Wall clock time and date at job start Mon Mar 30 2020 02:57:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86793 * 120.00163 * 2 1 4 4 H 1.48500 * 109.47136 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.46779 * 299.99506 * 3 2 1 6 6 H 1.48497 * 109.47448 * 59.99526 * 3 2 1 7 7 C 1.37880 * 119.99666 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99603 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00010 * 0.02562 * 7 2 1 10 10 H 1.09002 * 110.96750 * 300.69957 * 9 7 2 11 11 S 1.83299 * 111.09873 * 64.83027 * 9 7 2 12 12 C 1.77437 * 96.60781 * 142.83684 * 11 9 7 13 13 C 1.38823 * 130.57190 * 164.76075 * 12 11 9 14 14 C 1.38026 * 120.16295 * 180.24465 * 13 12 11 15 15 C 1.38321 * 119.29157 * 0.02562 * 14 13 12 16 16 C 1.37692 * 120.54308 * 359.89822 * 15 14 13 17 17 C 1.38883 * 108.28463 * 344.79496 * 12 11 9 18 18 C 1.50879 * 115.36717 * 359.27790 * 17 12 11 19 19 H 1.08995 * 109.27394 * 140.89451 * 18 17 12 20 20 O 1.42900 * 109.27517 * 260.32967 * 18 17 12 21 21 H 0.96998 * 119.99850 * 0.02562 * 1 2 3 22 22 H 1.08007 * 119.91932 * 0.22556 * 13 12 11 23 23 H 1.07996 * 120.35106 * 180.02562 * 14 13 12 24 24 H 1.08002 * 119.72728 * 179.87581 * 15 14 13 25 25 H 1.08005 * 119.47158 * 179.97438 * 16 15 14 26 26 H 0.96703 * 114.00389 * 301.02996 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6056 -2.5769 0.8755 11 16 0.2918 -2.7072 -1.5475 12 6 0.5504 -4.4547 -1.7147 13 6 -0.1003 -5.3922 -2.5052 14 6 0.2792 -6.7186 -2.4625 15 6 1.3116 -7.1004 -1.6249 16 6 1.9580 -6.1703 -0.8420 17 6 1.5916 -4.8235 -0.8729 18 6 2.2159 -3.6981 -0.0855 19 1 2.4463 -4.0476 0.9209 20 8 3.4240 -3.2862 -0.7281 21 1 -0.4850 0.8400 -0.0004 22 1 -0.9057 -5.0830 -3.1551 23 1 -0.2246 -7.4504 -3.0765 24 1 1.6130 -8.1367 -1.5844 25 1 2.7616 -6.4876 -0.1939 26 1 4.0812 -3.9899 -0.8183 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259516027.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:16 Heat of formation + Delta-G solvation = -44.622730 kcal Electronic energy + Delta-G solvation = -12707.939680 eV Core-core repulsion = 10455.571036 eV Total energy + Delta-G solvation = -2252.368644 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 222.046 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.33696 -37.87902 -35.18012 -33.18623 -31.65767 -30.57851 -26.85627 -24.16277 -23.32240 -21.72700 -19.32539 -18.21858 -17.89014 -16.80547 -16.52775 -15.80927 -15.59713 -14.86038 -14.55951 -14.27048 -14.03636 -13.76023 -13.27508 -12.96629 -12.66651 -12.34542 -12.28638 -11.75380 -11.47450 -11.03463 -10.76162 -10.58013 -10.26322 -9.76353 -8.34182 -8.06875 -6.39639 0.31439 0.46612 1.10804 1.40398 1.45799 1.55070 2.06281 2.34964 2.77766 3.16915 3.54198 3.77177 3.93217 4.17025 4.27303 4.48179 4.59448 4.69547 4.85728 5.03550 5.10828 5.47373 5.52273 5.58062 5.62391 5.89128 6.08256 6.64364 6.97622 7.24024 8.73196 Molecular weight = 222.05amu Principal moments of inertia in cm(-1) A = 0.052786 B = 0.009235 C = 0.008247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 530.320750 B = 3031.217348 C = 3394.492420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.014 3.986 3 Si 0.975 3.025 4 H -0.260 1.260 5 H -0.282 1.282 6 H -0.271 1.271 7 C -0.483 4.483 8 H 0.083 0.917 9 C 0.110 3.890 10 H 0.044 0.956 11 S -0.269 6.269 12 C -0.082 4.082 13 C -0.128 4.128 14 C -0.090 4.090 15 C -0.135 4.135 16 C -0.086 4.086 17 C -0.173 4.173 18 C 0.155 3.845 19 H 0.075 0.925 20 O -0.546 6.546 21 H 0.270 0.730 22 H 0.121 0.879 23 H 0.163 0.837 24 H 0.163 0.837 25 H 0.147 0.853 26 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.936 -12.552 -1.380 13.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.191 4.191 3 Si 0.799 3.201 4 H -0.184 1.184 5 H -0.208 1.208 6 H -0.196 1.196 7 C -0.526 4.526 8 H 0.101 0.899 9 C -0.013 4.013 10 H 0.061 0.939 11 S -0.019 6.019 12 C -0.195 4.195 13 C -0.152 4.152 14 C -0.110 4.110 15 C -0.156 4.156 16 C -0.106 4.106 17 C -0.179 4.179 18 C 0.094 3.906 19 H 0.092 0.908 20 O -0.352 6.352 21 H 0.079 0.921 22 H 0.139 0.861 23 H 0.180 0.820 24 H 0.181 0.819 25 H 0.165 0.835 26 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 2.768 -10.900 -2.081 11.437 hybrid contribution 0.717 -0.130 0.626 0.960 sum 3.485 -11.030 -1.455 11.658 Atomic orbital electron populations 1.70082 1.07688 1.28425 1.46672 1.26075 0.95801 1.03635 0.93611 0.85233 0.79182 0.77896 0.77817 1.18424 1.20829 1.19570 1.21101 0.94115 0.88823 1.48557 0.89942 1.21589 0.93156 0.96418 0.90181 0.93853 1.87129 1.71535 1.01760 1.41507 1.22811 0.99037 0.97756 0.99938 1.20715 1.00861 0.93174 1.00485 1.21486 0.96861 0.94272 0.98364 1.21308 0.96781 1.00676 0.96801 1.21167 1.00137 0.89958 0.99290 1.21782 0.98400 0.96629 1.01124 1.20961 0.85808 0.89849 0.93961 0.90778 1.86801 1.26246 1.39866 1.82319 0.92123 0.86074 0.81980 0.81901 0.83528 0.77387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -52.43 12.60 21.45 0.27 -52.16 15 2 C 0.01 0.77 5.35 84.65 0.45 1.23 15 3 Si 0.97 43.89 29.54 68.60 2.03 45.91 15 4 H -0.26 -11.31 7.11 99.48 0.71 -10.60 15 5 H -0.28 -12.70 7.11 99.48 0.71 -11.99 15 6 H -0.27 -11.60 7.11 99.48 0.71 -10.89 15 7 C -0.48 -27.08 8.19 25.60 0.21 -26.87 15 8 H 0.08 4.59 6.72 -2.91 -0.02 4.57 15 9 C 0.11 5.86 3.22 30.23 0.10 5.96 15 10 H 0.04 2.47 8.14 -2.39 -0.02 2.45 15 11 S -0.27 -14.37 21.70 -56.49 -1.23 -15.60 15 12 C -0.08 -3.54 6.48 22.56 0.15 -3.40 15 13 C -0.13 -4.48 10.05 22.36 0.22 -4.25 15 14 C -0.09 -2.32 10.08 22.24 0.22 -2.10 15 15 C -0.13 -3.17 10.00 22.16 0.22 -2.95 15 16 C -0.09 -2.42 9.97 22.47 0.22 -2.20 15 17 C -0.17 -6.68 5.56 -19.32 -0.11 -6.79 15 18 C 0.15 6.59 3.70 30.29 0.11 6.70 15 19 H 0.07 2.81 8.14 -2.39 -0.02 2.79 15 20 O -0.55 -22.63 11.52 -148.98 -1.72 -24.35 15 21 H 0.27 14.92 8.31 -92.71 -0.77 14.15 15 22 H 0.12 4.03 8.06 -2.91 -0.02 4.01 15 23 H 0.16 2.82 8.06 -2.91 -0.02 2.80 15 24 H 0.16 2.42 8.06 -2.91 -0.02 2.39 15 25 H 0.15 3.10 8.06 -2.91 -0.02 3.07 15 26 H 0.38 11.08 9.06 -74.06 -0.67 10.41 15 Total: -1.00 -69.40 241.89 1.69 -67.71 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: 0.53 Total: 13.15 kcal Atomic # 6 Polarization: -36.47 SS G_CDS: 1.81 Total: -34.66 kcal Atomic # 7 Polarization: -52.43 SS G_CDS: 0.27 Total: -52.16 kcal Atomic # 8 Polarization: -22.63 SS G_CDS: -1.72 Total: -24.35 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.91 kcal Atomic # 16 Polarization: -14.37 SS G_CDS: -1.23 Total: -15.60 kcal Total: -69.40 1.69 -67.71 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259516027.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.087 kcal (2) G-P(sol) polarization free energy of solvation -69.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds