Wall clock time and date at job start Mon Mar 30 2020 02:53:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00060 * 2 1 4 4 H 1.48496 * 109.47067 * 269.99859 * 3 2 1 5 5 H 1.48498 * 109.47308 * 30.00026 * 3 2 1 6 6 H 1.48508 * 109.47420 * 149.99793 * 3 2 1 7 7 C 1.37875 * 120.00370 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99595 * 0.02562 * 7 2 1 9 9 C 1.50694 * 120.00532 * 179.97438 * 7 2 1 10 10 C 1.50702 * 109.47555 * 180.02562 * 9 7 2 11 11 N 1.29950 * 126.28481 * 269.98343 * 10 9 7 12 12 O 1.21305 * 110.24778 * 179.72419 * 11 10 9 13 13 C 1.33644 * 109.80950 * 0.46246 * 12 11 10 14 14 C 1.50703 * 126.55078 * 179.80368 * 13 12 11 15 15 F 1.39905 * 109.47157 * 269.68861 * 14 13 12 16 16 F 1.39900 * 109.47159 * 149.69162 * 14 13 12 17 17 F 1.39897 * 109.47274 * 29.68853 * 14 13 12 18 18 N 1.31128 * 106.90099 * 359.54338 * 13 12 11 19 19 H 0.96996 * 119.99506 * 0.02562 * 1 2 3 20 20 H 1.09010 * 109.47098 * 60.00546 * 9 7 2 21 21 H 1.09001 * 109.47152 * 300.00713 * 9 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0000 10 6 4.0139 -2.6148 0.0001 11 7 4.2710 -3.3395 1.0476 12 8 4.6543 -4.4406 0.7126 13 6 4.6884 -4.5220 -0.6209 14 6 5.1107 -5.7167 -1.4366 15 9 6.4848 -5.6464 -1.6899 16 9 4.4128 -5.7237 -2.6491 17 9 4.8265 -6.8891 -0.7282 18 7 4.2789 -3.3656 -1.0840 19 1 -0.4849 0.8400 -0.0004 20 1 3.8753 -0.6796 0.8896 21 1 3.8746 -0.6807 -0.8905 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259634569.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:36 Heat of formation + Delta-G solvation = -99.276112 kcal Electronic energy + Delta-G solvation = -14811.780106 eV Core-core repulsion = 11468.891559 eV Total energy + Delta-G solvation = -3342.888547 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 222.036 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -51.56155 -49.06188 -49.05434 -47.09338 -37.68707 -35.50642 -34.33439 -31.52495 -28.70032 -26.27799 -24.66755 -22.98593 -20.30113 -20.19979 -19.73384 -19.43545 -18.84936 -18.30851 -16.56752 -15.84953 -15.82046 -15.41960 -15.39907 -15.13998 -15.13228 -14.84011 -14.39823 -13.97680 -13.77447 -13.52596 -12.83202 -12.66531 -12.44644 -12.15743 -11.81314 -11.22721 -10.88461 -8.40190 -6.51388 -0.50519 0.29378 0.83637 1.37810 1.39761 1.50384 1.59643 1.94228 2.29514 2.74638 2.85718 2.92894 2.98011 3.29712 4.14931 4.50337 4.73076 4.92564 5.29249 6.03058 6.50171 6.73046 7.12043 8.76133 Molecular weight = 222.04amu Principal moments of inertia in cm(-1) A = 0.054608 B = 0.007022 C = 0.006940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 512.620136 B = 3986.283310 C = 4033.734371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C 0.018 3.982 3 Si 0.955 3.045 4 H -0.258 1.258 5 H -0.278 1.278 6 H -0.239 1.239 7 C -0.539 4.539 8 H 0.024 0.976 9 C 0.070 3.930 10 C 0.206 3.794 11 N -0.376 5.376 12 O 0.128 5.872 13 C 0.070 3.930 14 C 0.608 3.392 15 F -0.140 7.140 16 F -0.142 7.142 17 F -0.141 7.141 18 N -0.432 5.432 19 H 0.274 0.726 20 H 0.065 0.935 21 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.158 -9.320 -2.577 16.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.181 4.181 3 Si 0.776 3.224 4 H -0.183 1.183 5 H -0.204 1.204 6 H -0.162 1.162 7 C -0.578 4.578 8 H 0.042 0.958 9 C 0.031 3.969 10 C -0.066 4.066 11 N -0.076 5.076 12 O 0.061 5.939 13 C -0.154 4.154 14 C 0.551 3.449 15 F -0.121 7.121 16 F -0.123 7.123 17 F -0.122 7.122 18 N -0.167 5.167 19 H 0.083 0.917 20 H 0.083 0.917 21 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 12.797 -8.624 -2.068 15.569 hybrid contribution -0.305 0.254 -0.096 0.408 sum 12.492 -8.370 -2.164 15.192 Atomic orbital electron populations 1.70024 1.08456 1.28964 1.50330 1.25938 0.95734 1.03542 0.92913 0.85600 0.79631 0.77270 0.79905 1.18299 1.20371 1.16190 1.20790 0.89493 0.93630 1.53855 0.95780 1.18222 0.95162 0.82769 1.00724 1.26369 0.97163 1.01466 0.81572 1.74625 1.16947 0.92533 1.23459 1.85349 1.59355 1.26880 1.22282 1.28859 1.03931 0.97774 0.84853 1.15505 0.75721 0.77263 0.76385 1.93342 1.28874 1.95943 1.93954 1.93340 1.78904 1.96060 1.43989 1.93338 1.93229 1.47615 1.78049 1.71833 1.13307 1.01126 1.30426 0.91730 0.91715 0.91347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.37 13.96 21.45 0.30 -57.07 14 2 C 0.02 1.01 5.47 84.65 0.46 1.47 14 3 Si 0.95 41.28 27.47 68.60 1.88 43.16 14 4 H -0.26 -10.63 7.11 99.48 0.71 -9.92 14 5 H -0.28 -11.82 7.11 99.48 0.71 -11.11 14 6 H -0.24 -9.31 6.54 99.48 0.65 -8.66 14 7 C -0.54 -30.82 9.65 25.60 0.25 -30.57 14 8 H 0.02 1.56 7.98 -2.91 -0.02 1.54 14 9 C 0.07 3.26 4.67 29.10 0.14 3.39 14 10 C 0.21 8.93 7.41 138.46 1.03 9.95 14 11 N -0.38 -15.26 12.16 -60.30 -0.73 -15.99 14 12 O 0.13 4.29 11.30 74.82 0.85 5.14 14 13 C 0.07 2.22 7.70 88.38 0.68 2.90 14 14 C 0.61 14.18 3.57 71.24 0.25 14.44 14 15 F -0.14 -2.89 17.30 44.97 0.78 -2.11 14 16 F -0.14 -3.52 17.27 44.97 0.78 -2.74 14 17 F -0.14 -2.92 17.30 44.97 0.78 -2.14 14 18 N -0.43 -17.00 11.51 -303.17 -3.49 -20.49 14 19 H 0.27 15.39 8.31 -92.71 -0.77 14.62 14 20 H 0.06 2.84 7.20 -2.38 -0.02 2.83 14 21 H 0.07 2.96 7.57 -2.39 -0.02 2.94 14 Total: -1.00 -63.61 218.53 5.18 -58.43 By element: Atomic # 1 Polarization: -9.01 SS G_CDS: 1.24 Total: -7.77 kcal Atomic # 6 Polarization: -1.23 SS G_CDS: 2.81 Total: 1.58 kcal Atomic # 7 Polarization: -89.62 SS G_CDS: -3.92 Total: -93.54 kcal Atomic # 8 Polarization: 4.29 SS G_CDS: 0.85 Total: 5.14 kcal Atomic # 9 Polarization: -9.32 SS G_CDS: 2.33 Total: -6.99 kcal Atomic # 14 Polarization: 41.28 SS G_CDS: 1.88 Total: 43.16 kcal Total: -63.61 5.18 -58.43 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259634569.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.843 kcal (2) G-P(sol) polarization free energy of solvation -63.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds