Wall clock time and date at job start Mon Mar 30 2020 02:48:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30757 * 1 3 3 Si 1.86797 * 119.99850 * 2 1 4 4 H 1.48502 * 109.47480 * 274.98600 * 3 2 1 5 5 H 1.48499 * 109.47199 * 34.98610 * 3 2 1 6 6 H 1.48499 * 109.47275 * 154.98468 * 3 2 1 7 7 C 1.40169 * 120.00117 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99765 * 186.32036 * 7 2 1 9 9 C 1.40162 * 120.00435 * 6.31674 * 7 2 1 10 10 C 1.39554 * 127.75335 * 173.79449 * 9 7 2 11 11 C 1.37499 * 113.97916 * 179.97438 * 10 9 7 12 12 C 1.48480 * 120.86482 * 179.97438 * 11 10 9 13 13 C 1.42305 * 128.16035 * 359.67891 * 12 11 10 14 14 N 1.30030 * 106.27652 * 179.83813 * 13 12 11 15 15 O 1.20845 * 111.94911 * 0.45219 * 14 13 12 16 16 C 1.34014 * 111.83917 * 359.70670 * 15 14 13 17 17 N 1.31192 * 118.26824 * 0.02562 * 11 10 9 18 18 S 1.69642 * 107.83503 * 359.97438 * 17 11 10 19 19 H 0.96993 * 120.00636 * 359.97438 * 1 2 3 20 20 H 1.08006 * 123.00545 * 0.02573 * 10 9 7 21 21 H 1.07997 * 126.86514 * 0.02562 * 13 12 11 22 22 H 1.07997 * 126.87096 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3076 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 2.3837 2.1073 -1.3948 5 1 1.4956 2.6199 0.8028 6 1 3.5878 1.4121 0.5920 7 6 2.0084 -1.2139 -0.0005 8 1 3.0835 -1.2167 0.1024 9 6 1.3141 -2.4240 -0.1346 10 6 1.8494 -3.7052 -0.2748 11 6 0.9034 -4.6971 -0.3847 12 6 1.3044 -6.1181 -0.5409 13 6 2.6192 -6.6587 -0.6059 14 7 2.4784 -7.9442 -0.7413 15 8 1.3152 -8.2699 -0.7779 16 6 0.4981 -7.2140 -0.6622 17 7 -0.3626 -4.3550 -0.3489 18 16 -0.4406 -2.6705 -0.1638 19 1 -0.4851 0.8399 0.0004 20 1 2.9115 -3.9002 -0.2944 21 1 3.5484 -6.1110 -0.5505 22 1 -0.5818 -7.2271 -0.6647 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259423635.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:04 Heat of formation + Delta-G solvation = 54.664461 kcal Electronic energy + Delta-G solvation = -12014.158200 eV Core-core repulsion = 9662.554629 eV Total energy + Delta-G solvation = -2351.603571 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 222.020 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -45.86613 -38.71095 -36.23292 -34.54871 -32.73805 -31.56776 -28.15298 -25.79871 -23.88942 -22.10830 -20.52595 -19.65772 -18.61818 -18.50898 -17.22378 -16.95602 -16.04063 -15.21695 -14.45138 -14.38938 -14.12823 -13.84515 -13.25117 -13.06186 -12.91289 -12.46463 -11.95931 -11.73240 -11.31743 -11.08673 -10.69492 -10.66594 -9.97131 -8.97147 -8.77586 -6.82373 0.23921 0.69648 1.08808 1.38931 1.49680 1.59055 1.62784 1.85580 2.12514 2.33297 2.42773 2.99924 3.33574 3.85963 4.25092 4.30414 4.77964 4.85739 4.96170 5.11689 5.37727 5.53705 5.92299 6.26498 6.37337 6.60789 7.23226 7.92042 Molecular weight = 222.02amu Principal moments of inertia in cm(-1) A = 0.063035 B = 0.007207 C = 0.006487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 444.094494 B = 3884.246283 C = 4315.481592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.781 5.781 2 C 0.014 3.986 3 Si 1.018 2.982 4 H -0.258 1.258 5 H -0.260 1.260 6 H -0.247 1.247 7 C -0.377 4.377 8 H 0.116 0.884 9 C 0.022 3.978 10 C -0.418 4.418 11 C 0.207 3.793 12 C -0.156 4.156 13 C 0.016 3.984 14 N -0.383 5.383 15 O 0.095 5.905 16 C -0.018 4.018 17 N -0.624 5.624 18 S 0.137 5.863 19 H 0.313 0.687 20 H 0.131 0.869 21 H 0.209 0.791 22 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.942 -0.595 -0.338 3.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.407 5.407 2 C -0.208 4.208 3 Si 0.835 3.165 4 H -0.182 1.182 5 H -0.184 1.184 6 H -0.170 1.170 7 C -0.414 4.414 8 H 0.134 0.866 9 C -0.104 4.104 10 C -0.451 4.451 11 C 0.042 3.958 12 C -0.165 4.165 13 C -0.164 4.164 14 N -0.089 5.089 15 O 0.034 5.966 16 C -0.102 4.102 17 N -0.450 5.450 18 S 0.287 5.713 19 H 0.126 0.874 20 H 0.149 0.851 21 H 0.226 0.774 22 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges 1.301 -1.405 -0.426 1.962 hybrid contribution 1.455 1.101 0.063 1.826 sum 2.756 -0.303 -0.363 2.797 Atomic orbital electron populations 1.69175 1.09497 1.33272 1.28769 1.27447 0.95952 1.06216 0.91196 0.84613 0.78918 0.73052 0.79925 1.18223 1.18443 1.17018 1.19734 0.96916 0.88823 1.35952 0.86647 1.23290 0.95785 0.96650 0.94629 1.20789 0.99630 0.90968 1.33754 1.18479 0.89655 0.91154 0.96475 1.19909 0.93578 0.93011 1.09973 1.25319 0.99851 0.89863 1.01411 1.73682 0.98410 1.16363 1.20494 1.84713 1.11225 1.33710 1.66962 1.26471 0.99594 0.84146 0.99960 1.76421 1.19602 1.09155 1.39798 1.84927 1.08811 1.00950 1.76609 0.87384 0.85090 0.77403 0.74159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -35.71 10.98 21.87 0.24 -35.47 14 2 C 0.01 0.62 5.49 85.32 0.47 1.09 14 3 Si 1.02 31.40 29.57 68.60 2.03 33.43 14 4 H -0.26 -7.75 7.11 99.48 0.71 -7.05 14 5 H -0.26 -7.61 7.11 99.48 0.71 -6.90 14 6 H -0.25 -7.28 7.11 99.48 0.71 -6.57 14 7 C -0.38 -17.89 9.38 23.21 0.22 -17.67 14 8 H 0.12 4.99 7.86 -2.91 -0.02 4.96 14 9 C 0.02 1.16 6.39 23.05 0.15 1.31 14 10 C -0.42 -20.70 9.86 22.41 0.22 -20.48 14 11 C 0.21 10.04 6.62 41.80 0.28 10.32 14 12 C -0.16 -6.20 6.25 -19.92 -0.12 -6.32 14 13 C 0.02 0.56 11.72 85.97 1.01 1.56 14 14 N -0.38 -12.97 12.04 -58.18 -0.70 -13.67 14 15 O 0.10 3.02 11.17 71.97 0.80 3.82 14 16 C -0.02 -0.58 12.18 67.44 0.82 0.24 14 17 N -0.62 -32.14 11.90 -51.40 -0.61 -32.75 14 18 S 0.14 7.23 21.28 -56.49 -1.20 6.03 14 19 H 0.31 12.50 8.29 -92.71 -0.77 11.73 14 20 H 0.13 5.86 7.62 -2.91 -0.02 5.84 14 21 H 0.21 6.19 7.79 -2.91 -0.02 6.17 14 22 H 0.24 6.63 8.06 -2.91 -0.02 6.61 14 Total: -1.00 -58.62 225.78 4.85 -53.77 By element: Atomic # 1 Polarization: 13.54 SS G_CDS: 1.26 Total: 14.80 kcal Atomic # 6 Polarization: -32.99 SS G_CDS: 3.04 Total: -29.95 kcal Atomic # 7 Polarization: -80.83 SS G_CDS: -1.07 Total: -81.90 kcal Atomic # 8 Polarization: 3.02 SS G_CDS: 0.80 Total: 3.82 kcal Atomic # 14 Polarization: 31.40 SS G_CDS: 2.03 Total: 33.43 kcal Atomic # 16 Polarization: 7.23 SS G_CDS: -1.20 Total: 6.03 kcal Total: -58.62 4.85 -53.77 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259423635.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.433 kcal (2) G-P(sol) polarization free energy of solvation -58.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.769 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds