Wall clock time and date at job start Mon Mar 30 2020 03:02:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 119.99873 * 2 1 4 4 H 1.48501 * 109.46854 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.46969 * 60.00240 * 3 2 1 6 6 H 1.48496 * 109.47140 * 299.99965 * 3 2 1 7 7 C 1.37877 * 120.00220 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00325 * 173.31634 * 7 2 1 9 9 C 1.50702 * 119.99934 * 353.32340 * 7 2 1 10 10 H 1.09007 * 109.38295 * 328.52716 * 9 7 2 11 11 C 1.53034 * 109.38397 * 208.74082 * 9 7 2 12 12 S 1.81672 * 108.99735 * 176.19038 * 11 9 7 13 13 O 1.42102 * 108.66183 * 168.62808 * 12 11 9 14 14 O 1.42104 * 108.66386 * 299.87174 * 12 11 9 15 15 C 1.81666 * 101.30615 * 54.29813 * 12 11 9 16 16 C 1.53034 * 109.00177 * 305.69819 * 15 12 11 17 17 C 1.52590 * 109.38651 * 88.31702 * 9 7 2 18 18 H 1.08995 * 109.24349 * 310.44495 * 17 9 7 19 19 F 1.39897 * 109.23979 * 69.84642 * 17 9 7 20 20 H 0.97000 * 120.00390 * 174.55030 * 1 2 3 21 21 H 1.08994 * 109.54927 * 296.04580 * 11 9 7 22 22 H 1.09003 * 109.55134 * 56.33661 * 11 9 7 23 23 H 1.09004 * 109.55281 * 65.56214 * 15 12 11 24 24 H 1.09008 * 109.54947 * 185.75000 * 15 12 11 25 25 H 1.08994 * 109.38639 * 183.80648 * 16 15 12 26 26 H 1.09000 * 109.38341 * 303.49625 * 16 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3964 1.2125 6 1 1.8903 2.3964 -1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0790 -1.1972 -0.1094 9 6 1.2587 -2.4948 0.1506 10 1 0.3768 -2.3361 0.7713 11 6 2.1697 -3.5281 0.8172 12 16 1.2263 -5.0553 1.0969 13 8 2.1307 -6.0873 1.4660 14 8 0.1244 -4.7603 1.9444 15 6 0.6020 -5.3994 -0.5740 16 6 -0.1415 -4.1662 -1.0920 17 6 0.8267 -2.9938 -1.2251 18 1 0.3354 -2.1832 -1.7633 19 9 1.9557 -3.4044 -1.9420 20 1 -0.4851 -0.8362 -0.0798 21 1 3.0194 -3.7381 0.1676 22 1 2.5255 -3.1392 1.7713 23 1 1.4377 -5.6263 -1.2361 24 1 -0.0786 -6.2503 -0.5411 25 1 -0.5766 -4.3888 -2.0662 26 1 -0.9364 -3.9034 -0.3939 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259878070.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:57 Heat of formation + Delta-G solvation = -137.231199 kcal Electronic energy + Delta-G solvation = -14194.934464 eV Core-core repulsion = 11507.780791 eV Total energy + Delta-G solvation = -2687.153673 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 222.051 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -46.94717 -36.78756 -35.83830 -35.61539 -33.13473 -30.84498 -26.92261 -25.05797 -22.46356 -20.18552 -18.37054 -17.46633 -16.05523 -15.94755 -15.65089 -15.42548 -14.95079 -14.12306 -13.85709 -13.29256 -12.77615 -12.56811 -12.27101 -12.18500 -11.71298 -11.63964 -11.52205 -10.96993 -10.65425 -10.43349 -10.29430 -10.22764 -10.05339 -9.78066 -8.75883 -8.54801 -6.62123 -4.37453 0.47550 3.08318 3.34939 3.36310 3.51265 4.01978 4.31268 4.36261 4.77112 4.91906 5.02198 5.20924 5.44692 5.49122 5.58173 5.71095 5.80723 6.10509 6.14096 6.35949 6.74958 6.97979 7.77736 8.20034 8.57318 9.32697 10.75102 Molecular weight = 222.05amu Principal moments of inertia in cm(-1) A = 0.042479 B = 0.010641 C = 0.010028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.984889 B = 2630.799063 C = 2791.528235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.024 3.976 3 Si 1.075 2.925 4 H -0.287 1.287 5 H -0.283 1.283 6 H -0.286 1.286 7 C -0.588 4.588 8 H 0.061 0.939 9 C 0.016 3.984 10 H 0.071 0.929 11 C -0.562 4.562 12 S 2.394 3.606 13 O -0.963 6.963 14 O -0.946 6.946 15 C -0.602 4.602 16 C -0.139 4.139 17 C 0.075 3.925 18 H 0.094 0.906 19 F -0.216 7.216 20 H 0.271 0.729 21 H 0.126 0.874 22 H 0.131 0.869 23 H 0.133 0.867 24 H 0.126 0.874 25 H 0.083 0.917 26 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.758 -6.594 -2.226 7.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.182 4.182 3 Si 0.902 3.098 4 H -0.213 1.213 5 H -0.209 1.209 6 H -0.212 1.212 7 C -0.627 4.627 8 H 0.079 0.921 9 C -0.004 4.004 10 H 0.088 0.912 11 C -0.694 4.694 12 S 2.580 3.420 13 O -0.960 6.960 14 O -0.943 6.943 15 C -0.731 4.731 16 C -0.178 4.178 17 C 0.038 3.962 18 H 0.112 0.888 19 F -0.197 7.197 20 H 0.082 0.918 21 H 0.145 0.855 22 H 0.149 0.851 23 H 0.151 0.849 24 H 0.144 0.856 25 H 0.102 0.898 26 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 0.438 -5.511 -1.366 5.694 hybrid contribution 0.382 -1.419 -0.953 1.752 sum 0.820 -6.930 -2.319 7.353 Atomic orbital electron populations 1.70785 1.06890 1.31018 1.44820 1.25992 0.96388 1.02990 0.92854 0.83452 0.74608 0.74481 0.77236 1.21275 1.20945 1.21216 1.21814 0.95364 0.90104 1.55447 0.92107 1.19259 0.96118 0.94511 0.90485 0.91151 1.30137 1.12879 1.15614 1.10808 1.08669 0.77010 0.78482 0.77879 1.93522 1.64797 1.56074 1.81620 1.93548 1.52876 1.85202 1.62686 1.30104 1.11777 1.06821 1.24371 1.22016 0.99284 0.92527 1.03934 1.22265 0.82600 0.94856 0.96429 0.88814 1.92677 1.54919 1.91803 1.80341 0.91771 0.85547 0.85098 0.84874 0.85590 0.89836 0.88634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.76 13.55 55.43 0.75 -24.01 15 2 C 0.02 0.62 5.45 -17.82 -0.10 0.52 15 3 Si 1.07 23.59 29.91 -169.99 -5.08 18.51 15 4 H -0.29 -6.05 7.11 56.52 0.40 -5.64 15 5 H -0.28 -6.15 7.11 56.52 0.40 -5.74 15 6 H -0.29 -6.18 7.11 56.52 0.40 -5.77 15 7 C -0.59 -15.02 8.18 -34.44 -0.28 -15.30 15 8 H 0.06 1.57 7.82 -52.49 -0.41 1.16 15 9 C 0.02 0.36 1.44 -91.96 -0.13 0.23 15 10 H 0.07 1.64 6.84 -51.93 -0.36 1.29 15 11 C -0.56 -10.58 5.45 37.17 0.20 -10.37 15 12 S 2.39 40.92 5.30 -107.50 -0.57 40.35 15 13 O -0.96 -18.42 18.10 -57.82 -1.05 -19.46 15 14 O -0.95 -18.95 17.95 -57.82 -1.04 -19.99 15 15 C -0.60 -8.61 6.20 37.17 0.23 -8.38 15 16 C -0.14 -2.19 5.59 -26.90 -0.15 -2.34 15 17 C 0.08 1.48 3.20 -27.13 -0.09 1.40 15 18 H 0.09 1.97 7.81 -51.93 -0.41 1.57 15 19 F -0.22 -4.34 15.08 2.25 0.03 -4.30 15 20 H 0.27 7.20 6.50 -40.82 -0.27 6.94 15 21 H 0.13 2.24 7.48 -51.93 -0.39 1.85 15 22 H 0.13 2.39 8.14 -51.93 -0.42 1.96 15 23 H 0.13 1.76 7.48 -51.92 -0.39 1.38 15 24 H 0.13 1.46 8.14 -51.92 -0.42 1.04 15 25 H 0.08 1.13 8.14 -51.93 -0.42 0.71 15 26 H 0.10 1.47 8.02 -51.93 -0.42 1.05 15 LS Contribution 233.09 15.07 3.51 3.51 Total: -1.00 -31.40 233.09 -6.45 -37.85 By element: Atomic # 1 Polarization: 4.47 SS G_CDS: -2.69 Total: 1.78 kcal Atomic # 6 Polarization: -33.92 SS G_CDS: -0.31 Total: -34.24 kcal Atomic # 7 Polarization: -24.76 SS G_CDS: 0.75 Total: -24.01 kcal Atomic # 8 Polarization: -37.37 SS G_CDS: -2.08 Total: -39.45 kcal Atomic # 9 Polarization: -4.34 SS G_CDS: 0.03 Total: -4.30 kcal Atomic # 14 Polarization: 23.59 SS G_CDS: -5.08 Total: 18.51 kcal Atomic # 16 Polarization: 40.92 SS G_CDS: -0.57 Total: 40.35 kcal Total LS contribution 3.51 Total: 3.51 kcal Total: -31.40 -6.45 -37.85 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259878070.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.377 kcal (2) G-P(sol) polarization free energy of solvation -31.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds