Wall clock time and date at job start Mon Mar 30 2020 03:01:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 H 1.09001 * 109.32094 * 60.00121 * 9 7 2 11 11 C 1.53220 * 109.32158 * 179.63594 * 9 7 2 12 12 C 1.52018 * 107.98495 * 177.05035 * 11 9 7 13 13 C 1.37229 * 126.43332 * 152.67677 * 12 11 9 14 14 C 1.33945 * 115.61041 * 180.14413 * 13 12 11 15 15 S 1.70646 * 111.04708 * 359.97438 * 14 13 12 16 16 C 1.38605 * 121.23847 * 332.69291 * 12 11 9 17 17 C 1.41726 * 122.85878 * 359.62117 * 16 12 11 18 18 O 1.21450 * 121.10123 * 178.46703 * 17 16 12 19 19 C 1.51190 * 117.70617 * 358.25924 * 17 16 12 20 20 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 21 21 H 1.08999 * 109.75797 * 296.66777 * 11 9 7 22 22 H 1.09005 * 109.75889 * 57.42526 * 11 9 7 23 23 H 1.07992 * 122.19104 * 0.12123 * 13 12 11 24 24 H 1.08006 * 124.47422 * 180.02562 * 14 13 12 25 25 H 1.09003 * 109.55755 * 271.53010 * 19 17 16 26 26 H 1.08994 * 109.24814 * 151.78688 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6250 -2.5541 -0.8911 11 6 2.2497 -3.6612 -0.0104 12 6 1.4610 -4.9586 0.0643 13 6 1.8527 -6.1797 -0.4240 14 6 0.9832 -7.1822 -0.2417 15 16 -0.4141 -6.6407 0.5746 16 6 0.2135 -5.0078 0.6663 17 6 -0.4027 -3.8740 1.2525 18 8 -1.5094 -3.9472 1.7475 19 6 0.3670 -2.5728 1.2445 20 1 -0.4850 0.8401 0.0004 21 1 2.8336 -3.6374 -0.9304 22 1 2.9139 -3.5836 0.8505 23 1 2.7998 -6.3230 -0.9228 24 1 1.1455 -8.1991 -0.5676 25 1 0.9914 -2.5126 2.1359 26 1 -0.3357 -1.7397 1.2393 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259522509.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:21 Heat of formation + Delta-G solvation = -18.659272 kcal Electronic energy + Delta-G solvation = -12751.559027 eV Core-core repulsion = 10500.316244 eV Total energy + Delta-G solvation = -2251.242783 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 222.046 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.29241 -37.21093 -34.67333 -31.85238 -28.90231 -28.01456 -25.27326 -23.22050 -21.06780 -20.11206 -17.57813 -16.74728 -16.24204 -15.14274 -14.59617 -14.28972 -13.84555 -13.72117 -13.09254 -12.76392 -12.52048 -12.11150 -11.52686 -11.25574 -11.01219 -10.72827 -10.55054 -10.32285 -9.97840 -9.61961 -9.41884 -8.66339 -8.43598 -8.40190 -8.02928 -6.08975 -4.18165 0.72553 1.88106 2.30928 2.64444 3.26805 3.34445 3.36291 3.56033 4.35981 5.07201 5.17464 5.29886 5.53735 5.63596 5.97784 6.14579 6.24973 6.35049 6.49450 6.71558 6.77267 6.87171 7.05261 7.56731 7.75699 7.94237 8.25360 8.36152 8.85855 9.48497 10.96793 Molecular weight = 222.05amu Principal moments of inertia in cm(-1) A = 0.049722 B = 0.008465 C = 0.007436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 562.997063 B = 3306.911567 C = 3764.726858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.063 3.937 3 Si 0.896 3.104 4 H -0.280 1.280 5 H -0.273 1.273 6 H -0.286 1.286 7 C -0.519 4.519 8 H 0.062 0.938 9 C 0.055 3.945 10 H 0.033 0.967 11 C -0.060 4.060 12 C -0.019 4.019 13 C -0.150 4.150 14 C -0.244 4.244 15 S 0.208 5.792 16 C -0.304 4.304 17 C 0.424 3.576 18 O -0.490 6.490 19 C -0.147 4.147 20 H 0.264 0.736 21 H 0.073 0.927 22 H 0.078 0.922 23 H 0.138 0.862 24 H 0.163 0.837 25 H 0.078 0.922 26 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.232 -10.787 -0.233 11.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.140 4.140 3 Si 0.723 3.277 4 H -0.206 1.206 5 H -0.198 1.198 6 H -0.212 1.212 7 C -0.557 4.557 8 H 0.080 0.920 9 C 0.036 3.964 10 H 0.052 0.948 11 C -0.098 4.098 12 C -0.034 4.034 13 C -0.181 4.181 14 C -0.381 4.381 15 S 0.480 5.520 16 C -0.422 4.422 17 C 0.305 3.695 18 O -0.370 6.370 19 C -0.187 4.187 20 H 0.074 0.926 21 H 0.092 0.908 22 H 0.096 0.904 23 H 0.156 0.844 24 H 0.180 0.820 25 H 0.096 0.904 26 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 1.139 -11.478 0.487 11.544 hybrid contribution 1.885 1.377 -0.640 2.421 sum 3.024 -10.100 -0.153 10.545 Atomic orbital electron populations 1.69832 1.05984 1.26956 1.49752 1.25016 0.94869 0.99373 0.94706 0.86535 0.79791 0.83168 0.78178 1.20583 1.19823 1.21203 1.21105 0.93072 0.89959 1.51591 0.92019 1.18667 0.92165 0.91922 0.93647 0.94846 1.20954 0.97816 0.89238 1.01840 1.20975 0.93070 0.96558 0.92803 1.19807 1.01733 0.91822 1.04781 1.25327 1.00673 1.04116 1.08031 1.82822 1.17099 1.01021 1.51102 1.25023 1.02250 0.99261 1.15640 1.21277 0.85700 0.89536 0.73025 1.90483 1.20208 1.87479 1.38803 1.22279 1.01230 0.94075 1.01102 0.92580 0.90840 0.90381 0.84377 0.81980 0.90415 0.85704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.71 11.28 55.43 0.63 -24.08 15 2 C 0.06 1.65 5.30 -17.82 -0.09 1.56 15 3 Si 0.90 20.40 29.54 -169.99 -5.02 15.38 15 4 H -0.28 -6.34 7.11 56.52 0.40 -5.94 15 5 H -0.27 -6.11 7.11 56.52 0.40 -5.71 15 6 H -0.29 -6.56 7.11 56.52 0.40 -6.16 15 7 C -0.52 -13.32 8.55 -34.44 -0.29 -13.61 15 8 H 0.06 1.53 7.74 -52.49 -0.41 1.12 15 9 C 0.05 1.29 2.04 -91.73 -0.19 1.11 15 10 H 0.03 0.88 8.14 -51.93 -0.42 0.45 15 11 C -0.06 -1.14 5.48 -27.12 -0.15 -1.29 15 12 C -0.02 -0.35 5.84 -104.20 -0.61 -0.96 15 13 C -0.15 -2.22 10.05 -41.46 -0.42 -2.63 15 14 C -0.24 -3.27 10.92 29.22 0.32 -2.96 15 15 S 0.21 3.26 22.95 -107.50 -2.47 0.80 15 16 C -0.30 -5.96 6.23 -38.12 -0.24 -6.20 15 17 C 0.42 9.59 6.93 -32.74 -0.23 9.36 15 18 O -0.49 -12.01 17.80 5.41 0.10 -11.92 15 19 C -0.15 -3.49 5.11 -27.71 -0.14 -3.63 15 20 H 0.26 7.05 8.31 -40.82 -0.34 6.71 15 21 H 0.07 1.31 8.14 -51.93 -0.42 0.89 15 22 H 0.08 1.42 8.14 -51.93 -0.42 1.00 15 23 H 0.14 1.69 8.06 -52.49 -0.42 1.27 15 24 H 0.16 1.62 8.06 -52.48 -0.42 1.19 15 25 H 0.08 1.76 8.14 -51.93 -0.42 1.33 15 26 H 0.13 3.36 6.01 -51.93 -0.31 3.04 15 LS Contribution 240.09 15.07 3.62 3.62 Total: -1.00 -28.68 240.09 -7.57 -36.26 By element: Atomic # 1 Polarization: 1.59 SS G_CDS: -2.39 Total: -0.80 kcal Atomic # 6 Polarization: -17.21 SS G_CDS: -2.04 Total: -19.25 kcal Atomic # 7 Polarization: -24.71 SS G_CDS: 0.63 Total: -24.08 kcal Atomic # 8 Polarization: -12.01 SS G_CDS: 0.10 Total: -11.92 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Atomic # 16 Polarization: 3.26 SS G_CDS: -2.47 Total: 0.80 kcal Total LS contribution 3.62 Total: 3.62 kcal Total: -28.68 -7.57 -36.26 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259522509.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.596 kcal (2) G-P(sol) polarization free energy of solvation -28.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds