Wall clock time and date at job start Mon Mar 30 2020 03:01:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86803 * 120.00166 * 2 1 4 4 H 1.48504 * 109.47260 * 270.00546 * 3 2 1 5 5 H 1.48500 * 109.46901 * 30.00263 * 3 2 1 6 6 H 1.48497 * 109.47490 * 150.00073 * 3 2 1 7 7 C 1.37878 * 120.00080 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99893 * 179.97438 * 7 2 1 9 9 C 1.50695 * 119.99715 * 359.97438 * 7 2 1 10 10 H 1.09001 * 109.21621 * 60.38877 * 9 7 2 11 11 C 1.53000 * 109.34267 * 179.97438 * 9 7 2 12 12 C 1.51422 * 109.36363 * 173.08298 * 11 9 7 13 13 S 1.70265 * 126.21333 * 159.22018 * 12 11 9 14 14 C 1.75421 * 92.72206 * 180.09554 * 13 12 11 15 15 C 1.32536 * 110.77383 * 359.97438 * 14 13 12 16 16 C 1.38073 * 123.32728 * 339.31663 * 12 11 9 17 17 C 1.48153 * 120.85801 * 359.86587 * 16 12 11 18 18 O 1.21360 * 122.23473 * 168.30316 * 17 16 12 19 19 C 1.51780 * 115.53544 * 348.28301 * 17 16 12 20 20 H 0.97010 * 119.99937 * 359.97438 * 1 2 3 21 21 H 1.09002 * 109.49453 * 293.06077 * 11 9 7 22 22 H 1.08996 * 109.49064 * 53.11527 * 11 9 7 23 23 H 1.07997 * 124.61402 * 180.02562 * 14 13 12 24 24 H 1.08001 * 123.32213 * 179.97438 * 15 14 13 25 25 H 1.08995 * 109.69338 * 283.48604 * 19 17 16 26 26 H 1.09002 * 109.69175 * 162.89638 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 1 0.6308 -2.5553 -0.8952 11 6 2.2478 -3.6598 -0.0018 12 6 1.4991 -4.9647 0.1702 13 16 2.0670 -6.5134 -0.2517 14 6 0.5920 -7.2934 0.2897 15 6 -0.2664 -6.4002 0.7609 16 6 0.2287 -5.0456 0.7050 17 6 -0.4862 -3.8278 1.1529 18 8 -1.6676 -3.8359 1.4304 19 6 0.3577 -2.5693 1.2423 20 1 -0.4850 0.8401 0.0004 21 1 2.7894 -3.6731 -0.9477 22 1 2.9532 -3.5343 0.8195 23 1 0.4086 -8.3568 0.2458 24 1 -1.2407 -6.6602 1.1476 25 1 0.9772 -2.6054 2.1383 26 1 -0.2909 -1.6940 1.2783 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259812096.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:26 Heat of formation + Delta-G solvation = -38.215649 kcal Electronic energy + Delta-G solvation = -12722.554091 eV Core-core repulsion = 10470.463279 eV Total energy + Delta-G solvation = -2252.090812 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 222.046 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.68359 -38.03945 -36.61568 -33.94975 -30.40008 -29.59819 -26.86270 -24.54173 -22.63091 -21.76345 -19.05334 -18.61629 -17.66423 -16.95895 -16.51877 -15.71632 -15.52777 -15.01142 -14.70960 -14.45348 -14.23576 -13.66214 -13.08981 -12.89447 -12.78267 -12.48895 -12.29750 -12.03715 -11.86890 -11.46944 -11.23048 -10.56757 -10.27878 -9.62591 -9.31127 -8.12092 -6.29877 -0.27193 0.61229 0.83693 1.03200 1.45319 1.46623 1.56644 2.08111 2.43226 3.14266 3.39888 3.81830 4.16085 4.34739 4.45783 4.47901 4.65920 4.84200 4.94017 4.95666 5.15821 5.23886 5.37625 5.55493 5.74635 5.94039 6.22478 6.66002 6.82444 7.41159 8.92153 Molecular weight = 222.05amu Principal moments of inertia in cm(-1) A = 0.043833 B = 0.008711 C = 0.007426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.641598 B = 3213.648988 C = 3769.503035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.010 3.990 3 Si 0.962 3.038 4 H -0.276 1.276 5 H -0.290 1.290 6 H -0.260 1.260 7 C -0.530 4.530 8 H 0.073 0.927 9 C 0.060 3.940 10 H -0.005 1.005 11 C -0.043 4.043 12 C -0.159 4.159 13 S 0.247 5.753 14 C -0.236 4.236 15 C -0.108 4.108 16 C -0.240 4.240 17 C 0.415 3.585 18 O -0.514 6.514 19 C -0.151 4.151 20 H 0.262 0.738 21 H 0.089 0.911 22 H 0.095 0.905 23 H 0.204 0.796 24 H 0.147 0.853 25 H 0.084 0.916 26 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.538 -12.670 -0.135 14.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.188 4.188 3 Si 0.787 3.213 4 H -0.202 1.202 5 H -0.216 1.216 6 H -0.184 1.184 7 C -0.568 4.568 8 H 0.092 0.908 9 C 0.040 3.960 10 H 0.013 0.987 11 C -0.082 4.082 12 C -0.279 4.279 13 S 0.514 5.486 14 C -0.370 4.370 15 C -0.136 4.136 16 C -0.255 4.255 17 C 0.296 3.704 18 O -0.395 6.395 19 C -0.190 4.190 20 H 0.071 0.929 21 H 0.107 0.893 22 H 0.113 0.887 23 H 0.221 0.779 24 H 0.164 0.836 25 H 0.102 0.898 26 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 7.131 -13.147 -0.631 14.969 hybrid contribution -1.582 1.827 0.684 2.512 sum 5.549 -11.320 0.052 12.607 Atomic orbital electron populations 1.70023 1.07680 1.27519 1.50825 1.25857 0.95514 1.02991 0.94482 0.85495 0.78811 0.78790 0.78209 1.20201 1.21601 1.18354 1.21510 0.93732 0.90724 1.50867 0.90846 1.18547 0.92336 0.93264 0.91817 0.98688 1.20508 0.97211 0.87238 1.03195 1.25946 0.97847 1.03406 1.00657 1.82362 1.16216 0.91991 1.58071 1.25713 0.97876 1.04918 1.08518 1.21031 1.01278 0.89885 1.01402 1.21698 0.96623 0.95474 1.11684 1.23376 0.87113 0.90364 0.69574 1.90396 1.18787 1.88139 1.42141 1.22343 0.99959 0.95353 1.01312 0.92892 0.89290 0.88658 0.77926 0.83576 0.89805 0.89564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.50 11.24 21.45 0.24 -53.26 15 2 C 0.01 0.56 5.29 84.66 0.45 1.01 15 3 Si 0.96 42.04 29.54 68.60 2.03 44.07 15 4 H -0.28 -11.84 7.11 99.48 0.71 -11.13 15 5 H -0.29 -12.78 7.11 99.48 0.71 -12.08 15 6 H -0.26 -10.69 7.11 99.48 0.71 -9.98 15 7 C -0.53 -27.34 8.56 25.60 0.22 -27.12 15 8 H 0.07 3.53 7.74 -2.91 -0.02 3.51 15 9 C 0.06 2.93 2.04 -11.47 -0.02 2.90 15 10 H -0.01 -0.28 8.14 -2.39 -0.02 -0.30 15 11 C -0.04 -1.59 5.44 30.08 0.16 -1.43 15 12 C -0.16 -5.40 6.28 25.88 0.16 -5.24 15 13 S 0.25 5.78 22.98 -56.49 -1.30 4.49 15 14 C -0.24 -5.46 11.09 66.67 0.74 -4.72 15 15 C -0.11 -3.38 10.37 22.68 0.24 -3.14 15 16 C -0.24 -9.31 6.05 -19.13 -0.12 -9.43 15 17 C 0.41 19.66 7.08 28.67 0.20 19.86 15 18 O -0.51 -26.86 17.90 -3.28 -0.06 -26.92 15 19 C -0.15 -7.50 5.22 30.26 0.16 -7.34 15 20 H 0.26 14.59 8.31 -92.70 -0.77 13.82 15 21 H 0.09 2.99 8.14 -2.39 -0.02 2.97 15 22 H 0.10 3.27 8.13 -2.39 -0.02 3.25 15 23 H 0.20 2.99 8.06 -2.91 -0.02 2.97 15 24 H 0.15 4.35 8.06 -2.91 -0.02 4.33 15 25 H 0.08 3.86 8.14 -2.39 -0.02 3.84 15 26 H 0.09 4.94 5.90 -2.39 -0.01 4.93 15 Total: -1.00 -64.44 241.01 4.29 -60.15 By element: Atomic # 1 Polarization: 4.94 SS G_CDS: 1.19 Total: 6.12 kcal Atomic # 6 Polarization: -36.84 SS G_CDS: 2.19 Total: -34.65 kcal Atomic # 7 Polarization: -53.50 SS G_CDS: 0.24 Total: -53.26 kcal Atomic # 8 Polarization: -26.86 SS G_CDS: -0.06 Total: -26.92 kcal Atomic # 14 Polarization: 42.04 SS G_CDS: 2.03 Total: 44.07 kcal Atomic # 16 Polarization: 5.78 SS G_CDS: -1.30 Total: 4.49 kcal Total: -64.44 4.29 -60.15 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259812096.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.932 kcal (2) G-P(sol) polarization free energy of solvation -64.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds