8416 0.0603 16 6 2.7193 4.3267 1.7370 17 6 1.6794 5.3575 2.2052 18 1 1.8377 5.8215 3.1786 19 6 1.1754 6.2996 1.0515 20 6 -0.2950 5.9852 0.9040 21 6 -0.5941 4.8536 1.4807 22 6 0.6260 4.2219 2.1096 23 1 0.4332 3.6593 3.0231 24 1 -0.3633 -1.0222 -0.1054 25 1 -0.3633 0.4199 0.9379 26 1 -0.3633 0.6024 -0.8326 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 3.7982 -0.0499 -2.9741 30 1 0.8050 1.7110 1.6251 31 1 3.1999 3.7908 2.5556 32 1 3.4326 4.7240 1.0150 33 1 1.7051 6.0800 0.1245 34 1 1.3139 7.3442 1.3303 35 1 -1.0054 6.6146 0.3885 36 1 -1.5846 4.4239 1.5046 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251377469.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:33 Heat of formation + Delta-G solvation = 36.798326 kcal Electronic energy + Delta-G solvation = -15484.514069 eV Core-core repulsion = 13162.308087 eV Total energy + Delta-G solvation = -2322.205981 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 221.148 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.26085 -35.83923 -32.95819 -31.72950 -29.99808 -27.91720 -26.20633 -24.27024 -23.00157 -21.79660 -19.58832 -18.69856 -17.97755 -16.29885 -15.95856 -15.00861 -14.65180 -13.70998 -13.67817 -13.15284 -12.64050 -12.58174 -12.12993 -11.84539 -11.69390 -11.36202 -11.17212 -10.89451 -10.74034 -10.57538 -10.51326 -10.39053 -9.91092 -9.71831 -9.59537 -9.44798 -9.01139 -8.54723 -8.28768 -7.16818 -5.91425 -3.94668 2.44728 3.35328 3.41606 3.45719 4.49089 4.65173 4.84148 5.14217 5.35073 5.39618 5.43243 5.56401 5.72438 5.76282 5.95634 5.98959 6.06641 6.18992 6.20527 6.27371 6.29178 6.44535 6.63135 6.70412 6.86043 6.86585 6.94071 7.12928 7.14726 7.23979 7.57763 7.82796 7.98771 8.40486 8.45893 8.83104 9.13711 9.69906 11.14109 Molecular weight = 221.15amu Principal moments of inertia in cm(-1) A = 0.027941 B = 0.008994 C = 0.007499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.862342 B = 3112.465857 C = 3732.914383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.127 4.127 3 C 0.218 3.782 4 H 0.001 0.999 5 C -0.486 4.486 6 H 0.062 0.938 7 C 0.053 3.947 8 N -0.898 5.898 9 Si 0.893 3.107 10 H -0.282 1.282 11 H -0.289 1.289 12 H -0.275 1.275 13 N -0.676 5.676 14 C 0.097 3.903 15 H 0.064 0.936 16 C -0.108 4.108 17 C -0.119 4.119 18 H 0.088 0.912 19 C -0.086 4.086 20 C -0.173 4.173 21 C -0.153 4.153 22 C -0.103 4.103 23 H 0.096 0.904 24 H 0.036 0.964 25 H 0.035 0.965 26 H 0.041 0.959 27 H 0.099 0.901 28 H 0.040 0.960 29 H 0.258 0.742 30 H 0.318 0.682 31 H 0.086 0.914 32 H 0.062 0.938 33 H 0.079 0.921 34 H 0.063 0.937 35 H 0.119 0.881 36 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.011 7.775 6.069 11.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.166 4.166 3 C 0.111 3.889 4 H 0.018 0.982 5 C -0.525 4.525 6 H 0.080 0.920 7 C -0.147 4.147 8 N -0.539 5.539 9 Si 0.722 3.278 10 H -0.208 1.208 11 H -0.215 1.215 12 H -0.200 1.200 13 N -0.307 5.307 14 C -0.014 4.014 15 H 0.082 0.918 16 C -0.146 4.146 17 C -0.138 4.138 18 H 0.107 0.893 19 C -0.123 4.123 20 C -0.191 4.191 21 C -0.171 4.171 22 C -0.122 4.122 23 H 0.114 0.886 24 H 0.055 0.945 25 H 0.054 0.946 26 H 0.060 0.940 27 H 0.117 0.883 28 H 0.059 0.941 29 H 0.068 0.932 30 H 0.136 0.864 31 H 0.104 0.896 32 H 0.081 0.919 33 H 0.097 0.903 34 H 0.082 0.918 35 H 0.137 0.863 36 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -5.334 7.694 6.110 11.180 hybrid contribution 0.006 -0.038 -0.774 0.775 sum -5.328 7.656 5.335 10.746 Atomic orbital electron populations 1.21872 0.99662 0.99613 0.99514 1.21787 0.91190 1.00572 1.03010 1.19242 0.95497 0.89889 0.84316 0.98150 1.21220 0.91294 1.35933 1.04068 0.92024 1.24965 0.97954 0.95856 0.95943 1.69878 1.34549 1.39823 1.09619 0.86574 0.86030 0.78359 0.76877 1.20844 1.21525 1.19997 1.60847 1.36042 1.01447 1.32336 1.22752 0.93611 0.89187 0.95837 0.91815 1.22844 0.96125 0.95126 1.00500 1.23895 0.97719 0.94282 0.97898 0.89346 1.21644 0.93280 0.98854 0.98482 1.23202 0.96806 0.98224 1.00831 1.23202 0.98341 0.96239 0.99308 1.22925 0.91804 0.98036 0.99454 0.88592 0.94460 0.94640 0.93957 0.88300 0.94114 0.93204 0.86353 0.89595 0.91882 0.90255 0.91826 0.86277 0.86654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.93 9.64 37.16 0.36 -2.58 16 2 C -0.13 -3.03 5.35 -26.73 -0.14 -3.17 16 3 C 0.22 5.46 2.02 -68.86 -0.14 5.32 16 4 H 0.00 0.03 7.44 -51.93 -0.39 -0.36 16 5 C -0.49 -13.46 8.73 -34.44 -0.30 -13.76 16 6 H 0.06 1.74 7.81 -52.49 -0.41 1.33 16 7 C 0.05 1.47 5.29 -17.82 -0.09 1.38 16 8 N -0.90 -25.81 11.29 55.43 0.63 -25.18 16 9 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 10 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 12 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 13 N -0.68 -14.41 6.35 -100.22 -0.64 -15.05 16 14 C 0.10 1.85 3.16 -67.02 -0.21 1.64 16 15 H 0.06 1.36 6.82 -51.93 -0.35 1.00 16 16 C -0.11 -1.90 7.38 -26.02 -0.19 -2.09 16 17 C -0.12 -1.75 5.53 -86.78 -0.48 -2.23 16 18 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 19 C -0.09 -1.18 6.06 -25.39 -0.15 -1.33 16 20 C -0.17 -2.32 10.70 -35.69 -0.38 -2.70 16 21 C -0.15 -2.18 10.26 -35.69 -0.37 -2.54 16 22 C -0.10 -1.61 4.44 -90.06 -0.40 -2.01 16 23 H 0.10 1.45 8.14 -51.93 -0.42 1.03 16 24 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.03 0.62 6.66 -51.93 -0.35 0.28 16 26 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.10 2.65 5.94 -51.93 -0.31 2.34 16 28 H 0.04 0.97 8.14 -51.93 -0.42 0.54 16 29 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 30 H 0.32 6.26 6.40 -39.29 -0.25 6.01 16 31 H 0.09 1.56 8.14 -51.93 -0.42 1.13 16 32 H 0.06 1.15 8.13 -51.93 -0.42 0.73 16 33 H 0.08 1.18 7.56 -51.93 -0.39 0.78 16 34 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.12 1.36 8.06 -52.48 -0.42 0.94 16 36 H 0.12 1.48 8.06 -52.49 -0.42 1.05 16 LS Contribution 285.25 15.07 4.30 4.30 Total: -1.00 -28.20 285.25 -9.05 -37.25 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: -5.81 Total: 6.06 kcal Atomic # 6 Polarization: -21.57 SS G_CDS: -2.50 Total: -24.07 kcal Atomic # 7 Polarization: -40.22 SS G_CDS: -0.01 Total: -40.23 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -28.20 -9.05 -37.25 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251377469.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.047 kcal (2) G-P(sol) polarization free energy of solvation -28.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.248 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds