Wall clock time and date at job start Mon Mar 30 2020 02:57:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86793 * 120.00163 * 2 1 4 4 H 1.48500 * 109.47136 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.46779 * 299.99506 * 3 2 1 6 6 H 1.48497 * 109.47448 * 59.99526 * 3 2 1 7 7 C 1.37880 * 119.99666 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99603 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00010 * 0.02562 * 7 2 1 10 10 H 1.09002 * 110.96750 * 300.69957 * 9 7 2 11 11 S 1.83299 * 111.09873 * 64.83027 * 9 7 2 12 12 C 1.77437 * 96.60781 * 142.83684 * 11 9 7 13 13 C 1.38823 * 130.57190 * 164.76075 * 12 11 9 14 14 C 1.38026 * 120.16295 * 180.24465 * 13 12 11 15 15 C 1.38321 * 119.29157 * 0.02562 * 14 13 12 16 16 C 1.37692 * 120.54308 * 359.89822 * 15 14 13 17 17 C 1.38883 * 108.28463 * 344.79496 * 12 11 9 18 18 C 1.50879 * 115.36717 * 359.27790 * 17 12 11 19 19 H 1.08995 * 109.27394 * 140.89451 * 18 17 12 20 20 O 1.42900 * 109.27517 * 260.32967 * 18 17 12 21 21 H 0.96998 * 119.99850 * 0.02562 * 1 2 3 22 22 H 1.08007 * 119.91932 * 0.22556 * 13 12 11 23 23 H 1.07996 * 120.35106 * 180.02562 * 14 13 12 24 24 H 1.08002 * 119.72728 * 179.87581 * 15 14 13 25 25 H 1.08005 * 119.47158 * 179.97438 * 16 15 14 26 26 H 0.96703 * 114.00389 * 301.02996 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6056 -2.5769 0.8755 11 16 0.2918 -2.7072 -1.5475 12 6 0.5504 -4.4547 -1.7147 13 6 -0.1003 -5.3922 -2.5052 14 6 0.2792 -6.7186 -2.4625 15 6 1.3116 -7.1004 -1.6249 16 6 1.9580 -6.1703 -0.8420 17 6 1.5916 -4.8235 -0.8729 18 6 2.2159 -3.6981 -0.0855 19 1 2.4463 -4.0476 0.9209 20 8 3.4240 -3.2862 -0.7281 21 1 -0.4850 0.8400 -0.0004 22 1 -0.9057 -5.0830 -3.1551 23 1 -0.2246 -7.4504 -3.0765 24 1 1.6130 -8.1367 -1.5844 25 1 2.7616 -6.4876 -0.1939 26 1 4.0812 -3.9899 -0.8183 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259516027.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:16 Heat of formation + Delta-G solvation = -24.321007 kcal Electronic energy + Delta-G solvation = -12707.059331 eV Core-core repulsion = 10455.571036 eV Total energy + Delta-G solvation = -2251.488295 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 222.046 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.89367 -36.31388 -33.21099 -31.60924 -30.30714 -28.82235 -25.04637 -22.62429 -21.79869 -20.15249 -17.58617 -16.64816 -16.09318 -15.13393 -14.88306 -14.32046 -14.01278 -13.33734 -13.04753 -12.54440 -12.30880 -12.07705 -11.76837 -11.24363 -10.99644 -10.81470 -10.53721 -9.90269 -9.67352 -9.41355 -9.04889 -8.78397 -8.51005 -8.39159 -6.32473 -6.18202 -4.29875 1.68790 1.82853 2.86662 3.24729 3.29207 3.35151 3.87851 4.13446 4.25836 5.07770 5.11784 5.27983 5.33604 5.37796 5.65735 5.78687 6.05609 6.21006 6.26120 6.42094 6.77563 6.85049 6.95405 7.03527 7.36107 7.68004 7.85384 8.36412 8.73839 9.26454 10.74146 Molecular weight = 222.05amu Principal moments of inertia in cm(-1) A = 0.052786 B = 0.009235 C = 0.008247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 530.320750 B = 3031.217348 C = 3394.492420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.857 5.857 2 C 0.061 3.939 3 Si 0.910 3.090 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.281 1.281 7 C -0.463 4.463 8 H 0.088 0.912 9 C 0.111 3.889 10 H 0.072 0.928 11 S -0.186 6.186 12 C -0.055 4.055 13 C -0.116 4.116 14 C -0.101 4.101 15 C -0.154 4.154 16 C -0.089 4.089 17 C -0.159 4.159 18 C 0.149 3.851 19 H 0.055 0.945 20 O -0.527 6.527 21 H 0.269 0.731 22 H 0.118 0.882 23 H 0.119 0.881 24 H 0.115 0.885 25 H 0.111 0.889 26 H 0.355 0.645 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.613 -9.633 -1.044 10.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.492 5.492 2 C -0.148 4.148 3 Si 0.737 3.263 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.207 1.207 7 C -0.507 4.507 8 H 0.106 0.894 9 C -0.013 4.013 10 H 0.090 0.910 11 S 0.067 5.933 12 C -0.169 4.169 13 C -0.142 4.142 14 C -0.121 4.121 15 C -0.176 4.176 16 C -0.109 4.109 17 C -0.166 4.166 18 C 0.088 3.912 19 H 0.073 0.927 20 O -0.329 6.329 21 H 0.079 0.921 22 H 0.136 0.864 23 H 0.137 0.863 24 H 0.133 0.867 25 H 0.129 0.871 26 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 1.411 -7.929 -1.755 8.243 hybrid contribution 1.143 -0.756 0.585 1.491 sum 2.555 -8.686 -1.170 9.129 Atomic orbital electron populations 1.69948 1.06251 1.27799 1.45249 1.25251 0.95069 1.00331 0.94103 0.86218 0.80308 0.82044 0.77772 1.19093 1.20594 1.20699 1.20927 0.94284 0.87627 1.47911 0.89399 1.21784 0.92852 0.94749 0.91870 0.90984 1.87232 1.69585 0.95853 1.40599 1.22930 0.96471 1.00729 0.96761 1.20430 1.00758 0.92063 1.00913 1.20981 0.97169 0.95346 0.98607 1.20683 0.98743 0.98786 0.99419 1.20763 0.99424 0.91805 0.98899 1.21793 0.98381 0.95260 1.01145 1.21194 0.86317 0.91089 0.92562 0.92677 1.86878 1.25747 1.38035 1.82247 0.92058 0.86411 0.86258 0.86693 0.87067 0.80124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.04 12.60 55.43 0.70 -23.34 15 2 C 0.06 1.65 5.35 -17.82 -0.10 1.56 15 3 Si 0.91 20.83 29.54 -169.99 -5.02 15.81 15 4 H -0.27 -6.02 7.11 56.52 0.40 -5.62 15 5 H -0.28 -6.45 7.11 56.52 0.40 -6.05 15 6 H -0.28 -6.29 7.11 56.52 0.40 -5.88 15 7 C -0.46 -12.50 8.19 -34.44 -0.28 -12.79 15 8 H 0.09 2.38 6.72 -52.49 -0.35 2.02 15 9 C 0.11 2.81 3.22 -27.29 -0.09 2.72 15 10 H 0.07 1.90 8.14 -51.93 -0.42 1.48 15 11 S -0.19 -4.73 21.70 -107.50 -2.33 -7.06 15 12 C -0.05 -1.18 6.48 -39.13 -0.25 -1.44 15 13 C -0.12 -2.14 10.05 -39.44 -0.40 -2.54 15 14 C -0.10 -1.55 10.08 -39.63 -0.40 -1.95 15 15 C -0.15 -2.29 10.00 -39.75 -0.40 -2.69 15 16 C -0.09 -1.45 9.97 -39.27 -0.39 -1.85 15 17 C -0.16 -3.18 5.56 -103.79 -0.58 -3.76 15 18 C 0.15 3.17 3.70 -27.20 -0.10 3.07 15 19 H 0.06 1.06 8.14 -51.93 -0.42 0.64 15 20 O -0.53 -11.01 11.52 -35.23 -0.41 -11.42 15 21 H 0.27 7.13 8.31 -40.82 -0.34 6.79 15 22 H 0.12 2.00 8.06 -52.48 -0.42 1.58 15 23 H 0.12 1.43 8.06 -52.49 -0.42 1.01 15 24 H 0.12 1.34 8.06 -52.49 -0.42 0.91 15 25 H 0.11 1.50 8.06 -52.48 -0.42 1.08 15 26 H 0.35 5.51 9.06 45.56 0.41 5.92 15 LS Contribution 241.89 15.07 3.65 3.65 Total: -1.00 -30.12 241.89 -8.01 -38.13 By element: Atomic # 1 Polarization: 5.50 SS G_CDS: -1.61 Total: 3.88 kcal Atomic # 6 Polarization: -16.67 SS G_CDS: -2.98 Total: -19.65 kcal Atomic # 7 Polarization: -24.04 SS G_CDS: 0.70 Total: -23.34 kcal Atomic # 8 Polarization: -11.01 SS G_CDS: -0.41 Total: -11.42 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Atomic # 16 Polarization: -4.73 SS G_CDS: -2.33 Total: -7.06 kcal Total LS contribution 3.65 Total: 3.65 kcal Total: -30.12 -8.01 -38.13 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259516027.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.813 kcal (2) G-P(sol) polarization free energy of solvation -30.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds