Wall clock time and date at job start Mon Mar 30 2020 03:02:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86795 * 119.99801 * 2 1 4 4 H 1.48504 * 109.47279 * 269.99389 * 3 2 1 5 5 H 1.48496 * 109.47606 * 29.99947 * 3 2 1 6 6 H 1.48503 * 109.47036 * 150.00036 * 3 2 1 7 7 C 1.37872 * 119.99871 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00237 * 0.02562 * 7 2 1 9 9 C 1.50701 * 120.00113 * 180.02562 * 7 2 1 10 10 H 1.09003 * 109.29934 * 60.26181 * 9 7 2 11 11 C 1.53036 * 109.38654 * 180.02562 * 9 7 2 12 12 S 1.81667 * 109.07712 * 183.85454 * 11 9 7 13 13 O 1.42101 * 108.66298 * 59.98171 * 12 11 9 14 14 O 1.42103 * 108.66467 * 191.32186 * 12 11 9 15 15 C 1.81668 * 101.30838 * 305.65187 * 12 11 9 16 16 C 1.53037 * 109.00132 * 54.29937 * 15 12 11 17 17 C 1.52597 * 109.98500 * 296.35726 * 16 15 12 18 18 H 1.08997 * 109.23966 * 190.24520 * 17 16 15 19 19 F 1.39908 * 109.23797 * 309.68177 * 17 16 15 20 20 H 0.97004 * 119.99826 * 0.02562 * 1 2 3 21 21 H 1.09002 * 109.55147 * 63.94863 * 11 9 7 22 22 H 1.09003 * 109.54767 * 303.75678 * 11 9 7 23 23 H 1.09000 * 109.55007 * 174.15498 * 15 12 11 24 24 H 1.09008 * 109.55103 * 294.34978 * 15 12 11 25 25 H 1.08995 * 109.38231 * 56.50890 * 16 15 12 26 26 H 1.08993 * 109.38897 * 176.19949 * 16 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 1 3.8715 -0.6836 0.8944 11 6 4.0195 -2.6377 0.0010 12 16 5.8324 -2.6293 0.1171 13 8 6.2077 -1.9801 1.3242 14 8 6.3111 -3.9410 -0.1468 15 6 6.2740 -1.5570 -1.2813 16 6 5.5273 -0.2280 -1.1453 17 6 4.0225 -0.4633 -1.2394 18 1 3.5135 0.4968 -1.3246 19 9 3.7464 -1.2337 -2.3742 20 1 -0.4850 0.8401 -0.0004 21 1 3.7154 -3.1313 -0.9220 22 1 3.6018 -3.1714 0.8547 23 1 7.3485 -1.3739 -1.2754 24 1 5.9916 -2.0416 -2.2160 25 1 5.7634 0.2225 -0.1814 26 1 5.8388 0.4453 -1.9438 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259878022.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:52 Heat of formation + Delta-G solvation = -145.937139 kcal Electronic energy + Delta-G solvation = -14302.258403 eV Core-core repulsion = 11614.727212 eV Total energy + Delta-G solvation = -2687.531191 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 222.051 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -48.57145 -38.25821 -37.36204 -37.05416 -34.70112 -32.90270 -28.84433 -27.24954 -23.60498 -21.76664 -19.81048 -19.11271 -18.10563 -17.35880 -17.04678 -16.84817 -16.49472 -16.10504 -15.58782 -14.83245 -14.44115 -13.99214 -13.79362 -13.34601 -13.27579 -13.10620 -13.07962 -12.97587 -12.67903 -12.20486 -11.91688 -11.72598 -11.61693 -11.23088 -10.78423 -10.69027 -8.36522 -6.44391 -0.87034 1.23658 1.33914 1.41697 1.75172 2.25312 2.69588 2.92367 2.98387 3.48134 3.58440 3.77970 3.88780 3.94398 4.12000 4.23869 4.55653 4.60799 4.80914 4.97236 5.03856 5.29828 5.44097 6.18875 6.61734 7.19223 8.79913 Molecular weight = 222.05amu Principal moments of inertia in cm(-1) A = 0.042236 B = 0.012311 C = 0.011737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.780257 B = 2273.864323 C = 2384.980530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C 0.010 3.990 3 Si 0.917 3.083 4 H -0.252 1.252 5 H -0.290 1.290 6 H -0.219 1.219 7 C -0.520 4.520 8 H 0.039 0.961 9 C -0.006 4.006 10 H 0.072 0.928 11 C -0.580 4.580 12 S 2.424 3.576 13 O -0.969 6.969 14 O -0.978 6.978 15 C -0.581 4.581 16 C -0.143 4.143 17 C 0.058 3.942 18 H 0.073 0.927 19 F -0.212 7.212 20 H 0.269 0.731 21 H 0.135 0.865 22 H 0.129 0.871 23 H 0.175 0.825 24 H 0.154 0.846 25 H 0.111 0.889 26 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.573 1.525 -3.474 14.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.188 4.188 3 Si 0.740 3.260 4 H -0.178 1.178 5 H -0.216 1.216 6 H -0.141 1.141 7 C -0.559 4.559 8 H 0.057 0.943 9 C -0.026 4.026 10 H 0.090 0.910 11 C -0.709 4.709 12 S 2.611 3.389 13 O -0.967 6.967 14 O -0.975 6.975 15 C -0.713 4.713 16 C -0.181 4.181 17 C 0.022 3.978 18 H 0.091 0.909 19 F -0.193 7.193 20 H 0.078 0.922 21 H 0.153 0.847 22 H 0.148 0.852 23 H 0.192 0.808 24 H 0.172 0.828 25 H 0.130 0.870 26 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 13.988 1.123 -2.854 14.321 hybrid contribution -1.257 0.758 -0.560 1.571 sum 12.731 1.881 -3.414 13.314 Atomic orbital electron populations 1.70027 1.08357 1.28428 1.51311 1.26000 0.95671 1.03301 0.93847 0.86308 0.81060 0.78769 0.79830 1.17781 1.21648 1.14120 1.21060 0.89991 0.93579 1.51272 0.94294 1.19545 0.96876 0.90891 0.95288 0.90986 1.30090 1.23438 1.05343 1.12056 1.07635 0.78007 0.75625 0.77666 1.93514 1.81678 1.77116 1.44361 1.93515 1.79160 1.38207 1.86631 1.29975 1.12279 1.09832 1.19230 1.22073 0.91110 0.97081 1.07836 1.22400 0.96610 0.94730 0.84066 0.90915 1.92711 1.95386 1.77816 1.53350 0.92199 0.84691 0.85223 0.80763 0.82767 0.87047 0.85628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.92 13.96 21.45 0.30 -56.62 15 2 C 0.01 0.55 5.45 84.65 0.46 1.01 15 3 Si 0.92 39.16 24.41 68.60 1.67 40.83 15 4 H -0.25 -9.95 6.80 99.48 0.68 -9.28 15 5 H -0.29 -12.57 7.11 99.48 0.71 -11.86 15 6 H -0.22 -7.98 6.53 99.48 0.65 -7.33 15 7 C -0.52 -28.06 9.07 25.60 0.23 -27.83 15 8 H 0.04 2.36 7.99 -2.91 -0.02 2.33 15 9 C -0.01 -0.25 1.40 -11.60 -0.02 -0.26 15 10 H 0.07 2.88 7.09 -2.39 -0.02 2.86 15 11 C -0.58 -20.42 5.40 71.99 0.39 -20.03 15 12 S 2.42 70.75 5.31 -56.49 -0.30 70.45 15 13 O -0.97 -33.37 17.95 -127.40 -2.29 -35.66 15 14 O -0.98 -33.05 18.10 -127.40 -2.31 -35.36 15 15 C -0.58 -12.17 6.19 71.99 0.45 -11.72 15 16 C -0.14 -3.48 5.58 30.47 0.17 -3.31 15 17 C 0.06 2.08 2.82 30.39 0.09 2.17 15 18 H 0.07 2.76 3.15 -2.39 -0.01 2.75 15 19 F -0.21 -7.96 15.09 44.97 0.68 -7.28 15 20 H 0.27 15.16 8.31 -92.71 -0.77 14.39 15 21 H 0.13 4.59 7.49 -2.39 -0.02 4.57 15 22 H 0.13 4.54 8.14 -2.39 -0.02 4.52 15 23 H 0.17 2.30 8.14 -2.39 -0.02 2.28 15 24 H 0.15 2.88 7.49 -2.38 -0.02 2.86 15 25 H 0.11 2.49 8.02 -2.39 -0.02 2.47 15 26 H 0.13 2.28 8.14 -2.39 -0.02 2.26 15 Total: -1.00 -71.41 225.13 0.63 -70.78 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: 1.10 Total: 12.82 kcal Atomic # 6 Polarization: -61.74 SS G_CDS: 1.77 Total: -59.98 kcal Atomic # 7 Polarization: -56.92 SS G_CDS: 0.30 Total: -56.62 kcal Atomic # 8 Polarization: -66.42 SS G_CDS: -4.59 Total: -71.02 kcal Atomic # 9 Polarization: -7.96 SS G_CDS: 0.68 Total: -7.28 kcal Atomic # 14 Polarization: 39.16 SS G_CDS: 1.67 Total: 40.83 kcal Atomic # 16 Polarization: 70.75 SS G_CDS: -0.30 Total: 70.45 kcal Total: -71.41 0.63 -70.78 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259878022.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.153 kcal (2) G-P(sol) polarization free energy of solvation -71.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds