Wall clock time and date at job start Mon Mar 30 2020 03:02:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86807 * 120.00082 * 2 1 4 4 H 1.48497 * 109.47119 * 270.00105 * 3 2 1 5 5 H 1.48501 * 109.46978 * 30.00340 * 3 2 1 6 6 H 1.48501 * 109.47047 * 150.00199 * 3 2 1 7 7 C 1.37875 * 120.00094 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00335 * 174.80832 * 7 2 1 9 9 C 1.50698 * 119.99821 * 355.09251 * 7 2 1 10 10 H 1.08996 * 109.38905 * 24.44553 * 9 7 2 11 11 C 1.53038 * 109.38182 * 264.65585 * 9 7 2 12 12 S 1.81666 * 108.99852 * 176.19433 * 11 9 7 13 13 O 1.42106 * 108.66427 * 168.62873 * 12 11 9 14 14 O 1.42100 * 108.66489 * 299.87352 * 12 11 9 15 15 C 1.81675 * 101.30993 * 54.30087 * 12 11 9 16 16 C 1.53043 * 108.99599 * 305.70352 * 15 12 11 17 17 C 1.52585 * 109.38444 * 144.23937 * 9 7 2 18 18 H 1.08999 * 109.24472 * 69.84312 * 17 9 7 19 19 F 1.39903 * 109.24372 * 310.43742 * 17 9 7 20 20 H 0.97001 * 119.99793 * 359.97438 * 1 2 3 21 21 H 1.09005 * 109.55279 * 296.05112 * 11 9 7 22 22 H 1.09000 * 109.54964 * 56.24046 * 11 9 7 23 23 H 1.08999 * 109.55109 * 65.55484 * 15 12 11 24 24 H 1.08996 * 109.55223 * 185.84925 * 15 12 11 25 25 H 1.08994 * 109.38445 * 183.80448 * 16 15 12 26 26 H 1.09001 * 109.38257 * 303.59321 * 16 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0812 -1.1960 -0.0841 9 6 1.2551 -2.4966 0.1128 10 1 0.2346 -2.3589 -0.2444 11 6 1.2253 -2.9409 1.5769 12 16 0.2247 -4.4507 1.7166 13 8 0.4143 -5.0037 3.0119 14 8 -1.0933 -4.1659 1.2682 15 6 1.0353 -5.5291 0.4998 16 6 1.0855 -4.8084 -0.8493 17 6 1.9506 -3.5559 -0.7373 18 1 2.9043 -3.8159 -0.2779 19 9 2.1815 -3.0411 -2.0175 20 1 -0.4850 0.8401 0.0004 21 1 2.2408 -3.1435 1.9175 22 1 0.7861 -2.1526 2.1884 23 1 2.0490 -5.7549 0.8306 24 1 0.4686 -6.4546 0.3980 25 1 1.5093 -5.4751 -1.6002 26 1 0.0756 -4.5250 -1.1459 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259878042.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:54 Heat of formation + Delta-G solvation = -157.781681 kcal Electronic energy + Delta-G solvation = -14052.982416 eV Core-core repulsion = 11364.937608 eV Total energy + Delta-G solvation = -2688.044809 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 222.051 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -48.27806 -38.15484 -37.34239 -36.95002 -34.78919 -32.39130 -27.92821 -27.18380 -23.94227 -21.71106 -19.77338 -18.80540 -17.49668 -17.13091 -16.99684 -16.69557 -16.57498 -15.90453 -15.43577 -14.42618 -14.20657 -14.02309 -13.50841 -13.23107 -13.15010 -12.97505 -12.94315 -12.88001 -12.62579 -12.20339 -12.13998 -11.61567 -11.51703 -10.96908 -10.65430 -10.58053 -8.21077 -6.31376 -0.77657 1.40985 1.42077 1.51995 1.88970 2.39262 2.80820 3.02095 3.16344 3.61976 3.71798 3.89789 4.08787 4.23155 4.34421 4.41309 4.65527 4.84363 4.89072 5.14063 5.32052 5.61356 5.68475 6.10528 6.83147 7.35878 8.87920 Molecular weight = 222.05amu Principal moments of inertia in cm(-1) A = 0.035829 B = 0.011501 C = 0.009789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.297467 B = 2434.060867 C = 2859.598803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.010 3.990 3 Si 0.957 3.043 4 H -0.277 1.277 5 H -0.286 1.286 6 H -0.260 1.260 7 C -0.517 4.517 8 H 0.066 0.934 9 C 0.006 3.994 10 H 0.050 0.950 11 C -0.564 4.564 12 S 2.398 3.602 13 O -0.986 6.986 14 O -0.988 6.988 15 C -0.568 4.568 16 C -0.137 4.137 17 C 0.080 3.920 18 H 0.107 0.893 19 F -0.222 7.222 20 H 0.265 0.735 21 H 0.148 0.852 22 H 0.106 0.894 23 H 0.173 0.827 24 H 0.165 0.835 25 H 0.123 0.877 26 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.188 -9.909 0.249 11.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.190 4.190 3 Si 0.782 3.218 4 H -0.203 1.203 5 H -0.212 1.212 6 H -0.184 1.184 7 C -0.556 4.556 8 H 0.084 0.916 9 C -0.014 4.014 10 H 0.068 0.932 11 C -0.695 4.695 12 S 2.588 3.412 13 O -0.983 6.983 14 O -0.986 6.986 15 C -0.700 4.700 16 C -0.176 4.176 17 C 0.044 3.956 18 H 0.125 0.875 19 F -0.202 7.202 20 H 0.074 0.926 21 H 0.166 0.834 22 H 0.125 0.875 23 H 0.191 0.809 24 H 0.183 0.817 25 H 0.141 0.859 26 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 4.265 -9.980 0.821 10.884 hybrid contribution 0.575 1.500 -0.444 1.667 sum 4.840 -8.480 0.376 9.771 Atomic orbital electron populations 1.70060 1.07557 1.27879 1.50677 1.25844 0.95614 1.03151 0.94355 0.85567 0.78938 0.79006 0.78288 1.20278 1.21163 1.18376 1.21216 0.93724 0.90735 1.49961 0.91574 1.19210 0.99228 0.94778 0.88202 0.93207 1.30273 1.15031 1.17165 1.07080 1.08377 0.77119 0.79408 0.76331 1.93486 1.87573 1.78339 1.38931 1.93505 1.37012 1.84875 1.83174 1.29880 1.16718 1.13812 1.09618 1.21921 1.02233 0.96326 0.97120 1.21992 1.01035 0.92546 0.80031 0.87545 1.92735 1.95975 1.89313 1.42212 0.92635 0.83383 0.87538 0.80920 0.81669 0.85906 0.90672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.78 12.76 21.45 0.27 -53.51 15 2 C 0.01 0.54 5.45 84.65 0.46 1.01 15 3 Si 0.96 42.59 29.54 68.60 2.03 44.61 15 4 H -0.28 -12.19 7.11 99.48 0.71 -11.48 15 5 H -0.29 -12.66 7.11 99.48 0.71 -11.95 15 6 H -0.26 -10.91 7.11 99.48 0.71 -10.20 15 7 C -0.52 -26.54 7.76 25.60 0.20 -26.34 15 8 H 0.07 3.26 7.82 -2.91 -0.02 3.23 15 9 C 0.01 0.27 1.96 -11.67 -0.02 0.25 15 10 H 0.05 2.64 7.09 -2.39 -0.02 2.62 15 11 C -0.56 -21.13 5.60 71.99 0.40 -20.73 15 12 S 2.40 78.81 5.30 -56.49 -0.30 78.51 15 13 O -0.99 -35.77 18.10 -127.38 -2.31 -38.08 15 14 O -0.99 -42.25 17.95 -127.38 -2.29 -44.54 15 15 C -0.57 -11.93 6.35 72.00 0.46 -11.48 15 16 C -0.14 -3.65 5.46 30.49 0.17 -3.49 15 17 C 0.08 2.80 3.12 30.34 0.09 2.89 15 18 H 0.11 2.95 8.09 -2.39 -0.02 2.93 15 19 F -0.22 -9.22 16.46 44.97 0.74 -8.48 15 20 H 0.26 14.71 8.31 -92.71 -0.77 13.94 15 21 H 0.15 4.39 8.14 -2.39 -0.02 4.37 15 22 H 0.11 4.53 8.14 -2.39 -0.02 4.51 15 23 H 0.17 2.32 8.14 -2.39 -0.02 2.30 15 24 H 0.17 2.49 8.14 -2.39 -0.02 2.47 15 25 H 0.12 2.47 8.14 -2.39 -0.02 2.45 15 26 H 0.07 2.29 8.01 -2.39 -0.02 2.28 15 Total: -1.00 -72.97 237.16 1.08 -71.88 By element: Atomic # 1 Polarization: 6.30 SS G_CDS: 1.17 Total: 7.47 kcal Atomic # 6 Polarization: -59.64 SS G_CDS: 1.76 Total: -57.88 kcal Atomic # 7 Polarization: -53.78 SS G_CDS: 0.27 Total: -53.51 kcal Atomic # 8 Polarization: -78.02 SS G_CDS: -4.59 Total: -82.61 kcal Atomic # 9 Polarization: -9.22 SS G_CDS: 0.74 Total: -8.48 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 2.03 Total: 44.61 kcal Atomic # 16 Polarization: 78.81 SS G_CDS: -0.30 Total: 78.51 kcal Total: -72.97 1.08 -71.88 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259878042.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.899 kcal (2) G-P(sol) polarization free energy of solvation -72.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds