Wall clock time and date at job start Mon Mar 30 2020 03:22:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 N 1.39759 * 126.05072 * 2 1 4 4 C 1.30337 * 109.20318 * 180.17990 * 3 2 1 5 5 C 1.50706 * 125.67040 * 179.84268 * 4 3 2 6 6 C 1.50698 * 109.47294 * 269.69880 * 5 4 3 7 7 H 1.08005 * 119.99819 * 359.97438 * 6 5 4 8 8 C 1.37875 * 120.00046 * 180.02562 * 6 5 4 9 9 N 1.31518 * 119.99944 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 119.99979 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47454 * 59.99696 * 10 8 6 12 12 H 1.48506 * 109.47297 * 179.97438 * 10 8 6 13 13 H 1.48503 * 109.46926 * 299.99488 * 10 8 6 14 14 C 1.40968 * 108.66320 * 359.58280 * 4 3 2 15 15 S 1.75997 * 142.68412 * 180.26554 * 14 4 3 16 16 C 1.75605 * 91.35183 * 180.02562 * 15 14 4 17 17 C 1.32527 * 110.48465 * 359.97438 * 16 15 14 18 18 C 1.37935 * 107.82282 * 0.26486 * 14 4 3 19 19 H 1.09007 * 109.46985 * 270.28141 * 1 2 3 20 20 H 1.09002 * 109.47541 * 30.28125 * 1 2 3 21 21 H 1.08996 * 109.47519 * 150.28545 * 1 2 3 22 22 H 1.09001 * 109.46953 * 29.69322 * 5 4 3 23 23 H 1.09000 * 109.47318 * 149.68920 * 5 4 3 24 24 H 0.96997 * 119.99752 * 180.02562 * 9 8 6 25 25 H 1.08001 * 124.75515 * 179.97438 * 16 15 14 26 26 H 1.07992 * 122.21561 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2874 1.1299 0.0000 4 6 3.5348 0.7522 -0.0039 5 6 4.7307 1.6693 -0.0086 6 6 5.1292 1.9679 -1.4309 7 1 4.5724 1.5365 -2.2496 8 6 6.2051 2.7911 -1.6870 9 7 6.8834 3.3161 -0.6900 10 14 6.6995 3.1608 -3.4501 11 1 5.5691 3.8184 -4.1537 12 1 7.8779 4.0645 -3.4547 13 1 7.0442 1.8936 -4.1435 14 6 3.5795 -0.6568 0.0031 15 16 4.6903 -2.0219 0.0099 16 6 3.3547 -3.1620 0.0148 17 6 2.1959 -2.5189 0.0120 18 6 2.2804 -1.1204 0.0055 19 1 -0.3633 0.0050 1.0277 20 1 -0.3634 0.8874 -0.5182 21 1 -0.3634 -0.8925 -0.5094 22 1 4.4775 2.5992 0.5006 23 1 5.5607 1.1868 0.5077 24 1 7.6402 3.8955 -0.8703 25 1 3.4625 -4.2366 0.0195 26 1 1.2491 -3.0384 0.0138 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259624698.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:32 Heat of formation + Delta-G solvation = 95.257560 kcal Electronic energy + Delta-G solvation = -12460.931667 eV Core-core repulsion = 10246.921440 eV Total energy + Delta-G solvation = -2214.010228 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 222.052 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.56745 -35.31406 -33.73712 -32.31470 -28.93084 -28.14323 -25.58395 -23.25506 -22.59523 -19.82431 -19.02877 -17.04641 -16.30844 -15.02270 -14.94275 -14.53267 -14.13376 -13.87689 -12.92802 -12.65887 -12.53516 -12.16917 -11.75645 -11.26288 -11.11650 -10.71506 -10.66569 -10.39247 -10.02370 -9.77444 -9.54613 -8.84242 -8.39801 -8.04684 -7.13692 -6.02345 -4.05496 1.27118 1.94985 2.50220 2.98772 3.08219 3.34929 3.35986 3.39378 3.47198 4.47881 4.81697 5.06645 5.32547 5.37033 5.37910 5.53670 5.62621 5.90270 6.00987 6.24608 6.49035 7.17900 7.41894 7.52771 7.58389 7.92849 8.29304 8.44613 8.96460 9.57443 11.08089 Molecular weight = 222.05amu Principal moments of inertia in cm(-1) A = 0.031401 B = 0.008918 C = 0.007753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.465219 B = 3139.070631 C = 3610.719848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.118 3.882 2 N -0.394 5.394 3 N -0.271 5.271 4 C 0.169 3.831 5 C 0.087 3.913 6 C -0.509 4.509 7 H 0.056 0.944 8 C 0.062 3.938 9 N -0.894 5.894 10 Si 0.898 3.102 11 H -0.276 1.276 12 H -0.286 1.286 13 H -0.275 1.275 14 C -0.265 4.265 15 S 0.159 5.841 16 C -0.195 4.195 17 C -0.124 4.124 18 C 0.075 3.925 19 H 0.063 0.937 20 H 0.084 0.916 21 H 0.076 0.924 22 H 0.040 0.960 23 H 0.041 0.959 24 H 0.264 0.736 25 H 0.167 0.833 26 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.787 -11.731 1.831 14.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.025 4.025 2 N -0.182 5.182 3 N -0.088 5.088 4 C -0.004 4.004 5 C 0.048 3.952 6 C -0.549 4.549 7 H 0.074 0.926 8 C -0.140 4.140 9 N -0.532 5.532 10 Si 0.725 3.275 11 H -0.202 1.202 12 H -0.211 1.211 13 H -0.201 1.201 14 C -0.390 4.390 15 S 0.417 5.583 16 C -0.333 4.333 17 C -0.160 4.160 18 C -0.052 4.052 19 H 0.081 0.919 20 H 0.103 0.897 21 H 0.094 0.906 22 H 0.058 0.942 23 H 0.059 0.941 24 H 0.073 0.927 25 H 0.184 0.816 26 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -8.084 -10.742 1.882 13.575 hybrid contribution -0.943 -0.336 -0.992 1.410 sum -9.027 -11.079 0.890 14.318 Atomic orbital electron populations 1.21592 0.75092 1.03556 1.02239 1.48438 1.05054 1.01158 1.63597 1.76990 1.01302 1.06294 1.24251 1.22748 0.94016 0.90388 0.93278 1.17919 0.86202 0.92474 0.98587 1.20876 1.13642 1.29329 0.91007 0.92576 1.24944 0.96073 0.95584 0.97418 1.69940 1.20045 1.32402 1.30842 0.86557 0.77951 0.78311 0.84660 1.20189 1.21135 1.20067 1.23436 0.95700 0.98835 1.21063 1.83890 1.05811 0.92614 1.75942 1.25331 0.96167 1.03509 1.08305 1.18752 0.99260 0.89501 1.08508 1.19073 0.90071 0.90025 1.05994 0.91868 0.89728 0.90558 0.94156 0.94100 0.92676 0.81559 0.84851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 1.52 11.50 59.84 0.69 2.21 15 2 N -0.39 -7.56 4.11 -65.63 -0.27 -7.83 15 3 N -0.27 -6.35 12.48 33.82 0.42 -5.93 15 4 C 0.17 4.14 6.41 -82.19 -0.53 3.62 15 5 C 0.09 2.37 5.54 -29.03 -0.16 2.21 15 6 C -0.51 -14.81 9.09 -34.44 -0.31 -15.13 15 7 H 0.06 1.65 7.74 -52.48 -0.41 1.24 15 8 C 0.06 1.77 5.46 -17.82 -0.10 1.68 15 9 N -0.89 -26.61 13.29 55.43 0.74 -25.88 15 10 Si 0.90 21.97 29.54 -169.99 -5.02 16.95 15 11 H -0.28 -6.71 7.11 56.52 0.40 -6.31 15 12 H -0.29 -6.84 7.11 56.52 0.40 -6.43 15 13 H -0.28 -6.61 7.11 56.52 0.40 -6.21 15 14 C -0.27 -5.73 7.22 -38.66 -0.28 -6.01 15 15 S 0.16 2.76 23.31 -107.50 -2.51 0.25 15 16 C -0.19 -2.65 11.12 28.82 0.32 -2.33 15 17 C -0.12 -1.82 10.17 -40.79 -0.41 -2.24 15 18 C 0.07 1.41 7.31 -84.22 -0.62 0.79 15 19 H 0.06 0.70 8.14 -51.92 -0.42 0.28 15 20 H 0.08 1.04 8.14 -51.93 -0.42 0.61 15 21 H 0.08 0.77 8.14 -51.93 -0.42 0.35 15 22 H 0.04 1.15 8.14 -51.93 -0.42 0.73 15 23 H 0.04 1.14 8.14 -51.93 -0.42 0.71 15 24 H 0.26 7.40 8.31 -40.82 -0.34 7.06 15 25 H 0.17 1.60 8.06 -52.49 -0.42 1.18 15 26 H 0.13 1.49 8.06 -52.49 -0.42 1.07 15 LS Contribution 250.73 15.07 3.78 3.78 Total: -1.00 -32.82 250.73 -6.76 -39.58 By element: Atomic # 1 Polarization: -3.23 SS G_CDS: -2.50 Total: -5.73 kcal Atomic # 6 Polarization: -13.80 SS G_CDS: -1.40 Total: -15.19 kcal Atomic # 7 Polarization: -40.52 SS G_CDS: 0.89 Total: -39.64 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Atomic # 16 Polarization: 2.76 SS G_CDS: -2.51 Total: 0.25 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -32.82 -6.76 -39.58 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259624698.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.836 kcal (2) G-P(sol) polarization free energy of solvation -32.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.579 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds