Wall clock time and date at job start Mon Mar 30 2020 03:22:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 N 1.39759 * 126.05072 * 2 1 4 4 C 1.30337 * 109.20318 * 180.17990 * 3 2 1 5 5 C 1.50706 * 125.67040 * 179.84268 * 4 3 2 6 6 C 1.50698 * 109.47294 * 269.69880 * 5 4 3 7 7 H 1.08005 * 119.99819 * 359.97438 * 6 5 4 8 8 C 1.37875 * 120.00046 * 180.02562 * 6 5 4 9 9 N 1.31518 * 119.99944 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 119.99979 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47454 * 59.99696 * 10 8 6 12 12 H 1.48506 * 109.47297 * 179.97438 * 10 8 6 13 13 H 1.48503 * 109.46926 * 299.99488 * 10 8 6 14 14 C 1.40968 * 108.66320 * 359.58280 * 4 3 2 15 15 S 1.75997 * 142.68412 * 180.26554 * 14 4 3 16 16 C 1.75605 * 91.35183 * 180.02562 * 15 14 4 17 17 C 1.32527 * 110.48465 * 359.97438 * 16 15 14 18 18 C 1.37935 * 107.82282 * 0.26486 * 14 4 3 19 19 H 1.09007 * 109.46985 * 270.28141 * 1 2 3 20 20 H 1.09002 * 109.47541 * 30.28125 * 1 2 3 21 21 H 1.08996 * 109.47519 * 150.28545 * 1 2 3 22 22 H 1.09001 * 109.46953 * 29.69322 * 5 4 3 23 23 H 1.09000 * 109.47318 * 149.68920 * 5 4 3 24 24 H 0.96997 * 119.99752 * 180.02562 * 9 8 6 25 25 H 1.08001 * 124.75515 * 179.97438 * 16 15 14 26 26 H 1.07992 * 122.21561 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2874 1.1299 0.0000 4 6 3.5348 0.7522 -0.0039 5 6 4.7307 1.6693 -0.0086 6 6 5.1292 1.9679 -1.4309 7 1 4.5724 1.5365 -2.2496 8 6 6.2051 2.7911 -1.6870 9 7 6.8834 3.3161 -0.6900 10 14 6.6995 3.1608 -3.4501 11 1 5.5691 3.8184 -4.1537 12 1 7.8779 4.0645 -3.4547 13 1 7.0442 1.8936 -4.1435 14 6 3.5795 -0.6568 0.0031 15 16 4.6903 -2.0219 0.0099 16 6 3.3547 -3.1620 0.0148 17 6 2.1959 -2.5189 0.0120 18 6 2.2804 -1.1204 0.0055 19 1 -0.3633 0.0050 1.0277 20 1 -0.3634 0.8874 -0.5182 21 1 -0.3634 -0.8925 -0.5094 22 1 4.4775 2.5992 0.5006 23 1 5.5607 1.1868 0.5077 24 1 7.6402 3.8955 -0.8703 25 1 3.4625 -4.2366 0.0195 26 1 1.2491 -3.0384 0.0138 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259624698.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:32 Heat of formation + Delta-G solvation = 73.313580 kcal Electronic energy + Delta-G solvation = -12461.883230 eV Core-core repulsion = 10246.921440 eV Total energy + Delta-G solvation = -2214.961790 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 222.052 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -42.07952 -36.67658 -35.61476 -34.09838 -30.81045 -29.59426 -27.16576 -25.13011 -23.97489 -21.42864 -20.39750 -18.67785 -18.38973 -16.60101 -16.44564 -16.13918 -15.63449 -14.97883 -14.51102 -14.29966 -14.02623 -13.84326 -13.32462 -13.05743 -12.71322 -12.54862 -12.44308 -11.96873 -11.62561 -11.60861 -11.56243 -10.63329 -10.42227 -9.49711 -8.56580 -8.22236 -6.37409 -0.02311 0.62641 1.25445 1.37111 1.42293 1.48515 1.56910 1.69983 1.80792 2.40771 3.07258 3.59928 3.82753 4.07736 4.38239 4.42885 4.47516 4.63559 4.72871 5.01778 5.13431 5.20099 5.44764 5.49962 5.66115 6.07963 6.18338 6.69375 6.77423 7.30291 8.86548 Molecular weight = 222.05amu Principal moments of inertia in cm(-1) A = 0.031401 B = 0.008918 C = 0.007753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.465219 B = 3139.070631 C = 3610.719848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -0.389 5.389 3 N -0.307 5.307 4 C 0.136 3.864 5 C 0.100 3.900 6 C -0.530 4.530 7 H 0.046 0.954 8 C 0.012 3.988 9 N -0.925 5.925 10 Si 0.969 3.031 11 H -0.271 1.271 12 H -0.273 1.273 13 H -0.265 1.265 14 C -0.318 4.318 15 S 0.124 5.876 16 C -0.152 4.152 17 C -0.131 4.131 18 C 0.086 3.914 19 H 0.085 0.915 20 H 0.086 0.914 21 H 0.114 0.886 22 H 0.008 0.992 23 H 0.020 0.980 24 H 0.269 0.731 25 H 0.220 0.780 26 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.351 -14.367 0.767 17.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.036 4.036 2 N -0.178 5.178 3 N -0.126 5.126 4 C -0.036 4.036 5 C 0.061 3.939 6 C -0.568 4.568 7 H 0.064 0.936 8 C -0.187 4.187 9 N -0.565 5.565 10 Si 0.792 3.208 11 H -0.196 1.196 12 H -0.198 1.198 13 H -0.190 1.190 14 C -0.442 4.442 15 S 0.381 5.619 16 C -0.290 4.290 17 C -0.165 4.165 18 C -0.043 4.043 19 H 0.103 0.897 20 H 0.105 0.895 21 H 0.133 0.867 22 H 0.027 0.973 23 H 0.038 0.962 24 H 0.078 0.922 25 H 0.236 0.764 26 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -9.677 -13.373 0.827 16.528 hybrid contribution -0.573 0.392 -0.595 0.914 sum -10.250 -12.981 0.233 16.542 Atomic orbital electron populations 1.22115 0.71556 1.05630 1.04317 1.48859 1.06814 1.00237 1.61866 1.76793 1.01595 1.08969 1.25223 1.22227 0.93589 0.91821 0.95935 1.17508 0.87361 0.91631 0.97402 1.21074 1.14249 1.30038 0.91488 0.93559 1.25871 0.95679 0.94945 1.02230 1.70057 1.20434 1.32721 1.33245 0.85452 0.77906 0.78599 0.78822 1.19649 1.19805 1.18977 1.23651 0.98447 0.98277 1.23832 1.83915 1.07989 0.92890 1.77073 1.25893 0.93559 1.04922 1.04591 1.19178 1.01710 0.87147 1.08429 1.19762 0.88785 0.91720 1.04034 0.89692 0.89493 0.86720 0.97337 0.96176 0.92189 0.76367 0.79975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.38 11.50 127.77 1.47 3.85 15 2 N -0.39 -14.51 4.11 -361.57 -1.49 -16.00 15 3 N -0.31 -14.87 12.48 -46.93 -0.59 -15.46 15 4 C 0.14 7.04 6.41 43.45 0.28 7.32 15 5 C 0.10 5.87 5.54 29.10 0.16 6.03 15 6 C -0.53 -32.32 9.09 25.60 0.23 -32.09 15 7 H 0.05 2.84 7.74 -2.91 -0.02 2.81 15 8 C 0.01 0.70 5.46 84.65 0.46 1.16 15 9 N -0.93 -56.99 13.29 21.45 0.28 -56.70 15 10 Si 0.97 45.70 29.54 68.60 2.03 47.73 15 11 H -0.27 -12.52 7.11 99.48 0.71 -11.81 15 12 H -0.27 -12.25 7.11 99.48 0.71 -11.55 15 13 H -0.27 -12.00 7.11 99.48 0.71 -11.30 15 14 C -0.32 -13.95 7.22 22.87 0.17 -13.79 15 15 S 0.12 4.23 23.31 -56.49 -1.32 2.92 15 16 C -0.15 -3.45 11.12 66.68 0.74 -2.70 15 17 C -0.13 -3.21 10.17 21.58 0.22 -3.00 15 18 C 0.09 3.08 7.31 38.46 0.28 3.36 15 19 H 0.08 1.62 8.14 -2.38 -0.02 1.60 15 20 H 0.09 1.97 8.14 -2.39 -0.02 1.95 15 21 H 0.11 1.78 8.14 -2.39 -0.02 1.76 15 22 H 0.01 0.52 8.14 -2.39 -0.02 0.51 15 23 H 0.02 1.22 8.14 -2.39 -0.02 1.20 15 24 H 0.27 15.42 8.31 -92.71 -0.77 14.65 15 25 H 0.22 2.68 8.06 -2.91 -0.02 2.65 15 26 H 0.18 2.76 8.06 -2.91 -0.02 2.74 15 Total: -1.00 -76.27 250.73 4.12 -72.15 By element: Atomic # 1 Polarization: -5.97 SS G_CDS: 1.18 Total: -4.78 kcal Atomic # 6 Polarization: -33.87 SS G_CDS: 4.01 Total: -29.86 kcal Atomic # 7 Polarization: -86.37 SS G_CDS: -1.79 Total: -88.16 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.73 kcal Atomic # 16 Polarization: 4.23 SS G_CDS: -1.32 Total: 2.92 kcal Total: -76.27 4.12 -72.15 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259624698.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.468 kcal (2) G-P(sol) polarization free energy of solvation -76.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.154 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds