Wall clock time and date at job start Mon Mar 30 2020 02:48:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30757 * 1 3 3 Si 1.86797 * 119.99850 * 2 1 4 4 H 1.48502 * 109.47480 * 274.98600 * 3 2 1 5 5 H 1.48499 * 109.47199 * 34.98610 * 3 2 1 6 6 H 1.48499 * 109.47275 * 154.98468 * 3 2 1 7 7 C 1.40169 * 120.00117 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99765 * 186.32036 * 7 2 1 9 9 C 1.40162 * 120.00435 * 6.31674 * 7 2 1 10 10 C 1.39554 * 127.75335 * 173.79449 * 9 7 2 11 11 C 1.37499 * 113.97916 * 179.97438 * 10 9 7 12 12 C 1.48480 * 120.86482 * 179.97438 * 11 10 9 13 13 C 1.42305 * 128.16035 * 359.67891 * 12 11 10 14 14 N 1.30030 * 106.27652 * 179.83813 * 13 12 11 15 15 O 1.20845 * 111.94911 * 0.45219 * 14 13 12 16 16 C 1.34014 * 111.83917 * 359.70670 * 15 14 13 17 17 N 1.31192 * 118.26824 * 0.02562 * 11 10 9 18 18 S 1.69642 * 107.83503 * 359.97438 * 17 11 10 19 19 H 0.96993 * 120.00636 * 359.97438 * 1 2 3 20 20 H 1.08006 * 123.00545 * 0.02573 * 10 9 7 21 21 H 1.07997 * 126.86514 * 0.02562 * 13 12 11 22 22 H 1.07997 * 126.87096 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3076 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 2.3837 2.1073 -1.3948 5 1 1.4956 2.6199 0.8028 6 1 3.5878 1.4121 0.5920 7 6 2.0084 -1.2139 -0.0005 8 1 3.0835 -1.2167 0.1024 9 6 1.3141 -2.4240 -0.1346 10 6 1.8494 -3.7052 -0.2748 11 6 0.9034 -4.6971 -0.3847 12 6 1.3044 -6.1181 -0.5409 13 6 2.6192 -6.6587 -0.6059 14 7 2.4784 -7.9442 -0.7413 15 8 1.3152 -8.2699 -0.7779 16 6 0.4981 -7.2140 -0.6622 17 7 -0.3626 -4.3550 -0.3489 18 16 -0.4406 -2.6705 -0.1638 19 1 -0.4851 0.8399 0.0004 20 1 2.9115 -3.9002 -0.2944 21 1 3.5484 -6.1110 -0.5505 22 1 -0.5818 -7.2271 -0.6647 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259423635.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:04 Heat of formation + Delta-G solvation = 71.031263 kcal Electronic energy + Delta-G solvation = -12013.448483 eV Core-core repulsion = 9662.554629 eV Total energy + Delta-G solvation = -2350.893853 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 222.020 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -44.42681 -36.92712 -34.47298 -33.05250 -31.20746 -29.78027 -26.33281 -24.16068 -22.39102 -20.49609 -18.84898 -17.80423 -17.15171 -17.08358 -15.39022 -15.30601 -14.49716 -13.69675 -12.87844 -12.60752 -12.58021 -12.12968 -11.64252 -11.46368 -11.27506 -10.88606 -10.55089 -10.18315 -9.81936 -9.18647 -9.14786 -8.79203 -8.10239 -7.25502 -6.88854 -4.95002 1.78408 2.29472 2.61217 2.81677 2.88155 3.08498 3.38788 3.51324 3.60805 3.89810 4.15630 4.76529 4.80732 5.27174 5.72314 5.88840 6.14170 6.46515 6.60543 6.92038 7.20795 7.33449 7.73841 8.09084 8.19939 8.43733 8.65633 9.59542 Molecular weight = 222.02amu Principal moments of inertia in cm(-1) A = 0.063035 B = 0.007207 C = 0.006487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 444.094494 B = 3884.246283 C = 4315.481592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.760 5.760 2 C 0.053 3.947 3 Si 0.939 3.061 4 H -0.263 1.263 5 H -0.270 1.270 6 H -0.255 1.255 7 C -0.364 4.364 8 H 0.101 0.899 9 C 0.048 3.952 10 C -0.394 4.394 11 C 0.206 3.794 12 C -0.113 4.113 13 C 0.008 3.992 14 N -0.378 5.378 15 O 0.085 5.915 16 C -0.049 4.049 17 N -0.603 5.603 18 S 0.183 5.817 19 H 0.301 0.699 20 H 0.117 0.883 21 H 0.190 0.810 22 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.865 -1.249 -0.311 2.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.386 5.386 2 C -0.172 4.172 3 Si 0.762 3.238 4 H -0.188 1.188 5 H -0.195 1.195 6 H -0.179 1.179 7 C -0.402 4.402 8 H 0.119 0.881 9 C -0.079 4.079 10 C -0.427 4.427 11 C 0.040 3.960 12 C -0.122 4.122 13 C -0.172 4.172 14 N -0.084 5.084 15 O 0.022 5.978 16 C -0.133 4.133 17 N -0.429 5.429 18 S 0.334 5.666 19 H 0.113 0.887 20 H 0.135 0.865 21 H 0.207 0.793 22 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 0.234 -2.007 -0.397 2.059 hybrid contribution 1.798 1.308 0.053 2.224 sum 2.032 -0.699 -0.344 2.176 Atomic orbital electron populations 1.69127 1.07867 1.31437 1.30159 1.26348 0.95236 1.02998 0.92580 0.85743 0.80197 0.78223 0.79686 1.18770 1.19465 1.17893 1.19214 0.95956 0.88387 1.36686 0.88127 1.22885 0.96015 0.95353 0.93626 1.20552 0.98752 0.91043 1.32386 1.18118 0.90116 0.89361 0.98374 1.19935 0.91795 0.94005 1.06443 1.25075 0.99794 0.89936 1.02428 1.73677 0.98127 1.16604 1.20028 1.84692 1.11427 1.34151 1.67494 1.26085 0.98817 0.85005 1.03385 1.76394 1.18860 1.10051 1.37555 1.85032 1.07533 0.99441 1.74596 0.88672 0.86519 0.79268 0.76497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -17.50 10.98 55.56 0.61 -16.89 14 2 C 0.05 1.17 5.49 -17.28 -0.09 1.08 14 3 Si 0.94 16.25 29.57 -169.99 -5.03 11.22 14 4 H -0.26 -4.52 7.11 56.52 0.40 -4.12 14 5 H -0.27 -4.55 7.11 56.52 0.40 -4.15 14 6 H -0.26 -4.34 7.11 56.52 0.40 -3.94 14 7 C -0.36 -8.73 9.38 -38.14 -0.36 -9.09 14 8 H 0.10 2.23 7.86 -52.48 -0.41 1.82 14 9 C 0.05 1.22 6.39 -38.37 -0.25 0.98 14 10 C -0.39 -9.66 9.86 -39.36 -0.39 -10.05 14 11 C 0.21 4.96 6.62 -84.19 -0.56 4.40 14 12 C -0.11 -2.30 6.25 -104.70 -0.65 -2.95 14 13 C 0.01 0.15 11.72 -16.75 -0.20 -0.05 14 14 N -0.38 -6.78 12.04 30.62 0.37 -6.41 14 15 O 0.08 1.44 11.17 17.26 0.19 1.63 14 16 C -0.05 -0.85 12.18 30.14 0.37 -0.48 14 17 N -0.60 -15.29 11.90 32.40 0.39 -14.90 14 18 S 0.18 4.70 21.28 -107.50 -2.29 2.41 14 19 H 0.30 6.13 8.29 -40.82 -0.34 5.79 14 20 H 0.12 2.62 7.62 -52.48 -0.40 2.22 14 21 H 0.19 2.97 7.79 -52.49 -0.41 2.56 14 22 H 0.22 3.22 8.06 -52.49 -0.42 2.80 14 LS Contribution 225.78 15.07 3.40 3.40 Total: -1.00 -27.45 225.78 -5.26 -32.70 By element: Atomic # 1 Polarization: 3.76 SS G_CDS: -0.78 Total: 2.98 kcal Atomic # 6 Polarization: -14.03 SS G_CDS: -2.13 Total: -16.16 kcal Atomic # 7 Polarization: -39.56 SS G_CDS: 1.36 Total: -38.20 kcal Atomic # 8 Polarization: 1.44 SS G_CDS: 0.19 Total: 1.63 kcal Atomic # 14 Polarization: 16.25 SS G_CDS: -5.03 Total: 11.22 kcal Atomic # 16 Polarization: 4.70 SS G_CDS: -2.29 Total: 2.41 kcal Total LS contribution 3.40 Total: 3.40 kcal Total: -27.45 -5.26 -32.70 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259423635.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.736 kcal (2) G-P(sol) polarization free energy of solvation -27.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.704 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds