Wall clock time and date at job start Mon Mar 30 2020 02:47:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30722 * 1 3 3 Si 1.86802 * 119.99849 * 2 1 4 4 H 1.48496 * 109.46772 * 239.99754 * 3 2 1 5 5 H 1.48492 * 109.47321 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46999 * 120.00264 * 3 2 1 7 7 C 1.40210 * 119.99860 * 180.02562 * 2 1 3 8 8 H 1.07992 * 119.99753 * 180.02562 * 7 2 1 9 9 C 1.39286 * 119.99906 * 359.97438 * 7 2 1 10 10 N 1.33091 * 125.52438 * 0.02562 * 9 7 2 11 11 C 1.32512 * 109.00105 * 179.71703 * 10 9 7 12 12 C 1.38887 * 107.63896 * 0.44404 * 11 10 9 13 13 C 1.46835 * 126.58737 * 179.83075 * 12 11 10 14 14 C 1.36825 * 123.32260 * 179.70811 * 13 12 11 15 15 S 1.70938 * 108.68639 * 179.97438 * 14 13 12 16 16 C 1.70731 * 91.22881 * 0.02562 * 15 14 13 17 17 N 1.28673 * 110.85035 * 0.02562 * 16 15 14 18 18 O 1.35022 * 125.52274 * 180.02562 * 9 7 2 19 19 H 0.97005 * 119.99971 * 359.97438 * 1 2 3 20 20 H 1.08005 * 126.18060 * 180.30396 * 11 10 9 21 21 H 1.08004 * 125.65904 * 359.71787 * 14 13 12 22 22 H 1.07998 * 124.57316 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3072 0.0000 0.0000 3 14 2.2412 1.6178 0.0000 4 1 3.0949 1.6964 -1.2125 5 1 1.2762 2.7464 0.0006 6 1 3.0950 1.6964 1.2125 7 6 2.0082 -1.2143 -0.0005 8 1 3.0882 -1.2143 -0.0001 9 6 1.3118 -2.4205 -0.0005 10 7 -0.0130 -2.5486 -0.0005 11 6 -0.3219 -3.8372 -0.0067 12 6 0.8671 -4.5550 -0.0006 13 6 1.0070 -6.0166 -0.0006 14 6 2.2168 -6.6559 -0.0001 15 16 1.9444 -8.3435 0.0003 16 6 0.2535 -8.1076 -0.0010 17 7 -0.0340 -6.8534 -0.0022 18 8 1.8711 -3.6494 -0.0005 19 1 -0.4850 0.8401 0.0004 20 1 -1.3182 -4.2540 -0.0129 21 1 3.1834 -6.1743 -0.0040 22 1 -0.4763 -8.9037 -0.0016 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259626947.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:37 Heat of formation + Delta-G solvation = 53.995128 kcal Electronic energy + Delta-G solvation = -12105.329935 eV Core-core repulsion = 9753.697339 eV Total energy + Delta-G solvation = -2351.632596 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 222.020 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.96548 -38.86556 -34.10869 -32.59298 -30.63960 -28.67762 -26.20181 -24.15989 -21.32755 -20.88036 -19.06871 -17.96472 -17.17248 -15.80561 -15.30014 -14.82866 -14.34662 -13.71477 -13.63181 -12.93346 -12.76345 -12.01468 -11.77209 -11.42406 -11.04016 -10.76921 -10.55575 -9.87876 -9.41263 -9.36286 -9.18266 -8.84929 -8.37725 -7.10249 -6.89665 -4.74776 1.11124 1.84436 2.27176 2.49140 2.95094 2.96713 2.98682 3.69419 3.78875 4.15339 4.39997 5.05678 5.18329 5.76674 5.92627 6.03048 6.14868 6.63604 6.73482 6.89585 7.52947 7.72326 7.95753 8.16969 8.30153 8.55234 9.77129 10.01683 Molecular weight = 222.02amu Principal moments of inertia in cm(-1) A = 0.082562 B = 0.006319 C = 0.005882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 339.059032 B = 4429.685888 C = 4758.902370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.711 5.711 2 C 0.070 3.930 3 Si 0.934 3.066 4 H -0.261 1.261 5 H -0.273 1.273 6 H -0.261 1.261 7 C -0.413 4.413 8 H 0.097 0.903 9 C 0.337 3.663 10 N -0.534 5.534 11 C 0.078 3.922 12 C -0.179 4.179 13 C 0.197 3.803 14 C -0.332 4.332 15 S 0.131 5.869 16 C 0.004 3.996 17 N -0.454 5.454 18 O -0.239 6.239 19 H 0.285 0.715 20 H 0.158 0.842 21 H 0.170 0.830 22 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.710 -8.185 -0.014 8.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.333 5.333 2 C -0.158 4.158 3 Si 0.756 3.244 4 H -0.185 1.185 5 H -0.198 1.198 6 H -0.185 1.185 7 C -0.446 4.446 8 H 0.115 0.885 9 C 0.159 3.841 10 N -0.262 5.262 11 C -0.077 4.077 12 C -0.235 4.235 13 C 0.068 3.932 14 C -0.471 4.471 15 S 0.383 5.617 16 C -0.295 4.295 17 N -0.170 5.170 18 O -0.136 6.136 19 H 0.096 0.904 20 H 0.175 0.825 21 H 0.187 0.813 22 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges 2.212 -8.176 -0.012 8.470 hybrid contribution 0.636 0.953 -0.001 1.146 sum 2.847 -7.222 -0.014 7.763 Atomic orbital electron populations 1.70026 1.07361 1.29450 1.26511 1.25994 0.95160 1.01250 0.93370 0.85947 0.79671 0.78489 0.80260 1.18493 1.19750 1.18499 1.18218 0.94986 0.86110 1.45308 0.88465 1.22263 0.87072 0.83087 0.91674 1.71416 1.11458 1.15155 1.28161 1.23786 0.97136 0.90436 0.96375 1.19406 0.87057 0.86205 1.30828 1.17719 0.86028 0.90578 0.98888 1.26316 1.03405 0.96672 1.20731 1.82292 1.05325 1.05468 1.68626 1.28209 0.98701 0.96743 1.05821 1.66667 1.33305 1.01462 1.15521 1.84476 1.35566 1.16384 1.77212 0.90405 0.82492 0.81296 0.78857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -18.62 11.85 55.56 0.66 -17.97 14 2 C 0.07 1.72 5.50 -17.28 -0.10 1.63 14 3 Si 0.93 17.74 29.56 -169.99 -5.03 12.71 14 4 H -0.26 -4.84 7.11 56.52 0.40 -4.44 14 5 H -0.27 -5.00 7.11 56.52 0.40 -4.59 14 6 H -0.26 -4.84 7.11 56.52 0.40 -4.44 14 7 C -0.41 -11.02 9.42 -38.45 -0.36 -11.38 14 8 H 0.10 2.37 7.85 -52.49 -0.41 1.96 14 9 C 0.34 9.69 7.70 -16.62 -0.13 9.56 14 10 N -0.53 -15.51 9.34 -12.88 -0.12 -15.63 14 11 C 0.08 2.06 11.85 -17.02 -0.20 1.86 14 12 C -0.18 -4.63 7.21 -35.87 -0.26 -4.89 14 13 C 0.20 4.36 6.75 -84.15 -0.57 3.79 14 14 C -0.33 -6.29 10.98 30.22 0.33 -5.96 14 15 S 0.13 1.82 22.96 -107.50 -2.47 -0.65 14 16 C 0.00 0.07 12.15 51.44 0.63 0.69 14 17 N -0.45 -8.97 10.56 -12.12 -0.13 -9.10 14 18 O -0.24 -6.63 10.81 1.13 0.01 -6.61 14 19 H 0.28 6.63 8.29 -40.82 -0.34 6.29 14 20 H 0.16 3.71 8.06 -52.48 -0.42 3.29 14 21 H 0.17 3.14 8.06 -52.48 -0.42 2.72 14 22 H 0.19 1.99 8.06 -52.49 -0.42 1.56 14 LS Contribution 228.27 15.07 3.44 3.44 Total: -1.00 -31.05 228.27 -5.10 -36.15 By element: Atomic # 1 Polarization: 3.15 SS G_CDS: -0.81 Total: 2.34 kcal Atomic # 6 Polarization: -4.04 SS G_CDS: -0.66 Total: -4.69 kcal Atomic # 7 Polarization: -43.10 SS G_CDS: 0.41 Total: -42.69 kcal Atomic # 8 Polarization: -6.63 SS G_CDS: 0.01 Total: -6.61 kcal Atomic # 14 Polarization: 17.74 SS G_CDS: -5.03 Total: 12.71 kcal Atomic # 16 Polarization: 1.82 SS G_CDS: -2.47 Total: -0.65 kcal Total LS contribution 3.44 Total: 3.44 kcal Total: -31.05 -5.10 -36.15 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259626947.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.147 kcal (2) G-P(sol) polarization free energy of solvation -31.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.151 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds