Wall clock time and date at job start Mon Mar 30 2020 03:16:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.30909 * 125.08909 * 2 1 4 4 N 1.37486 * 116.32362 * 179.97438 * 3 2 1 5 5 C 1.38926 * 139.53714 * 180.02562 * 4 3 2 6 6 C 1.34331 * 107.12220 * 180.21625 * 5 4 3 7 7 C 1.50705 * 125.80755 * 179.73806 * 6 5 4 8 8 C 1.50700 * 109.46664 * 124.99939 * 7 6 5 9 9 H 1.07994 * 120.00632 * 359.97438 * 8 7 6 10 10 C 1.37885 * 119.99519 * 180.02562 * 8 7 6 11 11 N 1.31515 * 119.99877 * 0.02562 * 10 8 7 12 12 Si 1.86798 * 119.99707 * 179.97438 * 10 8 7 13 13 H 1.48497 * 109.47240 * 0.02562 * 12 10 8 14 14 H 1.48500 * 109.47161 * 120.00511 * 12 10 8 15 15 H 1.48500 * 109.47038 * 239.99942 * 12 10 8 16 16 N 1.33880 * 108.38946 * 359.60461 * 6 5 4 17 17 C 1.32356 * 109.13390 * 0.40182 * 16 6 5 18 18 S 1.75773 * 125.09239 * 179.97438 * 2 1 3 19 19 H 1.08999 * 109.47374 * 89.99813 * 1 2 3 20 20 H 1.09000 * 109.46390 * 209.99896 * 1 2 3 21 21 H 1.09003 * 109.46980 * 329.99390 * 1 2 3 22 22 H 1.08003 * 121.84027 * 359.94976 * 3 2 1 23 23 H 1.08002 * 126.43613 * 359.94566 * 5 4 3 24 24 H 1.08991 * 109.47027 * 244.99938 * 7 6 5 25 25 H 1.08999 * 109.46835 * 4.99988 * 7 6 5 26 26 H 0.96998 * 119.99507 * 179.97438 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2596 1.0712 0.0000 4 7 3.6184 0.8617 0.0006 5 6 4.8004 1.5916 0.0012 6 6 5.8114 0.7072 -0.0034 7 6 7.2798 1.0465 -0.0101 8 6 7.9579 0.3656 1.1508 9 1 7.3832 -0.2508 1.8261 10 6 9.3121 0.5305 1.3513 11 7 10.0117 1.2823 0.5298 12 14 10.1526 -0.3129 2.7906 13 1 9.1514 -1.0951 3.5593 14 1 11.2083 -1.2251 2.2821 15 1 10.7664 0.7106 3.6743 16 7 5.2929 -0.5271 0.0020 17 6 3.9720 -0.4427 0.0011 18 16 2.5176 -1.4382 0.0006 19 1 -0.3634 0.0000 -1.0276 20 1 -0.3632 -0.8900 0.5138 21 1 -0.3633 0.8900 0.5139 22 1 1.8363 2.0648 -0.0008 23 1 4.8896 2.6680 0.0006 24 1 7.7273 0.7051 -0.9434 25 1 7.4036 2.1258 0.0789 26 1 10.9643 1.3986 0.6711 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259542561.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:17 Heat of formation + Delta-G solvation = 87.510013 kcal Electronic energy + Delta-G solvation = -12232.692129 eV Core-core repulsion = 10018.345942 eV Total energy + Delta-G solvation = -2214.346187 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 222.052 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -42.03519 -36.70772 -33.23836 -31.95871 -30.00713 -28.24849 -25.83740 -23.51027 -22.64792 -20.24622 -18.91448 -18.12178 -16.26475 -15.57977 -15.37493 -14.50392 -14.39490 -13.66482 -13.57404 -13.13522 -12.50004 -12.30309 -12.03215 -11.48074 -10.99783 -10.96235 -10.64744 -10.56909 -9.99842 -9.84888 -9.40453 -9.17889 -8.37744 -7.96897 -7.29990 -5.95941 -3.95878 1.17825 1.19941 1.82747 2.62002 2.98154 3.37200 3.43945 3.50779 3.71162 4.54174 4.63756 4.91952 5.04027 5.22102 5.27062 5.40971 5.62576 5.70445 5.92916 6.19031 6.56545 7.19621 7.35712 7.54564 7.66298 8.01980 8.37411 8.57713 9.08299 9.66413 11.15285 Molecular weight = 222.05amu Principal moments of inertia in cm(-1) A = 0.059430 B = 0.006330 C = 0.005992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 471.029137 B = 4422.341079 C = 4671.750315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.212 4.212 3 C 0.057 3.943 4 N -0.415 5.415 5 C -0.084 4.084 6 C 0.101 3.899 7 C 0.089 3.911 8 C -0.499 4.499 9 H 0.060 0.940 10 C 0.055 3.945 11 N -0.899 5.899 12 Si 0.896 3.104 13 H -0.273 1.273 14 H -0.284 1.284 15 H -0.285 1.285 16 N -0.437 5.437 17 C 0.123 3.877 18 S 0.159 5.841 19 H 0.077 0.923 20 H 0.074 0.926 21 H 0.078 0.922 22 H 0.173 0.827 23 H 0.177 0.823 24 H 0.040 0.960 25 H 0.037 0.963 26 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.926 -0.100 -1.552 18.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.332 4.332 3 C -0.073 4.073 4 N -0.096 5.096 5 C -0.212 4.212 6 C -0.029 4.029 7 C 0.051 3.949 8 C -0.538 4.538 9 H 0.078 0.922 10 C -0.146 4.146 11 N -0.539 5.539 12 Si 0.724 3.276 13 H -0.197 1.197 14 H -0.210 1.210 15 H -0.211 1.211 16 N -0.161 5.161 17 C -0.242 4.242 18 S 0.407 5.593 19 H 0.095 0.905 20 H 0.093 0.907 21 H 0.096 0.904 22 H 0.190 0.810 23 H 0.195 0.805 24 H 0.058 0.942 25 H 0.056 0.944 26 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -18.535 -2.048 -1.577 18.714 hybrid contribution 0.422 1.877 0.786 2.078 sum -18.112 -0.171 -0.790 18.131 Atomic orbital electron populations 1.20193 0.85925 1.03504 1.03054 1.23631 1.00925 0.95216 1.13397 1.20187 0.80954 1.01054 1.05102 1.43804 1.04860 1.08309 1.52609 1.22694 0.81047 0.98519 1.18956 1.21896 0.98254 0.86187 0.96587 1.17822 0.81191 0.97305 0.98598 1.21082 0.92995 1.29014 1.10694 0.92194 1.24985 0.97352 0.95519 0.96704 1.69959 1.07450 1.39186 1.37330 0.86453 0.79414 0.79313 0.82386 1.19725 1.20969 1.21107 1.70658 1.00522 1.25638 1.19316 1.26153 0.98153 0.86398 1.13514 1.84370 0.88205 1.03170 1.83507 0.90464 0.90721 0.90369 0.81020 0.80538 0.94224 0.94435 0.93014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.47 10.36 36.01 0.37 -0.10 15 2 C -0.21 -2.47 6.42 -36.00 -0.23 -2.70 15 3 C 0.06 0.75 11.11 -16.71 -0.19 0.57 15 4 N -0.41 -7.55 3.19 -63.77 -0.20 -7.76 15 5 C -0.08 -1.68 11.91 -15.71 -0.19 -1.86 15 6 C 0.10 2.44 6.27 -83.08 -0.52 1.92 15 7 C 0.09 2.40 5.53 -29.03 -0.16 2.24 15 8 C -0.50 -14.81 9.07 -34.44 -0.31 -15.12 15 9 H 0.06 1.82 7.74 -52.49 -0.41 1.42 15 10 C 0.05 1.61 5.46 -17.82 -0.10 1.51 15 11 N -0.90 -27.18 13.29 55.43 0.74 -26.44 15 12 Si 0.90 22.52 29.54 -169.99 -5.02 17.50 15 13 H -0.27 -6.83 7.11 56.52 0.40 -6.43 15 14 H -0.28 -7.03 7.11 56.52 0.40 -6.63 15 15 H -0.28 -6.99 7.11 56.52 0.40 -6.58 15 16 N -0.44 -10.75 11.29 -9.77 -0.11 -10.86 15 17 C 0.12 2.51 8.93 -88.71 -0.79 1.72 15 18 S 0.16 2.32 23.35 -107.50 -2.51 -0.19 15 19 H 0.08 0.45 8.14 -51.93 -0.42 0.03 15 20 H 0.07 0.46 8.14 -51.93 -0.42 0.04 15 21 H 0.08 0.42 8.14 -51.93 -0.42 0.00 15 22 H 0.17 1.62 8.06 -52.48 -0.42 1.20 15 23 H 0.18 2.93 8.06 -52.49 -0.42 2.51 15 24 H 0.04 1.14 8.14 -51.93 -0.42 0.72 15 25 H 0.04 1.00 8.10 -51.93 -0.42 0.58 15 26 H 0.26 7.40 8.31 -40.82 -0.34 7.06 15 LS Contribution 249.87 15.07 3.77 3.77 Total: -1.00 -33.95 249.87 -7.96 -41.91 By element: Atomic # 1 Polarization: -3.61 SS G_CDS: -2.50 Total: -6.10 kcal Atomic # 6 Polarization: -9.71 SS G_CDS: -2.11 Total: -11.82 kcal Atomic # 7 Polarization: -45.48 SS G_CDS: 0.42 Total: -45.06 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.50 kcal Atomic # 16 Polarization: 2.32 SS G_CDS: -2.51 Total: -0.19 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -33.95 -7.96 -41.91 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259542561.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.415 kcal (2) G-P(sol) polarization free energy of solvation -33.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.905 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds