Wall clock time and date at job start Mon Mar 30 2020 03:01:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86803 * 120.00166 * 2 1 4 4 H 1.48504 * 109.47260 * 270.00546 * 3 2 1 5 5 H 1.48500 * 109.46901 * 30.00263 * 3 2 1 6 6 H 1.48497 * 109.47490 * 150.00073 * 3 2 1 7 7 C 1.37878 * 120.00080 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99893 * 179.97438 * 7 2 1 9 9 C 1.50695 * 119.99715 * 359.97438 * 7 2 1 10 10 H 1.09001 * 109.21621 * 60.38877 * 9 7 2 11 11 C 1.53000 * 109.34267 * 179.97438 * 9 7 2 12 12 C 1.51422 * 109.36363 * 173.08298 * 11 9 7 13 13 S 1.70265 * 126.21333 * 159.22018 * 12 11 9 14 14 C 1.75421 * 92.72206 * 180.09554 * 13 12 11 15 15 C 1.32536 * 110.77383 * 359.97438 * 14 13 12 16 16 C 1.38073 * 123.32728 * 339.31663 * 12 11 9 17 17 C 1.48153 * 120.85801 * 359.86587 * 16 12 11 18 18 O 1.21360 * 122.23473 * 168.30316 * 17 16 12 19 19 C 1.51780 * 115.53544 * 348.28301 * 17 16 12 20 20 H 0.97010 * 119.99937 * 359.97438 * 1 2 3 21 21 H 1.09002 * 109.49453 * 293.06077 * 11 9 7 22 22 H 1.08996 * 109.49064 * 53.11527 * 11 9 7 23 23 H 1.07997 * 124.61402 * 180.02562 * 14 13 12 24 24 H 1.08001 * 123.32213 * 179.97438 * 15 14 13 25 25 H 1.08995 * 109.69338 * 283.48604 * 19 17 16 26 26 H 1.09002 * 109.69175 * 162.89638 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 1 0.6308 -2.5553 -0.8952 11 6 2.2478 -3.6598 -0.0018 12 6 1.4991 -4.9647 0.1702 13 16 2.0670 -6.5134 -0.2517 14 6 0.5920 -7.2934 0.2897 15 6 -0.2664 -6.4002 0.7609 16 6 0.2287 -5.0456 0.7050 17 6 -0.4862 -3.8278 1.1529 18 8 -1.6676 -3.8359 1.4304 19 6 0.3577 -2.5693 1.2423 20 1 -0.4850 0.8401 0.0004 21 1 2.7894 -3.6731 -0.9477 22 1 2.9532 -3.5343 0.8195 23 1 0.4086 -8.3568 0.2458 24 1 -1.2407 -6.6602 1.1476 25 1 0.9772 -2.6054 2.1383 26 1 -0.2909 -1.6940 1.2783 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259812096.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:26 Heat of formation + Delta-G solvation = -21.919635 kcal Electronic energy + Delta-G solvation = -12721.847443 eV Core-core repulsion = 10470.463279 eV Total energy + Delta-G solvation = -2251.384163 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 222.046 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.01717 -36.41832 -34.96177 -32.10993 -28.77379 -27.90661 -25.05042 -23.05675 -20.93027 -20.25194 -17.43685 -16.89748 -16.06773 -15.40845 -14.68407 -14.02084 -13.77525 -13.48951 -13.21796 -12.78652 -12.58193 -12.11502 -11.61503 -11.19372 -11.04736 -10.82191 -10.72177 -10.35987 -10.06785 -9.63577 -9.41216 -8.62422 -8.45269 -8.32251 -8.04698 -6.11424 -4.21954 1.13928 1.82999 2.24242 2.28223 3.25082 3.32833 3.34626 3.66765 4.33367 4.89039 5.17146 5.26286 5.49308 5.64416 6.01393 6.10727 6.18032 6.32105 6.41918 6.63367 6.70431 6.75661 6.98612 7.52006 7.70862 7.90361 8.20471 8.42031 8.81524 9.44853 10.93605 Molecular weight = 222.05amu Principal moments of inertia in cm(-1) A = 0.043833 B = 0.008711 C = 0.007426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.641598 B = 3213.648988 C = 3769.503035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.063 3.937 3 Si 0.897 3.103 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.521 4.521 8 H 0.062 0.938 9 C 0.061 3.939 10 H 0.034 0.966 11 C -0.050 4.050 12 C -0.135 4.135 13 S 0.151 5.849 14 C -0.257 4.257 15 C -0.083 4.083 16 C -0.211 4.211 17 C 0.419 3.581 18 O -0.478 6.478 19 C -0.154 4.154 20 H 0.265 0.735 21 H 0.074 0.926 22 H 0.082 0.918 23 H 0.161 0.839 24 H 0.143 0.857 25 H 0.074 0.926 26 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.202 -10.490 0.333 11.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.139 4.139 3 Si 0.724 3.276 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.559 4.559 8 H 0.080 0.920 9 C 0.041 3.959 10 H 0.052 0.948 11 C -0.089 4.089 12 C -0.255 4.255 13 S 0.418 5.582 14 C -0.391 4.391 15 C -0.112 4.112 16 C -0.225 4.225 17 C 0.297 3.703 18 O -0.356 6.356 19 C -0.192 4.192 20 H 0.075 0.925 21 H 0.092 0.908 22 H 0.100 0.900 23 H 0.179 0.821 24 H 0.161 0.839 25 H 0.093 0.907 26 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 4.758 -10.955 -0.157 11.944 hybrid contribution -0.917 1.253 0.584 1.659 sum 3.841 -9.702 0.427 10.443 Atomic orbital electron populations 1.69839 1.05978 1.27048 1.49365 1.25012 0.94882 0.99401 0.94628 0.86518 0.79788 0.83077 0.78199 1.20582 1.21125 1.19775 1.21075 0.93066 0.89818 1.51928 0.91966 1.18644 0.91964 0.91497 0.93767 0.94805 1.20718 0.98260 0.88100 1.01834 1.25942 0.98121 1.01117 1.00323 1.82664 1.18016 0.96478 1.61091 1.25175 0.98866 1.03278 1.11802 1.21037 1.00050 0.90918 0.99189 1.21898 0.95767 0.95491 1.09343 1.23281 0.87596 0.89083 0.70301 1.90434 1.17600 1.87451 1.40077 1.22507 1.00189 0.95774 1.00705 0.92497 0.90791 0.89969 0.82124 0.83922 0.90739 0.85733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.58 11.24 55.43 0.62 -23.96 15 2 C 0.06 1.67 5.29 -17.82 -0.09 1.57 15 3 Si 0.90 20.30 29.54 -169.99 -5.02 15.28 15 4 H -0.28 -6.32 7.11 56.52 0.40 -5.92 15 5 H -0.29 -6.50 7.11 56.52 0.40 -6.10 15 6 H -0.27 -6.05 7.11 56.52 0.40 -5.65 15 7 C -0.52 -13.30 8.56 -34.44 -0.29 -13.59 15 8 H 0.06 1.53 7.74 -52.49 -0.41 1.12 15 9 C 0.06 1.45 2.04 -91.66 -0.19 1.26 15 10 H 0.03 0.89 8.14 -51.93 -0.42 0.47 15 11 C -0.05 -0.96 5.44 -27.53 -0.15 -1.11 15 12 C -0.14 -2.44 6.28 -34.01 -0.21 -2.65 15 13 S 0.15 2.12 22.98 -107.50 -2.47 -0.35 15 14 C -0.26 -3.56 11.09 28.82 0.32 -3.24 15 15 C -0.08 -1.38 10.37 -39.10 -0.41 -1.78 15 16 C -0.21 -4.14 6.05 -103.49 -0.63 -4.77 15 17 C 0.42 9.52 7.08 -29.71 -0.21 9.31 15 18 O -0.48 -11.84 17.90 5.49 0.10 -11.74 15 19 C -0.15 -3.63 5.22 -27.24 -0.14 -3.77 15 20 H 0.26 7.05 8.31 -40.82 -0.34 6.71 15 21 H 0.07 1.32 8.14 -51.93 -0.42 0.90 15 22 H 0.08 1.49 8.13 -51.93 -0.42 1.07 15 23 H 0.16 1.70 8.06 -52.49 -0.42 1.28 15 24 H 0.14 2.20 8.06 -52.49 -0.42 1.78 15 25 H 0.07 1.65 8.14 -51.93 -0.42 1.22 15 26 H 0.12 3.34 5.90 -51.93 -0.31 3.03 15 LS Contribution 241.01 15.07 3.63 3.63 Total: -1.00 -28.46 241.01 -7.52 -35.99 By element: Atomic # 1 Polarization: 2.30 SS G_CDS: -2.38 Total: -0.08 kcal Atomic # 6 Polarization: -16.77 SS G_CDS: -2.00 Total: -18.77 kcal Atomic # 7 Polarization: -24.58 SS G_CDS: 0.62 Total: -23.96 kcal Atomic # 8 Polarization: -11.84 SS G_CDS: 0.10 Total: -11.74 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.28 kcal Atomic # 16 Polarization: 2.12 SS G_CDS: -2.47 Total: -0.35 kcal Total LS contribution 3.63 Total: 3.63 kcal Total: -28.46 -7.52 -35.99 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259812096.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.066 kcal (2) G-P(sol) polarization free energy of solvation -28.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds