Wall clock time and date at job start Mon Mar 30 2020 02:54:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31327 * 1 3 3 Si 1.86806 * 119.99614 * 2 1 4 4 H 1.48500 * 109.47029 * 240.00185 * 3 2 1 5 5 H 1.48496 * 109.47343 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47167 * 120.00307 * 3 2 1 7 7 C 1.38981 * 120.00475 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99792 * 160.23762 * 7 2 1 9 9 N 1.37142 * 119.99714 * 340.24677 * 7 2 1 10 10 C 1.37499 * 119.73560 * 322.94405 * 9 7 2 11 11 N 1.34692 * 134.40539 * 0.03234 * 10 9 7 12 12 H 0.96998 * 125.81376 * 359.97438 * 11 10 9 13 13 N 1.40097 * 108.38851 * 179.97438 * 11 10 9 14 14 C 1.30574 * 109.22167 * 359.97438 * 13 11 10 15 15 C 1.39489 * 118.58118 * 180.02562 * 10 9 7 16 16 C 1.46898 * 118.23094 * 359.97438 * 15 10 9 17 17 O 1.22011 * 120.72817 * 180.02562 * 16 15 10 18 18 N 1.34390 * 118.54272 * 0.04407 * 16 15 10 19 19 C 1.31210 * 121.41102 * 359.97438 * 18 16 15 20 20 O 1.34864 * 118.64715 * 179.97438 * 19 18 16 21 21 H 0.96996 * 119.99758 * 359.97438 * 1 2 3 22 22 H 1.07996 * 125.93948 * 179.97438 * 14 13 11 23 23 H 0.96691 * 117.00026 * 275.15458 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3133 0.0000 0.0000 3 14 2.2472 1.6179 0.0000 4 1 3.1009 1.6966 -1.2125 5 1 1.2822 2.7465 0.0006 6 1 3.1010 1.6966 1.2124 7 6 2.0083 -1.2036 0.0005 8 1 3.0405 -1.2311 -0.3157 9 7 1.3831 -2.3561 0.4025 10 6 0.4819 -2.3169 1.4402 11 7 0.0087 -1.3430 2.2412 12 1 0.2604 -0.4069 2.2062 13 7 -0.9093 -1.9118 3.1337 14 6 -1.0033 -3.1922 2.8957 15 6 -0.1395 -3.5035 1.8296 16 6 0.2024 -4.7363 1.1076 17 8 -0.3142 -5.7995 1.4099 18 7 1.0970 -4.6675 0.1071 19 6 1.6606 -3.5313 -0.2293 20 8 2.5514 -3.5263 -1.2419 21 1 -0.4849 0.8400 0.0004 22 1 -1.6335 -3.8909 3.4259 23 1 3.4661 -3.7507 -1.0229 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259763935.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:07 Heat of formation + Delta-G solvation = 35.849173 kcal Electronic energy + Delta-G solvation = -15104.543111 eV Core-core repulsion = 12341.663528 eV Total energy + Delta-G solvation = -2762.879583 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 222.054 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.22997 -38.88358 -37.21009 -36.01776 -33.88516 -31.92123 -30.51122 -28.87089 -25.80122 -23.09635 -22.40847 -21.04176 -19.29588 -18.44787 -17.95606 -16.37367 -15.87864 -15.43445 -15.01433 -14.30177 -14.18507 -13.61919 -12.99597 -12.64899 -12.39895 -12.08985 -11.73539 -11.59648 -10.96548 -10.81659 -10.44822 -10.00536 -9.60560 -9.27332 -8.40140 -8.32053 -7.63638 -7.19381 -5.03313 1.68897 2.48227 2.70551 2.79029 2.81657 2.89144 3.09682 3.50407 3.90530 4.09907 4.52814 4.88074 5.27624 5.69057 5.79382 5.99451 6.20647 6.67234 6.87127 7.09253 7.34334 7.77773 7.96836 8.08917 8.29340 8.61238 8.89394 9.20397 9.75077 Molecular weight = 222.05amu Principal moments of inertia in cm(-1) A = 0.031400 B = 0.013774 C = 0.010020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.514926 B = 2032.255499 C = 2793.711929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.836 5.836 2 C 0.041 3.959 3 Si 0.936 3.064 4 H -0.260 1.260 5 H -0.274 1.274 6 H -0.262 1.262 7 C -0.376 4.376 8 H 0.122 0.878 9 N -0.323 5.323 10 C 0.387 3.613 11 N -0.438 5.438 12 H 0.437 0.563 13 N -0.300 5.300 14 C 0.121 3.879 15 C -0.374 4.374 16 C 0.565 3.435 17 O -0.548 6.548 18 N -0.623 5.623 19 C 0.581 3.419 20 O -0.462 6.462 21 H 0.291 0.709 22 H 0.188 0.812 23 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.089 3.816 1.572 6.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.469 5.469 2 C -0.171 4.171 3 Si 0.758 3.242 4 H -0.184 1.184 5 H -0.198 1.198 6 H -0.187 1.187 7 C -0.504 4.504 8 H 0.139 0.861 9 N -0.023 5.023 10 C 0.153 3.847 11 N -0.151 5.151 12 H 0.285 0.715 13 N -0.122 5.122 14 C -0.069 4.069 15 C -0.393 4.393 16 C 0.355 3.645 17 O -0.429 6.429 18 N -0.382 5.382 19 C 0.279 3.721 20 O -0.265 6.265 21 H 0.102 0.898 22 H 0.205 0.795 23 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges 3.883 3.801 1.792 5.722 hybrid contribution 0.945 1.520 -0.302 1.815 sum 4.828 5.321 1.489 7.338 Atomic orbital electron populations 1.69972 1.06416 1.30628 1.39836 1.25834 0.95615 1.01519 0.94125 0.85805 0.79476 0.78536 0.80339 1.18402 1.19848 1.18691 1.19954 0.97796 0.83088 1.49523 0.86093 1.40543 1.31896 1.08901 1.20944 1.18070 0.90984 0.89420 0.86232 1.45909 1.33924 1.09516 1.25761 0.71485 1.77138 1.10886 1.09758 1.14461 1.23287 0.96494 0.92440 0.94679 1.21650 1.12584 0.95458 1.09560 1.17791 0.79764 0.86716 0.80252 1.90676 1.53196 1.31446 1.67549 1.69073 1.22431 1.21999 1.24702 1.20127 0.88925 0.81436 0.81612 1.84138 1.21896 1.90865 1.29644 0.89822 0.79534 0.72932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -19.15 10.84 55.50 0.60 -18.55 14 2 C 0.04 0.85 4.18 -17.49 -0.07 0.78 14 3 Si 0.94 15.87 29.60 -169.99 -5.03 10.84 14 4 H -0.26 -4.40 7.11 56.52 0.40 -4.00 14 5 H -0.27 -4.69 7.11 56.52 0.40 -4.29 14 6 H -0.26 -4.34 7.11 56.52 0.40 -3.94 14 7 C -0.38 -8.10 8.85 -14.90 -0.13 -8.23 14 8 H 0.12 2.34 7.69 -52.49 -0.40 1.93 14 9 N -0.32 -7.37 2.76 -62.87 -0.17 -7.55 14 10 C 0.39 9.08 6.69 -154.33 -1.03 8.04 14 11 N -0.44 -9.54 6.30 31.31 0.20 -9.34 14 12 H 0.44 9.01 6.91 -182.60 -1.26 7.75 14 13 N -0.30 -6.32 12.62 30.76 0.39 -5.93 14 14 C 0.12 2.52 12.06 -17.16 -0.21 2.32 14 15 C -0.37 -8.92 6.37 -105.00 -0.67 -9.59 14 16 C 0.56 14.53 7.95 -12.93 -0.10 14.43 14 17 O -0.55 -15.12 18.01 4.91 0.09 -15.03 14 18 N -0.62 -15.21 10.46 -14.59 -0.15 -15.36 14 19 C 0.58 12.82 8.47 -88.64 -0.75 12.07 14 20 O -0.46 -8.27 12.45 -16.32 -0.20 -8.47 14 21 H 0.29 6.20 8.31 -40.82 -0.34 5.86 14 22 H 0.19 3.23 8.06 -52.49 -0.42 2.81 14 23 H 0.41 4.65 9.15 45.56 0.42 5.06 14 LS Contribution 219.05 15.07 3.30 3.30 Total: -1.00 -30.32 219.05 -4.75 -35.08 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: -0.80 Total: 11.19 kcal Atomic # 6 Polarization: 22.79 SS G_CDS: -2.97 Total: 19.82 kcal Atomic # 7 Polarization: -57.59 SS G_CDS: 0.86 Total: -56.73 kcal Atomic # 8 Polarization: -23.39 SS G_CDS: -0.11 Total: -23.50 kcal Atomic # 14 Polarization: 15.87 SS G_CDS: -5.03 Total: 10.84 kcal Total LS contribution 3.30 Total: 3.30 kcal Total: -30.32 -4.75 -35.08 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259763935.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.927 kcal (2) G-P(sol) polarization free energy of solvation -30.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.078 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds