Wall clock time and date at job start Mon Mar 30 2020 03:14:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48502 * 109.47432 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46890 * 299.99896 * 3 2 1 6 6 H 1.48501 * 109.47062 * 59.99944 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 C 1.50697 * 109.47466 * 179.97438 * 10 9 7 12 12 N 1.30379 * 125.56572 * 269.69682 * 11 10 9 13 13 C 1.33765 * 109.48408 * 179.82933 * 12 11 10 14 14 C 1.36261 * 107.82451 * 0.42874 * 13 12 11 15 15 S 1.75985 * 143.24513 * 179.77313 * 14 13 12 16 16 C 1.75795 * 90.73505 * 179.97438 * 15 14 13 17 17 C 1.30867 * 109.98107 * 359.97438 * 16 15 14 18 18 N 1.36069 * 107.43368 * 359.74523 * 14 13 12 19 19 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 20 20 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 21 21 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 22 22 H 1.09002 * 109.47153 * 299.99998 * 10 9 7 23 23 H 1.08998 * 109.47533 * 59.99628 * 10 9 7 24 24 H 1.08006 * 126.08717 * 180.15377 * 13 12 11 25 25 H 1.08001 * 125.01024 * 179.97438 * 16 15 14 26 26 H 1.08006 * 121.79966 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4916 -4.9672 0.0012 12 7 1.1177 -5.6264 1.0620 13 6 0.4699 -6.7368 0.6921 14 6 0.4488 -6.7731 -0.6699 15 16 -0.0999 -7.7220 -2.0467 16 6 0.5805 -6.5431 -3.1592 17 6 1.1427 -5.5692 -2.4898 18 7 1.0913 -5.6603 -1.1174 19 1 -0.4850 0.8401 0.0004 20 1 0.6239 -2.5567 0.8903 21 1 0.6246 -2.5571 -0.8897 22 1 2.8718 -3.6044 -0.8895 23 1 2.8718 -3.6044 0.8904 24 1 0.0439 -7.4755 1.3549 25 1 0.5405 -6.6124 -4.2362 26 1 1.6216 -4.7388 -2.9875 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259670217.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:15 Heat of formation + Delta-G solvation = 81.077050 kcal Electronic energy + Delta-G solvation = -12377.102925 eV Core-core repulsion = 10162.477784 eV Total energy + Delta-G solvation = -2214.625141 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 222.052 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -42.34368 -36.38265 -34.01434 -31.73862 -30.16040 -28.40349 -25.22281 -23.39686 -21.79430 -21.24501 -19.39357 -17.81075 -16.42079 -15.61635 -15.49642 -14.65490 -14.48880 -13.97468 -13.26862 -12.90520 -12.72005 -12.31224 -11.85899 -11.22312 -11.13099 -10.99070 -10.65197 -10.08452 -9.99893 -9.94176 -9.65476 -9.21779 -9.00965 -8.41930 -7.07082 -6.05716 -4.10049 1.16445 1.36000 1.83431 2.42265 2.89233 3.28211 3.34991 3.36728 3.40438 4.40634 4.77608 4.89417 5.16955 5.24710 5.30237 5.55641 5.73736 6.06545 6.36540 6.41964 6.70681 6.75490 7.38944 7.56223 7.68070 7.91905 8.24353 8.29480 8.96498 9.54601 11.05373 Molecular weight = 222.05amu Principal moments of inertia in cm(-1) A = 0.050712 B = 0.006376 C = 0.006049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 552.006594 B = 4390.596727 C = 4628.001831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.059 3.941 3 Si 0.895 3.105 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.524 4.524 8 H 0.059 0.941 9 C 0.031 3.969 10 C -0.034 4.034 11 C 0.259 3.741 12 N -0.459 5.459 13 C 0.018 3.982 14 C -0.108 4.108 15 S 0.101 5.899 16 C -0.227 4.227 17 C 0.070 3.930 18 N -0.412 5.412 19 H 0.261 0.739 20 H 0.026 0.974 21 H 0.013 0.987 22 H 0.068 0.932 23 H 0.089 0.911 24 H 0.176 0.824 25 H 0.187 0.813 26 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.288 -13.315 -6.245 14.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.143 4.143 3 Si 0.722 3.278 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.562 4.562 8 H 0.078 0.922 9 C -0.008 4.008 10 C -0.073 4.073 11 C -0.004 4.004 12 N -0.173 5.173 13 C -0.139 4.139 14 C -0.330 4.330 15 S 0.356 5.644 16 C -0.364 4.364 17 C -0.059 4.059 18 N -0.091 5.091 19 H 0.071 0.929 20 H 0.044 0.956 21 H 0.032 0.968 22 H 0.086 0.914 23 H 0.108 0.892 24 H 0.193 0.807 25 H 0.204 0.796 26 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 0.615 -14.136 -5.686 15.249 hybrid contribution 0.809 1.932 -0.782 2.236 sum 1.424 -12.204 -6.467 13.885 Atomic orbital electron populations 1.69986 1.06137 1.26683 1.50282 1.25020 0.94838 0.99360 0.95084 0.86497 0.80084 0.83561 0.77634 1.19620 1.21031 1.20888 1.21192 0.93124 0.90564 1.51349 0.92241 1.19091 0.93595 0.90146 0.97920 1.20473 0.97804 0.86222 1.02808 1.24567 1.01208 0.97119 0.77490 1.70212 1.14720 1.05575 1.26837 1.21752 1.04989 0.98396 0.88770 1.24376 1.12280 0.96417 0.99967 1.84213 1.64571 1.24476 0.91191 1.24889 1.08034 0.98958 1.04494 1.20541 1.02649 1.01633 0.81027 1.44198 1.41103 1.18204 1.05605 0.92912 0.95564 0.96820 0.91381 0.89230 0.80697 0.79626 0.80072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.73 13.29 55.43 0.74 -26.00 15 2 C 0.06 1.66 5.46 -17.82 -0.10 1.57 15 3 Si 0.89 21.29 29.54 -169.99 -5.02 16.27 15 4 H -0.27 -6.28 7.11 56.52 0.40 -5.88 15 5 H -0.28 -6.68 7.11 56.52 0.40 -6.28 15 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 15 7 C -0.52 -14.50 9.11 -34.44 -0.31 -14.81 15 8 H 0.06 1.57 7.74 -52.49 -0.41 1.16 15 9 C 0.03 0.80 4.95 -27.88 -0.14 0.66 15 10 C -0.03 -0.71 5.78 -27.89 -0.16 -0.87 15 11 C 0.26 5.25 7.44 -153.18 -1.14 4.11 15 12 N -0.46 -9.44 11.22 -9.97 -0.11 -9.56 15 13 C 0.02 0.32 11.93 -17.42 -0.21 0.11 15 14 C -0.11 -1.81 7.83 -16.38 -0.13 -1.94 15 15 S 0.10 1.28 23.36 -107.50 -2.51 -1.23 15 16 C -0.23 -2.64 11.10 29.05 0.32 -2.32 15 17 C 0.07 1.00 11.26 -16.62 -0.19 0.81 15 18 N -0.41 -7.36 3.19 -59.70 -0.19 -7.55 15 19 H 0.26 7.36 8.31 -40.82 -0.34 7.02 15 20 H 0.03 0.75 8.14 -51.93 -0.42 0.32 15 21 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 15 22 H 0.07 1.29 8.14 -51.93 -0.42 0.86 15 23 H 0.09 1.84 8.14 -51.93 -0.42 1.41 15 24 H 0.18 2.43 8.06 -52.48 -0.42 2.01 15 25 H 0.19 1.45 8.06 -52.49 -0.42 1.03 15 26 H 0.18 2.20 8.06 -52.48 -0.42 1.78 15 LS Contribution 249.57 15.07 3.76 3.76 Total: -1.00 -32.02 249.57 -7.89 -39.91 By element: Atomic # 1 Polarization: -0.42 SS G_CDS: -2.50 Total: -2.92 kcal Atomic # 6 Polarization: -10.63 SS G_CDS: -2.05 Total: -12.68 kcal Atomic # 7 Polarization: -43.54 SS G_CDS: 0.43 Total: -43.11 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Atomic # 16 Polarization: 1.28 SS G_CDS: -2.51 Total: -1.23 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -32.02 -7.89 -39.91 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259670217.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.983 kcal (2) G-P(sol) polarization free energy of solvation -32.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.906 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds