Wall clock time and date at job start Mon Mar 30 2020 02:57:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86801 * 119.99602 * 2 1 4 4 H 1.48499 * 109.47199 * 270.00080 * 3 2 1 5 5 H 1.48493 * 109.47004 * 30.00707 * 3 2 1 6 6 H 1.48504 * 109.46749 * 150.00486 * 3 2 1 7 7 C 1.37876 * 120.00094 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00261 * 359.97438 * 7 2 1 9 9 C 1.50699 * 120.00112 * 179.97438 * 7 2 1 10 10 H 1.09008 * 110.99764 * 304.15209 * 9 7 2 11 11 S 1.83300 * 111.10014 * 68.30255 * 9 7 2 12 12 C 1.77433 * 96.61187 * 93.11573 * 11 9 7 13 13 C 1.38826 * 130.56898 * 195.47556 * 12 11 9 14 14 C 1.38026 * 120.15668 * 179.34834 * 13 12 11 15 15 C 1.38321 * 119.29493 * 359.97438 * 14 13 12 16 16 C 1.37700 * 120.54152 * 0.13686 * 15 14 13 17 17 C 1.38878 * 108.28179 * 15.16431 * 12 11 9 18 18 C 1.50877 * 115.37171 * 0.78578 * 17 12 11 19 19 H 1.09002 * 109.27884 * 219.05170 * 18 17 12 20 20 O 1.42898 * 109.28438 * 99.52662 * 18 17 12 21 21 H 0.97000 * 120.00337 * 359.97438 * 1 2 3 22 22 H 1.07996 * 119.92018 * 359.35827 * 13 12 11 23 23 H 1.08001 * 120.35193 * 180.02562 * 14 13 12 24 24 H 1.08003 * 119.72752 * 180.16919 * 15 14 13 25 25 H 1.07998 * 119.47341 * 180.02562 * 16 15 14 26 26 H 0.96708 * 113.99538 * 60.22944 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6526 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 1 3.9019 -0.6225 -0.8433 11 16 4.1721 -0.5622 1.5877 12 6 4.3353 -2.1399 2.3830 13 6 4.5141 -2.4621 3.7215 14 6 4.6029 -3.7833 4.1107 15 6 4.5113 -4.7783 3.1543 16 6 4.3362 -4.4585 1.8264 17 6 4.2485 -3.1285 1.4115 18 6 4.0665 -2.6321 -0.0016 19 1 3.3701 -3.2864 -0.5260 20 8 5.3273 -2.6494 -0.6740 21 1 -0.4850 0.8400 0.0004 22 1 4.5837 -1.6770 4.4599 23 1 4.7416 -4.0376 5.1512 24 1 4.5771 -5.8146 3.4514 25 1 4.2664 -5.2492 1.0941 26 1 5.7308 -3.5264 -0.7306 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259516033.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:23 Heat of formation + Delta-G solvation = -46.628001 kcal Electronic energy + Delta-G solvation = -12805.241092 eV Core-core repulsion = 10552.785494 eV Total energy + Delta-G solvation = -2252.455599 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 222.046 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.39869 -37.93523 -35.37017 -33.39044 -31.68137 -31.02428 -26.80841 -24.13664 -23.30883 -21.74235 -19.64463 -18.80188 -17.81295 -16.63882 -16.53336 -16.00197 -15.83409 -15.09593 -14.73561 -14.62576 -14.32914 -13.52357 -13.42667 -12.98851 -12.58666 -12.56119 -12.45965 -12.04738 -11.64334 -11.19127 -11.03908 -10.62392 -10.27711 -9.76582 -8.54206 -8.21778 -6.52923 0.29726 0.44090 0.88588 1.21617 1.37112 1.50951 1.77722 2.24743 2.76425 3.04655 3.34072 3.66754 3.87551 4.13710 4.24090 4.48534 4.56900 4.66338 4.71492 4.87498 5.09333 5.20609 5.46261 5.48676 5.56667 5.96895 6.06405 6.40879 6.80087 7.04849 8.58615 Molecular weight = 222.05amu Principal moments of inertia in cm(-1) A = 0.035548 B = 0.011143 C = 0.010577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.486700 B = 2512.185809 C = 2646.716774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.049 3.951 3 Si 0.912 3.088 4 H -0.262 1.262 5 H -0.274 1.274 6 H -0.219 1.219 7 C -0.498 4.498 8 H 0.055 0.945 9 C 0.088 3.912 10 H 0.080 0.920 11 S -0.283 6.283 12 C -0.072 4.072 13 C -0.124 4.124 14 C -0.093 4.093 15 C -0.133 4.133 16 C -0.091 4.091 17 C -0.162 4.162 18 C 0.160 3.840 19 H 0.074 0.926 20 O -0.563 6.563 21 H 0.277 0.723 22 H 0.125 0.875 23 H 0.163 0.837 24 H 0.162 0.838 25 H 0.145 0.855 26 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.683 -8.159 4.691 13.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.157 4.157 3 Si 0.737 3.263 4 H -0.187 1.187 5 H -0.199 1.199 6 H -0.145 1.145 7 C -0.540 4.540 8 H 0.073 0.927 9 C -0.037 4.037 10 H 0.098 0.902 11 S -0.036 6.036 12 C -0.185 4.185 13 C -0.149 4.149 14 C -0.113 4.113 15 C -0.153 4.153 16 C -0.111 4.111 17 C -0.168 4.168 18 C 0.100 3.900 19 H 0.091 0.909 20 O -0.371 6.371 21 H 0.087 0.913 22 H 0.143 0.857 23 H 0.181 0.819 24 H 0.180 0.820 25 H 0.162 0.838 26 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 9.682 -6.098 4.938 12.462 hybrid contribution -0.351 -0.663 -0.372 0.837 sum 9.331 -6.761 4.566 12.394 Atomic orbital electron populations 1.69957 1.07967 1.29217 1.47297 1.25649 0.95288 1.02637 0.92098 0.86148 0.81230 0.79368 0.79508 1.18701 1.19885 1.14488 1.20871 0.88262 0.94394 1.50497 0.92693 1.21829 0.96614 0.94587 0.90623 0.90249 1.86459 1.80932 1.12850 1.23390 1.22593 1.01746 0.96716 0.97413 1.20726 1.03288 0.98357 0.92484 1.21484 0.97560 0.90968 1.01242 1.21310 1.01083 1.01028 0.91902 1.21168 0.98500 0.93587 0.97846 1.21621 1.04817 0.95227 0.95112 1.20858 0.85320 0.95561 0.88257 0.90875 1.86544 1.35483 1.36570 1.78455 0.91344 0.85662 0.81947 0.82020 0.83765 0.75872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.03 13.96 21.45 0.30 -53.73 15 2 C 0.05 2.78 5.47 84.65 0.46 3.24 15 3 Si 0.91 43.36 26.68 68.60 1.83 45.19 15 4 H -0.26 -11.89 7.11 99.48 0.71 -11.18 15 5 H -0.27 -12.76 7.11 99.48 0.71 -12.05 15 6 H -0.22 -10.28 4.69 94.08 0.44 -9.83 15 7 C -0.50 -27.82 9.12 25.60 0.23 -27.59 15 8 H 0.05 3.33 7.92 -2.91 -0.02 3.30 15 9 C 0.09 4.28 2.38 30.23 0.07 4.35 15 10 H 0.08 3.91 7.36 -2.38 -0.02 3.89 15 11 S -0.28 -13.52 18.92 -56.49 -1.07 -14.59 15 12 C -0.07 -3.04 6.48 22.56 0.15 -2.89 15 13 C -0.12 -4.29 10.05 22.36 0.22 -4.07 15 14 C -0.09 -2.43 10.08 22.24 0.22 -2.20 15 15 C -0.13 -3.26 10.00 22.16 0.22 -3.04 15 16 C -0.09 -2.68 9.97 22.47 0.22 -2.46 15 17 C -0.16 -6.24 5.57 -19.33 -0.11 -6.35 15 18 C 0.16 6.57 3.39 30.29 0.10 6.68 15 19 H 0.07 2.94 7.82 -2.39 -0.02 2.93 15 20 O -0.56 -20.24 13.26 -148.98 -1.98 -22.22 15 21 H 0.28 15.32 8.31 -92.71 -0.77 14.55 15 22 H 0.13 4.01 8.06 -2.91 -0.02 3.98 15 23 H 0.16 2.90 8.06 -2.91 -0.02 2.87 15 24 H 0.16 2.60 8.06 -2.91 -0.02 2.57 15 25 H 0.14 3.27 8.06 -2.91 -0.02 3.25 15 26 H 0.39 9.65 9.08 -74.05 -0.67 8.98 15 Total: -1.00 -67.57 236.94 1.15 -66.42 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: 0.26 Total: 13.26 kcal Atomic # 6 Polarization: -36.14 SS G_CDS: 1.80 Total: -34.33 kcal Atomic # 7 Polarization: -54.03 SS G_CDS: 0.30 Total: -53.73 kcal Atomic # 8 Polarization: -20.24 SS G_CDS: -1.98 Total: -22.22 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 1.83 Total: 45.19 kcal Atomic # 16 Polarization: -13.52 SS G_CDS: -1.07 Total: -14.59 kcal Total: -67.57 1.15 -66.42 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259516033.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.792 kcal (2) G-P(sol) polarization free energy of solvation -67.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds