Wall clock time and date at job start Mon Mar 30 2020 03:02:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 119.99873 * 2 1 4 4 H 1.48501 * 109.46854 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.46969 * 60.00240 * 3 2 1 6 6 H 1.48496 * 109.47140 * 299.99965 * 3 2 1 7 7 C 1.37877 * 120.00220 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00325 * 173.31634 * 7 2 1 9 9 C 1.50702 * 119.99934 * 353.32340 * 7 2 1 10 10 H 1.09007 * 109.38295 * 328.52716 * 9 7 2 11 11 C 1.53034 * 109.38397 * 208.74082 * 9 7 2 12 12 S 1.81672 * 108.99735 * 176.19038 * 11 9 7 13 13 O 1.42102 * 108.66183 * 168.62808 * 12 11 9 14 14 O 1.42104 * 108.66386 * 299.87174 * 12 11 9 15 15 C 1.81666 * 101.30615 * 54.29813 * 12 11 9 16 16 C 1.53034 * 109.00177 * 305.69819 * 15 12 11 17 17 C 1.52590 * 109.38651 * 88.31702 * 9 7 2 18 18 H 1.08995 * 109.24349 * 310.44495 * 17 9 7 19 19 F 1.39897 * 109.23979 * 69.84642 * 17 9 7 20 20 H 0.97000 * 120.00390 * 174.55030 * 1 2 3 21 21 H 1.08994 * 109.54927 * 296.04580 * 11 9 7 22 22 H 1.09003 * 109.55134 * 56.33661 * 11 9 7 23 23 H 1.09004 * 109.55281 * 65.56214 * 15 12 11 24 24 H 1.09008 * 109.54947 * 185.75000 * 15 12 11 25 25 H 1.08994 * 109.38639 * 183.80648 * 16 15 12 26 26 H 1.09000 * 109.38341 * 303.49625 * 16 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3964 1.2125 6 1 1.8903 2.3964 -1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0790 -1.1972 -0.1094 9 6 1.2587 -2.4948 0.1506 10 1 0.3768 -2.3361 0.7713 11 6 2.1697 -3.5281 0.8172 12 16 1.2263 -5.0553 1.0969 13 8 2.1307 -6.0873 1.4660 14 8 0.1244 -4.7603 1.9444 15 6 0.6020 -5.3994 -0.5740 16 6 -0.1415 -4.1662 -1.0920 17 6 0.8267 -2.9938 -1.2251 18 1 0.3354 -2.1832 -1.7633 19 9 1.9557 -3.4044 -1.9420 20 1 -0.4851 -0.8362 -0.0798 21 1 3.0194 -3.7381 0.1676 22 1 2.5255 -3.1392 1.7713 23 1 1.4377 -5.6263 -1.2361 24 1 -0.0786 -6.2503 -0.5411 25 1 -0.5766 -4.3888 -2.0662 26 1 -0.9364 -3.9034 -0.3939 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259878070.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:56 Heat of formation + Delta-G solvation = -159.881028 kcal Electronic energy + Delta-G solvation = -14195.916634 eV Core-core repulsion = 11507.780791 eV Total energy + Delta-G solvation = -2688.135843 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 222.051 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -48.54250 -38.29564 -37.44116 -37.10820 -34.78070 -32.48332 -28.36922 -26.89717 -24.02514 -21.77215 -19.79269 -19.26608 -17.54613 -17.44040 -17.19245 -16.88907 -16.47231 -15.74988 -15.55497 -14.88633 -14.20658 -14.02825 -13.92797 -13.74076 -13.23822 -13.12173 -12.86767 -12.69193 -12.24974 -11.98226 -11.97744 -11.85763 -11.71984 -11.27906 -10.66385 -10.37210 -8.66941 -6.41920 -0.91030 1.55097 1.60953 1.71949 1.78721 2.53472 2.65495 2.94240 3.08988 3.52481 3.57942 3.86632 3.90606 3.99003 4.14735 4.24796 4.55510 4.66181 4.79005 4.94043 5.10412 5.34126 5.89460 6.15079 6.55625 7.34187 8.72450 Molecular weight = 222.05amu Principal moments of inertia in cm(-1) A = 0.042479 B = 0.010641 C = 0.010028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.984889 B = 2630.799063 C = 2791.528235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.023 4.023 3 Si 1.113 2.887 4 H -0.275 1.275 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.602 4.602 8 H 0.050 0.950 9 C 0.006 3.994 10 H 0.051 0.949 11 C -0.576 4.576 12 S 2.419 3.581 13 O -0.980 6.980 14 O -0.977 6.977 15 C -0.581 4.581 16 C -0.137 4.137 17 C 0.078 3.922 18 H 0.074 0.926 19 F -0.217 7.217 20 H 0.266 0.734 21 H 0.135 0.865 22 H 0.125 0.875 23 H 0.154 0.846 24 H 0.169 0.831 25 H 0.118 0.882 26 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.727 -7.926 -3.185 8.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.223 4.223 3 Si 0.936 3.064 4 H -0.200 1.200 5 H -0.206 1.206 6 H -0.205 1.205 7 C -0.641 4.641 8 H 0.069 0.931 9 C -0.014 4.014 10 H 0.069 0.931 11 C -0.707 4.707 12 S 2.607 3.393 13 O -0.977 6.977 14 O -0.974 6.974 15 C -0.713 4.713 16 C -0.175 4.175 17 C 0.042 3.958 18 H 0.092 0.908 19 F -0.199 7.199 20 H 0.076 0.924 21 H 0.154 0.846 22 H 0.144 0.856 23 H 0.172 0.828 24 H 0.187 0.813 25 H 0.137 0.863 26 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 0.438 -6.828 -2.295 7.217 hybrid contribution 0.406 -1.079 -0.687 1.342 sum 0.843 -7.907 -2.981 8.493 Atomic orbital electron populations 1.70865 1.07609 1.30848 1.47193 1.27142 0.96593 1.06105 0.92498 0.82954 0.74270 0.71688 0.77495 1.20030 1.20563 1.20536 1.22134 0.95129 0.92012 1.54804 0.93148 1.19231 0.95680 0.94440 0.92035 0.93112 1.30144 1.13192 1.16802 1.10536 1.07766 0.75758 0.76740 0.79059 1.93499 1.65596 1.55640 1.82979 1.93509 1.53427 1.85334 1.65161 1.29958 1.13178 1.07554 1.20566 1.21998 0.98245 0.91115 1.06150 1.22019 0.83132 0.96483 0.94214 0.90819 1.92673 1.55223 1.91764 1.80192 0.92359 0.84636 0.85620 0.82810 0.81336 0.86347 0.88351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -52.06 13.55 21.45 0.29 -51.77 15 2 C -0.02 -1.24 5.45 84.66 0.46 -0.78 15 3 Si 1.11 47.80 29.91 68.60 2.05 49.85 15 4 H -0.28 -11.13 7.11 99.48 0.71 -10.43 15 5 H -0.28 -11.77 7.11 99.48 0.71 -11.06 15 6 H -0.28 -11.63 7.11 99.48 0.71 -10.92 15 7 C -0.60 -31.22 8.18 25.60 0.21 -31.01 15 8 H 0.05 2.64 7.82 -2.91 -0.02 2.62 15 9 C 0.01 0.28 1.44 -11.66 -0.02 0.26 15 10 H 0.05 2.44 6.84 -2.38 -0.02 2.42 15 11 C -0.58 -21.52 5.45 71.99 0.39 -21.13 15 12 S 2.42 78.19 5.30 -56.49 -0.30 77.89 15 13 O -0.98 -35.43 18.10 -127.38 -2.31 -37.74 15 14 O -0.98 -38.11 17.95 -127.38 -2.29 -40.39 15 15 C -0.58 -14.05 6.20 71.99 0.45 -13.61 15 16 C -0.14 -3.84 5.59 30.49 0.17 -3.67 15 17 C 0.08 3.00 3.20 30.34 0.10 3.10 15 18 H 0.07 3.11 7.81 -2.39 -0.02 3.09 15 19 F -0.22 -8.32 15.08 44.97 0.68 -7.64 15 20 H 0.27 14.53 6.50 -92.71 -0.60 13.93 15 21 H 0.14 4.71 7.48 -2.39 -0.02 4.69 15 22 H 0.13 4.69 8.14 -2.39 -0.02 4.67 15 23 H 0.15 3.28 7.48 -2.39 -0.02 3.26 15 24 H 0.17 2.86 8.14 -2.38 -0.02 2.84 15 25 H 0.12 2.64 8.14 -2.39 -0.02 2.62 15 26 H 0.10 2.78 8.02 -2.39 -0.02 2.76 15 Total: -1.00 -67.39 233.09 1.24 -66.16 By element: Atomic # 1 Polarization: 9.14 SS G_CDS: 1.35 Total: 10.48 kcal Atomic # 6 Polarization: -68.60 SS G_CDS: 1.76 Total: -66.84 kcal Atomic # 7 Polarization: -52.06 SS G_CDS: 0.29 Total: -51.77 kcal Atomic # 8 Polarization: -73.54 SS G_CDS: -4.59 Total: -78.13 kcal Atomic # 9 Polarization: -8.32 SS G_CDS: 0.68 Total: -7.64 kcal Atomic # 14 Polarization: 47.80 SS G_CDS: 2.05 Total: 49.85 kcal Atomic # 16 Polarization: 78.19 SS G_CDS: -0.30 Total: 77.89 kcal Total: -67.39 1.24 -66.16 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259878070.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.722 kcal (2) G-P(sol) polarization free energy of solvation -67.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds