Wall clock time and date at job start Mon Mar 30 2020 02:38:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47187 * 2 1 4 4 H 1.08998 * 109.47331 * 305.64104 * 3 2 1 5 5 C 1.50701 * 109.47178 * 185.63689 * 3 2 1 6 6 H 1.08002 * 119.99919 * 239.99825 * 5 3 2 7 7 C 1.37875 * 120.00108 * 60.00194 * 5 3 2 8 8 N 1.31521 * 119.99758 * 0.02562 * 7 5 3 9 9 Si 1.86793 * 120.00082 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47201 * 90.00297 * 9 7 5 11 11 H 1.48503 * 109.47220 * 209.99861 * 9 7 5 12 12 H 1.48500 * 109.47459 * 330.00131 * 9 7 5 13 13 N 1.46904 * 109.46889 * 65.63884 * 3 2 1 14 14 C 1.46906 * 110.99978 * 205.98209 * 13 3 2 15 15 H 1.08997 * 112.78115 * 23.99253 * 14 13 3 16 16 C 1.53640 * 113.52947 * 253.05901 * 14 13 3 17 17 C 1.53720 * 87.53458 * 220.75757 * 16 14 13 18 18 H 1.08992 * 117.33942 * 144.16853 * 17 16 14 19 19 C 1.57245 * 113.27330 * 284.50721 * 17 16 14 20 20 C 1.51083 * 105.00812 * 115.84479 * 19 17 16 21 21 C 1.30486 * 111.12073 * 343.45796 * 20 19 17 22 22 C 1.51101 * 111.18992 * 359.97438 * 21 20 19 23 23 H 1.09002 * 114.94378 * 146.63734 * 22 21 20 24 24 H 1.08995 * 109.46803 * 174.11237 * 1 2 3 25 25 H 1.08993 * 109.47028 * 294.11782 * 1 2 3 26 26 H 1.09000 * 109.46721 * 54.11601 * 1 2 3 27 27 H 1.09000 * 109.47304 * 240.00147 * 2 1 3 28 28 H 1.09000 * 109.47383 * 120.00209 * 2 1 3 29 29 H 0.96995 * 119.99707 * 180.02562 * 8 7 5 30 30 H 1.00900 * 110.99667 * 329.93607 * 13 3 2 31 31 H 1.09003 * 113.52906 * 335.40751 * 16 14 13 32 32 H 1.08993 * 113.53233 * 106.05072 * 16 14 13 33 33 H 1.09002 * 110.33800 * 356.92404 * 19 17 16 34 34 H 1.08999 * 110.22984 * 234.71493 * 19 17 16 35 35 H 1.08004 * 124.43868 * 163.47220 * 20 19 17 36 36 H 1.08000 * 124.40471 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5966 1.9847 -0.8351 5 6 3.5405 1.4448 -0.1396 6 1 4.1539 1.8865 0.6318 7 6 4.1303 0.8831 -1.2520 8 7 3.3833 0.3456 -2.1916 9 14 5.9902 0.8865 -1.4253 10 1 6.5466 -0.3472 -0.8142 11 1 6.3531 0.9330 -2.8646 12 1 6.5495 2.0765 -0.7351 13 7 1.6646 2.0946 1.2617 14 6 1.5613 3.5501 1.0917 15 1 1.3632 3.8416 0.0603 16 6 2.7193 4.3267 1.7370 17 6 1.6794 5.3575 2.2052 18 1 1.8377 5.8215 3.1786 19 6 1.1754 6.2996 1.0515 20 6 -0.2950 5.9852 0.9040 21 6 -0.5941 4.8536 1.4807 22 6 0.6260 4.2219 2.1096 23 1 0.4332 3.6593 3.0231 24 1 -0.3633 -1.0222 -0.1054 25 1 -0.3633 0.4199 0.9379 26 1 -0.3633 0.6024 -0.8326 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 3.7982 -0.0499 -2.9741 30 1 0.8050 1.7110 1.6251 31 1 3.1999 3.7908 2.5556 32 1 3.4326 4.7240 1.0150 33 1 1.7051 6.0800 0.1245 34 1 1.3139 7.3442 1.3303 35 1 -1.0054 6.6146 0.3885 36 1 -1.5846 4.4239 1.5046 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251377469.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:33 Heat of formation + Delta-G solvation = 20.744560 kcal Electronic energy + Delta-G solvation = -15485.210212 eV Core-core repulsion = 13162.308087 eV Total energy + Delta-G solvation = -2322.902125 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 221.148 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.55012 -37.65942 -34.55089 -33.58882 -31.57424 -29.26866 -28.07992 -25.58440 -24.82345 -23.31009 -21.48971 -19.85031 -19.32560 -18.32532 -17.37980 -16.64114 -16.35171 -15.55108 -15.21820 -14.60129 -14.51481 -13.95398 -13.54368 -13.46141 -13.13920 -12.89674 -12.81960 -12.70039 -12.48251 -12.09589 -11.96606 -11.91723 -11.76119 -11.50381 -11.13279 -11.04883 -10.91648 -10.40738 -9.74136 -8.96775 -8.05237 -6.16499 1.35883 1.40452 1.41030 1.51443 2.44241 3.19326 3.44979 3.58676 3.84809 3.93498 4.13821 4.35446 4.43858 4.49052 4.52434 4.56733 4.69309 4.75343 4.86553 4.90328 4.92533 5.08097 5.09468 5.18936 5.23993 5.37022 5.40526 5.60384 5.61831 5.65865 5.78183 5.91603 6.07289 6.39710 6.57682 6.97908 7.03777 7.52312 8.98065 Molecular weight = 221.15amu Principal moments of inertia in cm(-1) A = 0.027941 B = 0.008994 C = 0.007499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.862342 B = 3112.465857 C = 3732.914383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.123 4.123 3 C 0.226 3.774 4 H -0.038 1.038 5 C -0.503 4.503 6 H 0.050 0.950 7 C 0.006 3.994 8 N -0.922 5.922 9 Si 0.954 3.046 10 H -0.276 1.276 11 H -0.285 1.285 12 H -0.272 1.272 13 N -0.674 5.674 14 C 0.084 3.916 15 H 0.035 0.965 16 C -0.112 4.112 17 C -0.104 4.104 18 H 0.114 0.886 19 C -0.090 4.090 20 C -0.165 4.165 21 C -0.169 4.169 22 C -0.093 4.093 23 H 0.105 0.895 24 H 0.057 0.943 25 H 0.058 0.942 26 H 0.033 0.967 27 H 0.067 0.933 28 H 0.037 0.963 29 H 0.259 0.741 30 H 0.328 0.672 31 H 0.080 0.920 32 H 0.046 0.954 33 H 0.061 0.939 34 H 0.089 0.911 35 H 0.143 0.857 36 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.680 8.749 7.270 13.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.162 4.162 3 C 0.118 3.882 4 H -0.020 1.020 5 C -0.542 4.542 6 H 0.069 0.931 7 C -0.191 4.191 8 N -0.563 5.563 9 Si 0.780 3.220 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.196 1.196 13 N -0.305 5.305 14 C -0.026 4.026 15 H 0.053 0.947 16 C -0.151 4.151 17 C -0.123 4.123 18 H 0.132 0.868 19 C -0.127 4.127 20 C -0.183 4.183 21 C -0.187 4.187 22 C -0.112 4.112 23 H 0.123 0.877 24 H 0.076 0.924 25 H 0.077 0.923 26 H 0.052 0.948 27 H 0.085 0.915 28 H 0.056 0.944 29 H 0.068 0.932 30 H 0.147 0.853 31 H 0.098 0.902 32 H 0.065 0.935 33 H 0.080 0.920 34 H 0.108 0.892 35 H 0.161 0.839 36 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -6.012 8.675 7.325 12.848 hybrid contribution 0.225 -0.318 -1.166 1.229 sum -5.787 8.358 6.159 11.886 Atomic orbital electron populations 1.21732 0.96299 1.01046 1.00423 1.21618 0.94236 0.99127 1.01185 1.18987 0.94095 0.90525 0.84610 1.02004 1.21466 0.92780 1.35965 1.04004 0.93136 1.25694 1.02190 0.95563 0.95684 1.70011 1.36121 1.40245 1.09921 0.85623 0.80987 0.78491 0.76926 1.20163 1.21052 1.19642 1.60766 1.36758 1.02855 1.30165 1.22805 0.96369 0.87894 0.95542 0.94699 1.22821 0.96116 0.96269 0.99878 1.23870 0.95338 0.93862 0.99227 0.86796 1.21697 0.93458 1.00146 0.97365 1.23474 0.96796 0.98171 0.99816 1.23304 0.98519 0.96655 1.00240 1.22815 0.92341 0.97686 0.98355 0.87723 0.92378 0.92295 0.94790 0.91497 0.94413 0.93203 0.85307 0.90179 0.93519 0.92042 0.89243 0.83892 0.85099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.29 9.64 71.98 0.69 -4.59 16 2 C -0.12 -5.94 5.35 30.59 0.16 -5.78 16 3 C 0.23 11.67 2.02 44.17 0.09 11.76 16 4 H -0.04 -2.19 7.44 -2.39 -0.02 -2.21 16 5 C -0.50 -28.63 8.73 25.60 0.22 -28.41 16 6 H 0.05 2.92 7.81 -2.91 -0.02 2.89 16 7 C 0.01 0.35 5.29 84.65 0.45 0.80 16 8 N -0.92 -54.28 11.29 21.45 0.24 -54.04 16 9 Si 0.95 45.14 29.54 68.60 2.03 47.17 16 10 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 11 H -0.28 -13.20 7.11 99.48 0.71 -12.50 16 12 H -0.27 -12.60 7.11 99.48 0.71 -11.90 16 13 N -0.67 -29.02 6.35 -471.00 -2.99 -32.01 16 14 C 0.08 3.25 3.16 45.36 0.14 3.39 16 15 H 0.04 1.55 6.82 -2.39 -0.02 1.53 16 16 C -0.11 -3.98 7.38 31.05 0.23 -3.75 16 17 C -0.10 -2.86 5.53 -8.31 -0.05 -2.90 16 18 H 0.11 2.60 8.14 -2.39 -0.02 2.58 16 19 C -0.09 -2.29 6.06 31.46 0.19 -2.10 16 20 C -0.16 -4.01 10.70 26.30 0.28 -3.73 16 21 C -0.17 -4.43 10.26 26.30 0.27 -4.16 16 22 C -0.09 -2.75 4.44 -10.43 -0.05 -2.79 16 23 H 0.10 2.91 8.14 -2.39 -0.02 2.89 16 24 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 25 H 0.06 1.97 6.66 -2.39 -0.02 1.95 16 26 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.07 3.68 5.94 -2.39 -0.01 3.66 16 28 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 29 H 0.26 14.53 8.31 -92.71 -0.77 13.76 16 30 H 0.33 12.67 6.40 -89.69 -0.57 12.10 16 31 H 0.08 2.90 8.14 -2.39 -0.02 2.88 16 32 H 0.05 1.76 8.13 -2.39 -0.02 1.74 16 33 H 0.06 1.81 7.56 -2.39 -0.02 1.79 16 34 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.14 2.78 8.06 -2.91 -0.02 2.76 16 36 H 0.13 2.99 8.06 -2.91 -0.02 2.97 16 Total: -1.00 -61.76 285.25 2.39 -59.37 By element: Atomic # 1 Polarization: 21.30 SS G_CDS: 0.47 Total: 21.77 kcal Atomic # 6 Polarization: -44.90 SS G_CDS: 2.64 Total: -42.26 kcal Atomic # 7 Polarization: -83.30 SS G_CDS: -2.75 Total: -86.05 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.17 kcal Total: -61.76 2.39 -59.37 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251377469.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.116 kcal (2) G-P(sol) polarization free energy of solvation -61.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.371 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds