Wall clock time and date at job start Mon Mar 30 2020 03:01:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31525 * 1 3 3 Si 1.86798 * 120.00544 * 2 1 4 4 H 1.48490 * 109.47339 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47239 * 300.00536 * 3 2 1 6 6 H 1.48504 * 109.46636 * 60.00095 * 3 2 1 7 7 C 1.38685 * 119.99727 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00304 * 179.97438 * 7 2 1 9 9 O 1.34853 * 119.99844 * 359.72665 * 7 2 1 10 10 C 1.35544 * 116.99768 * 179.97438 * 9 7 2 11 11 N 1.30358 * 125.83046 * 359.68695 * 10 9 7 12 12 O 1.41647 * 107.97761 * 179.85729 * 11 10 9 13 13 N 1.41671 * 107.65983 * 0.41403 * 12 11 10 14 14 C 1.30882 * 107.79844 * 359.75606 * 13 12 11 15 15 C 1.47873 * 125.88999 * 179.97438 * 14 13 12 16 16 N 1.31455 * 125.83738 * 180.02562 * 15 14 13 17 17 C 1.33648 * 109.24894 * 179.97438 * 16 15 14 18 18 C 1.35011 * 108.37725 * 0.02562 * 17 16 15 19 19 N 1.36448 * 125.83283 * 359.76335 * 15 14 13 20 20 H 0.97003 * 126.49639 * 0.02562 * 19 15 14 21 21 H 0.97000 * 120.00019 * 359.97438 * 1 2 3 22 22 H 1.08005 * 125.81105 * 179.97438 * 17 16 15 23 23 H 1.07995 * 126.48597 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2494 1.6176 0.0000 4 1 3.7093 1.3462 -0.0006 5 1 1.8907 2.3964 -1.2124 6 1 1.8906 2.3963 1.2126 7 6 2.0086 -1.2011 -0.0005 8 1 3.0886 -1.2012 -0.0010 9 8 1.3343 -2.3689 0.0045 10 6 2.0725 -3.5057 0.0031 11 7 3.3744 -3.5701 -0.0084 12 8 3.7445 -4.9374 -0.0020 13 7 2.5538 -5.7049 0.0047 14 6 1.5424 -4.8743 0.0079 15 6 0.1121 -5.2499 0.0145 16 7 -0.9030 -4.4146 0.0172 17 6 -2.0449 -5.1090 0.0227 18 6 -1.7429 -6.4249 0.0240 19 7 -0.3795 -6.5227 0.0138 20 1 0.1400 -7.3418 0.0092 21 1 -0.4850 0.8400 0.0004 22 1 -3.0399 -4.6890 0.0263 23 1 -2.4455 -7.2450 0.0284 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259726782.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:00 Heat of formation + Delta-G solvation = 128.784685 kcal Electronic energy + Delta-G solvation = -14334.490610 eV Core-core repulsion = 11575.641013 eV Total energy + Delta-G solvation = -2758.849597 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 222.054 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.84731 -39.94269 -37.47855 -32.85160 -32.59024 -32.25332 -30.55013 -28.97194 -25.70607 -23.57723 -21.76413 -21.15531 -20.12370 -18.36488 -17.83533 -16.85215 -15.52190 -15.21049 -14.60858 -14.46222 -14.21441 -13.80632 -13.36564 -13.14304 -12.90582 -12.07816 -11.46140 -11.13908 -10.88935 -10.69943 -10.45630 -9.94840 -9.88439 -9.78076 -9.42218 -8.52462 -8.17210 -6.58506 -4.23472 0.95976 2.19708 2.86616 2.88919 3.08777 3.16055 3.18261 3.35250 3.60319 3.70468 4.13960 4.33081 4.93653 4.97427 5.12976 5.39043 5.55386 5.96441 6.18721 6.23920 6.78342 7.18627 7.27307 7.73563 8.02989 8.19502 8.82177 9.35344 10.55108 Molecular weight = 222.05amu Principal moments of inertia in cm(-1) A = 0.030537 B = 0.009443 C = 0.007231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.710859 B = 2964.348765 C = 3871.211584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.835 5.835 2 C 0.047 3.953 3 Si 0.950 3.050 4 H -0.262 1.262 5 H -0.273 1.273 6 H -0.273 1.273 7 C -0.391 4.391 8 H 0.103 0.897 9 O -0.113 6.113 10 C 0.252 3.748 11 N -0.381 5.381 12 O 0.007 5.993 13 N -0.299 5.299 14 C 0.177 3.823 15 C 0.248 3.752 16 N -0.408 5.408 17 C -0.021 4.021 18 C -0.037 4.037 19 N -0.552 5.552 20 H 0.423 0.577 21 H 0.275 0.725 22 H 0.178 0.822 23 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.146 -9.208 0.054 10.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.468 5.468 2 C -0.161 4.161 3 Si 0.774 3.226 4 H -0.186 1.186 5 H -0.198 1.198 6 H -0.198 1.198 7 C -0.470 4.470 8 H 0.121 0.879 9 O 0.000 6.000 10 C 0.039 3.961 11 N -0.174 5.174 12 O -0.122 6.122 13 N -0.045 5.045 14 C -0.008 4.008 15 C -0.012 4.012 16 N -0.129 5.129 17 C -0.174 4.174 18 C -0.174 4.174 19 N -0.156 5.156 20 H 0.262 0.738 21 H 0.085 0.915 22 H 0.196 0.804 23 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -3.338 -8.651 0.041 9.273 hybrid contribution -0.250 -0.239 0.008 0.346 sum -3.587 -8.891 0.049 9.587 Atomic orbital electron populations 1.70100 1.05954 1.28219 1.42571 1.25443 0.96019 0.99007 0.95663 0.85502 0.79500 0.79252 0.78392 1.18596 1.19837 1.19834 1.21629 0.92528 0.79491 1.53312 0.87924 1.84281 1.30068 1.09713 1.75970 1.23855 0.87453 0.88782 0.96060 1.80373 1.09513 0.91057 1.36505 1.93111 1.20064 1.11326 1.87656 1.79675 0.93294 1.17550 1.14027 1.21738 0.90150 0.89988 0.98940 1.19648 0.90622 0.80273 1.10640 1.70683 0.96957 1.31302 1.13950 1.22578 0.97927 0.89584 1.07272 1.22959 0.83468 1.00565 1.10385 1.43425 1.07494 1.08975 1.55742 0.73803 0.91544 0.80439 0.79844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -23.81 13.67 55.48 0.76 -23.05 14 2 C 0.05 1.28 5.49 -17.52 -0.10 1.18 14 3 Si 0.95 20.46 29.55 -169.99 -5.02 15.43 14 4 H -0.26 -5.54 7.11 56.52 0.40 -5.14 14 5 H -0.27 -5.69 7.11 56.52 0.40 -5.29 14 6 H -0.27 -5.69 7.11 56.52 0.40 -5.29 14 7 C -0.39 -11.16 9.73 30.90 0.30 -10.86 14 8 H 0.10 2.87 7.03 -52.49 -0.37 2.50 14 9 O -0.11 -3.26 9.64 0.62 0.01 -3.26 14 10 C 0.25 6.49 8.02 -14.73 -0.12 6.37 14 11 N -0.38 -9.70 11.84 31.81 0.38 -9.32 14 12 O 0.01 0.17 13.62 12.23 0.17 0.33 14 13 N -0.30 -6.20 12.99 34.44 0.45 -5.75 14 14 C 0.18 3.89 7.33 -80.88 -0.59 3.30 14 15 C 0.25 4.81 8.06 -154.65 -1.25 3.56 14 16 N -0.41 -8.54 11.08 -11.21 -0.12 -8.66 14 17 C -0.02 -0.33 11.84 -17.91 -0.21 -0.54 14 18 C -0.04 -0.43 12.03 -16.53 -0.20 -0.63 14 19 N -0.55 -7.60 6.21 -10.55 -0.07 -7.66 14 20 H 0.42 4.51 8.96 -40.82 -0.37 4.15 14 21 H 0.27 7.09 8.31 -40.82 -0.34 6.75 14 22 H 0.18 2.17 8.06 -52.48 -0.42 1.75 14 23 H 0.18 1.22 8.06 -52.49 -0.42 0.80 14 LS Contribution 232.86 15.07 3.51 3.51 Total: -1.00 -32.99 232.86 -2.83 -35.82 By element: Atomic # 1 Polarization: 0.94 SS G_CDS: -0.72 Total: 0.23 kcal Atomic # 6 Polarization: 4.55 SS G_CDS: -2.16 Total: 2.39 kcal Atomic # 7 Polarization: -55.84 SS G_CDS: 1.39 Total: -54.45 kcal Atomic # 8 Polarization: -3.10 SS G_CDS: 0.17 Total: -2.92 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 3.51 Total: 3.51 kcal Total: -32.99 -2.83 -35.82 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259726782.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.601 kcal (2) G-P(sol) polarization free energy of solvation -32.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 131.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.817 kcal (6) G-S(sol) free energy of system = (1) + (5) 128.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds