Wall clock time and date at job start Mon Mar 30 2020 03:03:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31234 * 1 3 3 Si 1.86801 * 120.00043 * 2 1 4 4 H 1.48504 * 109.47266 * 240.00220 * 3 2 1 5 5 H 1.48504 * 109.46970 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47383 * 119.99627 * 3 2 1 7 7 C 1.39017 * 120.00231 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00504 * 180.02562 * 7 2 1 9 9 N 1.37615 * 119.99845 * 359.71900 * 7 2 1 10 10 N 1.40614 * 127.42258 * 359.96719 * 9 7 2 11 11 N 1.28940 * 106.67132 * 179.82337 * 10 9 7 12 12 N 1.28411 * 110.31329 * 0.44911 * 11 10 9 13 13 C 1.30731 * 110.68190 * 359.70325 * 12 11 10 14 14 C 1.50697 * 126.41102 * 179.97438 * 13 12 11 15 15 C 1.52995 * 109.46992 * 270.02724 * 14 13 12 16 16 F 1.39895 * 109.47272 * 59.99734 * 15 14 13 17 17 F 1.39899 * 109.47207 * 179.97438 * 15 14 13 18 18 F 1.39897 * 109.47036 * 299.99772 * 15 14 13 19 19 H 0.97004 * 119.99649 * 0.02562 * 1 2 3 20 20 H 1.09004 * 109.46721 * 30.02273 * 14 13 12 21 21 H 1.08999 * 109.47593 * 150.02095 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3123 0.0000 0.0000 3 14 2.2464 1.6177 0.0000 4 1 3.1001 1.6965 -1.2125 5 1 1.2813 2.7465 -0.0006 6 1 3.1001 1.6965 1.2125 7 6 2.0075 -1.2039 -0.0005 8 1 3.0875 -1.2039 -0.0001 9 7 1.3194 -2.3957 0.0048 10 7 -0.0749 -2.5773 0.0117 11 7 -0.2821 -3.8500 0.0111 12 7 0.8348 -4.4835 0.0139 13 6 1.8398 -3.6475 0.0103 14 6 3.3031 -4.0078 0.0124 15 6 3.7976 -4.1235 1.4556 16 9 3.0714 -5.1182 2.1191 17 9 5.1559 -4.4585 1.4577 18 9 3.6177 -2.9000 2.1097 19 1 -0.4850 0.8401 -0.0004 20 1 3.4432 -4.9611 -0.4972 21 1 3.8690 -3.2328 -0.5046 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259661017.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:11 Heat of formation + Delta-G solvation = -76.080306 kcal Electronic energy + Delta-G solvation = -15448.303708 eV Core-core repulsion = 12138.713758 eV Total energy + Delta-G solvation = -3309.589950 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 222.042 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -51.03382 -48.53463 -48.51637 -43.07245 -36.65377 -34.73135 -33.36031 -30.65457 -28.10083 -25.05672 -24.08185 -22.07940 -20.19803 -19.43764 -19.42898 -18.46844 -17.56922 -16.56638 -16.12590 -15.65677 -15.47703 -15.08779 -14.95022 -14.72115 -14.65450 -14.48422 -13.94296 -13.34165 -13.25898 -13.10326 -12.96214 -12.26149 -12.15621 -12.13492 -11.16816 -10.85563 -10.50086 -8.87686 -6.86748 0.70212 1.36450 1.57249 1.58815 1.65065 1.93353 2.05672 2.33070 2.73762 2.97464 3.06325 3.13953 3.74707 4.03091 4.36436 4.54004 4.84997 5.12282 5.38595 5.74543 6.36019 6.80939 8.11938 8.34608 Molecular weight = 222.04amu Principal moments of inertia in cm(-1) A = 0.029786 B = 0.012744 C = 0.009609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.823314 B = 2196.648980 C = 2913.168435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.789 5.789 2 C 0.000 4.000 3 Si 1.028 2.972 4 H -0.240 1.240 5 H -0.271 1.271 6 H -0.249 1.249 7 C -0.303 4.303 8 H 0.164 0.836 9 N -0.152 5.152 10 N -0.164 5.164 11 N -0.174 5.174 12 N -0.345 5.345 13 C 0.030 3.970 14 C -0.046 4.046 15 C 0.458 3.542 16 F -0.191 7.191 17 F -0.172 7.172 18 F -0.190 7.190 19 H 0.297 0.703 20 H 0.157 0.843 21 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.161 1.481 0.003 12.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.415 5.415 2 C -0.218 4.218 3 Si 0.844 3.156 4 H -0.163 1.163 5 H -0.196 1.196 6 H -0.172 1.172 7 C -0.444 4.444 8 H 0.182 0.818 9 N 0.069 4.931 10 N -0.148 5.148 11 N -0.163 5.163 12 N -0.209 5.209 13 C -0.234 4.234 14 C -0.087 4.087 15 C 0.403 3.597 16 F -0.173 7.173 17 F -0.154 7.154 18 F -0.171 7.171 19 H 0.107 0.893 20 H 0.174 0.826 21 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 10.486 1.087 0.034 10.542 hybrid contribution 0.575 0.900 0.373 1.132 sum 11.061 1.988 0.407 11.245 Atomic orbital electron populations 1.70239 1.09016 1.31775 1.30465 1.27250 0.96565 1.05156 0.92854 0.84511 0.77836 0.72064 0.81234 1.16320 1.19586 1.17237 1.21352 0.94281 0.79959 1.48838 0.81846 1.47885 1.05583 1.06968 1.32660 1.82985 0.90657 1.09305 1.31850 1.77539 1.18916 1.00232 1.19647 1.73606 0.94650 1.29533 1.23136 1.24342 0.97629 0.82130 1.19284 1.21008 0.86398 1.09824 0.91437 1.20619 0.75161 0.73254 0.90661 1.93179 1.78041 1.62555 1.83527 1.93183 1.32791 1.92375 1.97034 1.93202 1.95086 1.44839 1.83983 0.89251 0.82562 0.83112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -40.04 11.93 21.66 0.26 -39.78 14 2 C 0.00 0.00 5.50 84.97 0.47 0.47 14 3 Si 1.03 31.85 29.55 68.60 2.03 33.88 14 4 H -0.24 -6.69 7.11 99.48 0.71 -5.99 14 5 H -0.27 -8.38 7.11 99.48 0.71 -7.67 14 6 H -0.25 -7.30 7.11 99.48 0.71 -6.60 14 7 C -0.30 -13.85 9.95 83.97 0.84 -13.01 14 8 H 0.16 6.08 7.23 -2.91 -0.02 6.06 14 9 N -0.15 -7.88 3.77 -182.00 -0.69 -8.57 14 10 N -0.16 -9.72 11.90 37.02 0.44 -9.28 14 11 N -0.17 -10.14 13.38 37.02 0.50 -9.65 14 12 N -0.35 -18.17 12.15 -50.01 -0.61 -18.77 14 13 C 0.03 1.41 6.85 137.89 0.94 2.35 14 14 C -0.05 -1.44 5.57 29.85 0.17 -1.27 14 15 C 0.46 14.85 3.15 71.98 0.23 15.08 14 16 F -0.19 -7.13 17.02 44.97 0.77 -6.37 14 17 F -0.17 -4.64 17.32 44.97 0.78 -3.86 14 18 F -0.19 -6.98 16.93 44.97 0.76 -6.22 14 19 H 0.30 13.54 8.30 -92.71 -0.77 12.77 14 20 H 0.16 3.96 8.14 -2.39 -0.02 3.94 14 21 H 0.15 3.75 7.51 -2.39 -0.02 3.73 14 Total: -1.00 -66.93 217.47 8.16 -58.77 By element: Atomic # 1 Polarization: 4.94 SS G_CDS: 1.29 Total: 6.23 kcal Atomic # 6 Polarization: 0.97 SS G_CDS: 2.64 Total: 3.61 kcal Atomic # 7 Polarization: -85.94 SS G_CDS: -0.10 Total: -86.04 kcal Atomic # 9 Polarization: -18.75 SS G_CDS: 2.31 Total: -16.45 kcal Atomic # 14 Polarization: 31.85 SS G_CDS: 2.03 Total: 33.88 kcal Total: -66.93 8.16 -58.77 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259661017.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.314 kcal (2) G-P(sol) polarization free energy of solvation -66.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds