Wall clock time and date at job start Mon Mar 30 2020 03:02:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86795 * 119.99801 * 2 1 4 4 H 1.48504 * 109.47279 * 269.99389 * 3 2 1 5 5 H 1.48496 * 109.47606 * 29.99947 * 3 2 1 6 6 H 1.48503 * 109.47036 * 150.00036 * 3 2 1 7 7 C 1.37872 * 119.99871 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00237 * 0.02562 * 7 2 1 9 9 C 1.50701 * 120.00113 * 180.02562 * 7 2 1 10 10 H 1.09003 * 109.29934 * 60.26181 * 9 7 2 11 11 C 1.53036 * 109.38654 * 180.02562 * 9 7 2 12 12 S 1.81667 * 109.07712 * 183.85454 * 11 9 7 13 13 O 1.42101 * 108.66298 * 59.98171 * 12 11 9 14 14 O 1.42103 * 108.66467 * 191.32186 * 12 11 9 15 15 C 1.81668 * 101.30838 * 305.65187 * 12 11 9 16 16 C 1.53037 * 109.00132 * 54.29937 * 15 12 11 17 17 C 1.52597 * 109.98500 * 296.35726 * 16 15 12 18 18 H 1.08997 * 109.23966 * 190.24520 * 17 16 15 19 19 F 1.39908 * 109.23797 * 309.68177 * 17 16 15 20 20 H 0.97004 * 119.99826 * 0.02562 * 1 2 3 21 21 H 1.09002 * 109.55147 * 63.94863 * 11 9 7 22 22 H 1.09003 * 109.54767 * 303.75678 * 11 9 7 23 23 H 1.09000 * 109.55007 * 174.15498 * 15 12 11 24 24 H 1.09008 * 109.55103 * 294.34978 * 15 12 11 25 25 H 1.08995 * 109.38231 * 56.50890 * 16 15 12 26 26 H 1.08993 * 109.38897 * 176.19949 * 16 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 1 3.8715 -0.6836 0.8944 11 6 4.0195 -2.6377 0.0010 12 16 5.8324 -2.6293 0.1171 13 8 6.2077 -1.9801 1.3242 14 8 6.3111 -3.9410 -0.1468 15 6 6.2740 -1.5570 -1.2813 16 6 5.5273 -0.2280 -1.1453 17 6 4.0225 -0.4633 -1.2394 18 1 3.5135 0.4968 -1.3246 19 9 3.7464 -1.2337 -2.3742 20 1 -0.4850 0.8401 -0.0004 21 1 3.7154 -3.1313 -0.9220 22 1 3.6018 -3.1714 0.8547 23 1 7.3485 -1.3739 -1.2754 24 1 5.9916 -2.0416 -2.2160 25 1 5.7634 0.2225 -0.1814 26 1 5.8388 0.4453 -1.9438 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259878022.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:52 Heat of formation + Delta-G solvation = -120.857675 kcal Electronic energy + Delta-G solvation = -14301.170876 eV Core-core repulsion = 11614.727212 eV Total energy + Delta-G solvation = -2686.443664 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 222.051 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -47.04485 -36.86739 -35.87945 -35.68489 -32.99115 -31.30725 -27.40154 -25.56463 -22.13847 -20.22385 -18.46717 -17.33333 -16.62946 -16.05469 -15.61030 -15.42457 -15.05186 -14.32746 -14.12300 -13.21347 -12.94592 -12.77851 -12.39931 -11.87162 -11.75041 -11.67462 -11.65005 -11.36158 -11.27038 -10.65235 -10.36293 -10.28354 -9.93731 -9.52465 -9.18667 -8.78303 -6.31365 -4.33769 0.40154 3.00440 3.01625 3.12156 3.18685 3.94021 4.13703 4.23895 4.65534 4.79703 4.91051 5.10808 5.25742 5.39234 5.47109 5.56117 5.71665 5.91553 5.98040 6.25610 6.52133 6.87051 7.33079 8.23446 8.72745 9.25406 10.81204 Molecular weight = 222.05amu Principal moments of inertia in cm(-1) A = 0.042236 B = 0.012311 C = 0.011737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.780257 B = 2273.864323 C = 2384.980530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.074 3.926 3 Si 0.859 3.141 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.255 1.255 7 C -0.512 4.512 8 H 0.085 0.915 9 C 0.002 3.998 10 H 0.066 0.934 11 C -0.562 4.562 12 S 2.398 3.602 13 O -0.945 6.945 14 O -0.957 6.957 15 C -0.602 4.602 16 C -0.142 4.142 17 C 0.065 3.935 18 H 0.084 0.916 19 F -0.205 7.205 20 H 0.269 0.731 21 H 0.134 0.866 22 H 0.136 0.864 23 H 0.129 0.871 24 H 0.137 0.863 25 H 0.097 0.903 26 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.237 0.086 -2.528 10.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.129 4.129 3 Si 0.688 3.312 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.180 1.180 7 C -0.550 4.550 8 H 0.103 0.897 9 C -0.018 4.018 10 H 0.084 0.916 11 C -0.694 4.694 12 S 2.583 3.417 13 O -0.942 6.942 14 O -0.954 6.954 15 C -0.731 4.731 16 C -0.181 4.181 17 C 0.028 3.972 18 H 0.101 0.899 19 F -0.186 7.186 20 H 0.079 0.921 21 H 0.152 0.848 22 H 0.154 0.846 23 H 0.147 0.853 24 H 0.155 0.845 25 H 0.115 0.885 26 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 10.660 -0.270 -1.935 10.837 hybrid contribution -0.176 1.313 -0.831 1.564 sum 10.484 1.043 -2.766 10.893 Atomic orbital electron populations 1.69846 1.06112 1.27373 1.48842 1.25022 0.94869 0.98834 0.94208 0.87251 0.81081 0.84445 0.78463 1.19792 1.20947 1.17959 1.20755 0.86796 0.95271 1.52212 0.89723 1.19568 1.00298 0.88285 0.93678 0.91589 1.29980 1.20021 1.07333 1.12028 1.08465 0.80303 0.75795 0.77137 1.93549 1.82154 1.76754 1.41772 1.93541 1.79795 1.36078 1.86028 1.30109 1.09687 1.11929 1.21361 1.22000 0.95079 0.95570 1.05415 1.22436 0.93065 0.95966 0.85701 0.89896 1.92720 1.95010 1.77652 1.53214 0.92101 0.84803 0.84618 0.85290 0.84517 0.88464 0.89444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.58 13.96 55.43 0.77 -24.81 15 2 C 0.07 2.01 5.45 -17.82 -0.10 1.91 15 3 Si 0.86 19.43 24.41 -169.99 -4.15 15.28 15 4 H -0.27 -5.88 6.80 56.52 0.38 -5.50 15 5 H -0.28 -6.45 7.11 56.52 0.40 -6.05 15 6 H -0.26 -5.28 6.53 56.52 0.37 -4.91 15 7 C -0.51 -13.33 9.07 -34.44 -0.31 -13.64 15 8 H 0.08 2.39 7.99 -52.48 -0.42 1.97 15 9 C 0.00 0.04 1.40 -91.87 -0.13 -0.09 15 10 H 0.07 1.38 7.09 -51.93 -0.37 1.01 15 11 C -0.56 -9.96 5.40 37.18 0.20 -9.76 15 12 S 2.40 38.27 5.31 -107.50 -0.57 37.70 15 13 O -0.95 -17.56 17.95 -57.81 -1.04 -18.60 15 14 O -0.96 -17.26 18.10 -57.81 -1.05 -18.30 15 15 C -0.60 -8.02 6.19 37.18 0.23 -7.79 15 16 C -0.14 -2.14 5.58 -26.92 -0.15 -2.29 15 17 C 0.06 1.26 2.82 -27.05 -0.08 1.18 15 18 H 0.08 1.71 3.15 -51.93 -0.16 1.55 15 19 F -0.21 -4.09 15.09 2.25 0.03 -4.05 15 20 H 0.27 7.25 8.31 -40.82 -0.34 6.91 15 21 H 0.13 2.25 7.49 -51.93 -0.39 1.86 15 22 H 0.14 2.27 8.14 -51.93 -0.42 1.85 15 23 H 0.13 1.34 8.14 -51.93 -0.42 0.92 15 24 H 0.14 1.67 7.49 -51.92 -0.39 1.28 15 25 H 0.10 1.39 8.02 -51.93 -0.42 0.97 15 26 H 0.09 1.12 8.14 -51.93 -0.42 0.70 15 LS Contribution 225.13 15.07 3.39 3.39 Total: -1.00 -31.77 225.13 -5.54 -37.30 By element: Atomic # 1 Polarization: 5.17 SS G_CDS: -2.60 Total: 2.57 kcal Atomic # 6 Polarization: -30.16 SS G_CDS: -0.33 Total: -30.49 kcal Atomic # 7 Polarization: -25.58 SS G_CDS: 0.77 Total: -24.81 kcal Atomic # 8 Polarization: -34.82 SS G_CDS: -2.08 Total: -36.90 kcal Atomic # 9 Polarization: -4.09 SS G_CDS: 0.03 Total: -4.05 kcal Atomic # 14 Polarization: 19.43 SS G_CDS: -4.15 Total: 15.28 kcal Atomic # 16 Polarization: 38.27 SS G_CDS: -0.57 Total: 37.70 kcal Total LS contribution 3.39 Total: 3.39 kcal Total: -31.77 -5.54 -37.30 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259878022.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.553 kcal (2) G-P(sol) polarization free energy of solvation -31.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds