Wall clock time and date at job start Mon Mar 30 2020 02:46:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31073 * 1 3 3 Si 1.86803 * 120.00494 * 2 1 4 4 H 1.48496 * 109.47225 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.46840 * 299.99823 * 3 2 1 6 6 H 1.48497 * 109.46982 * 59.99580 * 3 2 1 7 7 C 1.39623 * 119.99945 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00201 * 180.02562 * 7 2 1 9 9 C 1.41125 * 119.99830 * 0.02562 * 7 2 1 10 10 C 1.37912 * 122.81924 * 179.97438 * 9 7 2 11 11 S 1.70969 * 108.97524 * 179.76711 * 10 9 7 12 12 C 1.75894 * 90.85878 * 0.34078 * 11 10 9 13 13 C 1.47674 * 125.03324 * 179.91592 * 12 11 10 14 14 C 1.42582 * 128.21997 * 179.69911 * 13 12 11 15 15 N 1.29934 * 106.22641 * 180.02562 * 14 13 12 16 16 O 1.20823 * 112.08585 * 359.97438 * 15 14 13 17 17 C 1.33867 * 111.94448 * 0.02562 * 16 15 14 18 18 N 1.29879 * 109.93322 * 359.65188 * 12 11 10 19 19 H 0.97003 * 119.99172 * 359.97438 * 1 2 3 20 20 H 1.08001 * 125.50861 * 0.07454 * 10 9 7 21 21 H 1.07999 * 126.88585 * 0.02562 * 14 13 12 22 22 H 1.08004 * 126.90850 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3107 0.0000 0.0000 3 14 2.2449 1.6177 0.0000 4 1 3.7048 1.3462 0.0006 5 1 1.8862 2.3963 -1.2125 6 1 1.8861 2.3964 1.2124 7 6 2.0088 -1.2092 0.0005 8 1 3.0888 -1.2092 0.0010 9 6 1.3032 -2.4313 0.0005 10 6 1.9331 -3.6582 0.0005 11 16 0.7488 -4.8912 0.0071 12 6 -0.5379 -3.6919 -0.0009 13 6 -1.9825 -3.9985 -0.0018 14 6 -3.0779 -3.0858 -0.0023 15 7 -4.1555 -3.8119 -0.0025 16 8 -3.9066 -4.9942 -0.0028 17 6 -2.5885 -5.2280 -0.0022 18 7 -0.0293 -2.4969 -0.0003 19 1 -0.4849 0.8401 0.0004 20 1 3.0017 -3.8146 0.0017 21 1 -3.0230 -2.0072 -0.0024 22 1 -2.1006 -6.1915 -0.0027 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259696146.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:47 Heat of formation + Delta-G solvation = 99.114489 kcal Electronic energy + Delta-G solvation = -12205.867757 eV Core-core repulsion = 9856.191684 eV Total energy + Delta-G solvation = -2349.676073 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 222.020 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -44.53436 -37.86288 -34.01340 -33.00255 -31.56910 -29.06188 -25.76404 -24.56715 -22.31822 -21.08811 -19.21355 -17.50396 -17.38662 -17.19683 -15.52761 -15.24648 -14.49313 -13.60181 -13.02072 -12.96114 -12.70894 -12.00953 -11.66345 -11.32749 -10.97225 -10.82146 -10.49033 -10.17734 -9.82886 -9.61795 -9.18762 -8.25033 -8.04378 -7.35099 -6.63714 -4.47298 1.38547 2.15129 2.60388 2.86871 3.05921 3.10850 3.13978 3.44634 3.58466 3.93600 4.26122 4.59189 5.14402 5.35860 5.39701 5.59309 5.94519 6.42356 6.64115 6.96893 7.13209 7.33849 8.08671 8.41820 8.57947 8.77183 9.41968 10.24246 Molecular weight = 222.02amu Principal moments of inertia in cm(-1) A = 0.035575 B = 0.009322 C = 0.007406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.870986 B = 3002.794992 C = 3779.822255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.751 5.751 2 C 0.071 3.929 3 Si 0.913 3.087 4 H -0.261 1.261 5 H -0.273 1.273 6 H -0.273 1.273 7 C -0.429 4.429 8 H 0.087 0.913 9 C 0.226 3.774 10 C -0.449 4.449 11 S -0.005 6.005 12 C 0.101 3.899 13 C -0.102 4.102 14 C 0.034 3.966 15 N -0.377 5.377 16 O 0.093 5.907 17 C -0.060 4.060 18 N -0.380 5.380 19 H 0.274 0.726 20 H 0.142 0.858 21 H 0.199 0.801 22 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.813 -5.282 0.000 5.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.374 5.374 2 C -0.152 4.152 3 Si 0.738 3.262 4 H -0.184 1.184 5 H -0.198 1.198 6 H -0.198 1.198 7 C -0.463 4.463 8 H 0.105 0.895 9 C 0.103 3.897 10 C -0.588 4.588 11 S 0.245 5.755 12 C -0.178 4.178 13 C -0.110 4.110 14 C -0.148 4.148 15 N -0.083 5.083 16 O 0.031 5.969 17 C -0.145 4.145 18 N -0.096 5.096 19 H 0.085 0.915 20 H 0.160 0.840 21 H 0.216 0.784 22 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -4.551 -5.430 0.009 7.085 hybrid contribution 2.023 1.685 -0.004 2.633 sum -2.528 -3.746 0.005 4.519 Atomic orbital electron populations 1.70117 1.07044 1.28101 1.32165 1.25992 0.95021 1.01216 0.92954 0.86169 0.80694 0.80826 0.78529 1.18427 1.19841 1.19846 1.18993 0.94242 0.88185 1.44884 0.89497 1.17994 0.85112 0.93239 0.93373 1.25283 1.01233 0.93721 1.38608 1.82412 1.00957 1.15240 1.76927 1.24549 0.93395 0.91658 1.08210 1.19209 0.91905 0.92302 1.07554 1.25245 0.86224 1.02850 1.00444 1.73652 1.24892 0.89498 1.20235 1.84687 1.23973 1.20548 1.67644 1.25995 0.83219 1.00405 1.04882 1.67734 1.12381 1.18476 1.10994 0.91482 0.83999 0.78375 0.76540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -19.73 11.69 55.53 0.65 -19.08 14 2 C 0.07 1.80 5.49 -17.36 -0.10 1.70 14 3 Si 0.91 18.72 29.56 -169.99 -5.02 13.69 14 4 H -0.26 -5.24 7.11 56.52 0.40 -4.84 14 5 H -0.27 -5.51 7.11 56.52 0.40 -5.11 14 6 H -0.27 -5.51 7.11 56.52 0.40 -5.11 14 7 C -0.43 -11.53 9.23 -37.97 -0.35 -11.88 14 8 H 0.09 2.21 7.84 -52.49 -0.41 1.80 14 9 C 0.23 6.15 6.47 -86.20 -0.56 5.59 14 10 C -0.45 -11.07 10.98 30.61 0.34 -10.73 14 11 S 0.00 -0.10 23.01 -107.50 -2.47 -2.58 14 12 C 0.10 2.32 7.45 -14.53 -0.11 2.21 14 13 C -0.10 -1.96 6.30 -104.79 -0.66 -2.62 14 14 C 0.03 0.64 12.21 -16.68 -0.20 0.43 14 15 N -0.38 -6.64 12.02 30.69 0.37 -6.27 14 16 O 0.09 1.46 11.16 17.65 0.20 1.65 14 17 C -0.06 -0.90 12.20 30.31 0.37 -0.53 14 18 N -0.38 -10.10 8.49 -9.09 -0.08 -10.17 14 19 H 0.27 6.53 8.30 -40.82 -0.34 6.19 14 20 H 0.14 3.31 8.06 -52.49 -0.42 2.89 14 21 H 0.20 3.75 8.06 -52.49 -0.42 3.33 14 22 H 0.22 2.37 8.06 -52.48 -0.42 1.95 14 LS Contribution 227.89 15.07 3.43 3.43 Total: -1.00 -29.05 227.89 -5.01 -34.05 By element: Atomic # 1 Polarization: 1.90 SS G_CDS: -0.81 Total: 1.09 kcal Atomic # 6 Polarization: -14.56 SS G_CDS: -1.27 Total: -15.83 kcal Atomic # 7 Polarization: -36.47 SS G_CDS: 0.94 Total: -35.53 kcal Atomic # 8 Polarization: 1.46 SS G_CDS: 0.20 Total: 1.65 kcal Atomic # 14 Polarization: 18.72 SS G_CDS: -5.02 Total: 13.69 kcal Atomic # 16 Polarization: -0.10 SS G_CDS: -2.47 Total: -2.58 kcal Total LS contribution 3.43 Total: 3.43 kcal Total: -29.05 -5.01 -34.05 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259696146.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.169 kcal (2) G-P(sol) polarization free energy of solvation -29.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.055 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds