Wall clock time and date at job start Mon Mar 30 2020 02:57:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 119.99843 * 2 1 4 4 H 1.48505 * 109.46864 * 274.97734 * 3 2 1 5 5 H 1.48499 * 109.47143 * 34.97266 * 3 2 1 6 6 H 1.48501 * 109.47234 * 154.97724 * 3 2 1 7 7 C 1.37876 * 120.00266 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00155 * 188.73384 * 7 2 1 9 9 C 1.50700 * 120.00092 * 8.74311 * 7 2 1 10 10 H 1.09001 * 110.96501 * 301.13801 * 9 7 2 11 11 C 1.54144 * 111.10379 * 176.95612 * 9 7 2 12 12 C 1.50880 * 110.46943 * 213.63334 * 11 9 7 13 13 C 1.38831 * 115.37160 * 20.88282 * 12 11 9 14 14 C 1.38835 * 121.17263 * 179.22018 * 13 12 11 15 15 C 1.38100 * 120.28065 * 0.04063 * 14 13 12 16 16 C 1.38185 * 119.35019 * 0.52450 * 15 14 13 17 17 C 1.38254 * 120.48028 * 359.34376 * 16 15 14 18 18 O 1.35899 * 119.53536 * 180.25636 * 17 16 15 19 19 S 1.77443 * 108.28588 * 358.99023 * 13 12 11 20 20 H 0.96993 * 120.00147 * 0.02562 * 1 2 3 21 21 H 1.09007 * 109.28820 * 93.36233 * 11 9 7 22 22 H 1.09003 * 109.28875 * 333.90537 * 11 9 7 23 23 H 1.07999 * 119.86023 * 180.30809 * 14 13 12 24 24 H 1.08001 * 120.32600 * 180.27697 * 15 14 13 25 25 H 1.08002 * 119.76041 * 179.61720 * 16 15 14 26 26 H 0.96695 * 114.00654 * 89.99797 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.3914 2.1072 -1.3949 5 1 1.5030 2.6201 0.8025 6 1 3.5953 1.4122 0.5922 7 6 2.0046 -1.1940 0.0005 8 1 3.0752 -1.1993 0.1426 9 6 1.2643 -2.4917 -0.1973 10 1 0.5048 -2.6287 0.5725 11 6 2.2382 -3.6859 -0.2361 12 6 1.7320 -4.7490 -1.1795 13 6 0.8180 -4.3147 -2.1299 14 6 0.2868 -5.1892 -3.0684 15 6 0.6613 -6.5184 -3.0720 16 6 1.5611 -6.9711 -2.1260 17 6 2.0936 -6.1018 -1.1921 18 8 2.9809 -6.5666 -0.2736 19 16 0.5287 -2.5829 -1.8736 20 1 -0.4850 0.8400 -0.0004 21 1 2.3311 -4.1074 0.7648 22 1 3.2163 -3.3420 -0.5727 23 1 -0.4190 -4.8274 -3.8014 24 1 0.2520 -7.1983 -3.8045 25 1 1.8539 -8.0107 -2.1188 26 1 3.9037 -6.5176 -0.5583 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260003237.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:54 Heat of formation + Delta-G solvation = -29.212116 kcal Electronic energy + Delta-G solvation = -12522.022109 eV Core-core repulsion = 10270.321720 eV Total energy + Delta-G solvation = -2251.700389 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 222.046 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.31165 -36.26118 -34.44175 -32.53771 -29.42804 -28.69763 -25.29140 -22.80827 -21.78309 -20.28414 -18.28664 -16.78520 -15.91600 -15.39116 -14.95994 -14.65443 -14.17787 -13.77437 -13.25491 -12.42810 -12.11355 -11.94124 -11.80369 -11.16049 -11.01125 -10.88203 -10.67709 -10.52746 -9.89226 -9.74478 -9.09732 -8.81000 -8.56419 -8.09180 -6.42081 -6.24359 -4.41874 1.65409 1.71699 2.83397 3.18856 3.23887 3.25771 3.83089 4.02412 4.17426 4.61582 5.10059 5.23738 5.33020 5.60049 5.81116 6.03372 6.19198 6.23156 6.28457 6.70367 6.75005 6.77463 6.92374 7.13525 7.23793 7.52587 7.83015 7.97534 8.53917 9.15271 10.64994 Molecular weight = 222.05amu Principal moments of inertia in cm(-1) A = 0.048473 B = 0.008511 C = 0.007575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 577.497675 B = 3289.004651 C = 3695.396506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.849 5.849 2 C 0.070 3.930 3 Si 0.906 3.094 4 H -0.275 1.275 5 H -0.282 1.282 6 H -0.268 1.268 7 C -0.489 4.489 8 H 0.075 0.925 9 C 0.111 3.889 10 H 0.066 0.934 11 C -0.076 4.076 12 C -0.129 4.129 13 C -0.056 4.056 14 C -0.118 4.118 15 C -0.097 4.097 16 C -0.171 4.171 17 C 0.118 3.882 18 O -0.501 6.501 19 S -0.207 6.207 20 H 0.271 0.729 21 H 0.073 0.927 22 H 0.080 0.920 23 H 0.120 0.880 24 H 0.124 0.876 25 H 0.121 0.879 26 H 0.383 0.617 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.713 -8.595 -3.406 9.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.483 5.483 2 C -0.140 4.140 3 Si 0.732 3.268 4 H -0.200 1.200 5 H -0.208 1.208 6 H -0.192 1.192 7 C -0.533 4.533 8 H 0.094 0.906 9 C -0.012 4.012 10 H 0.083 0.917 11 C -0.114 4.114 12 C -0.136 4.136 13 C -0.169 4.169 14 C -0.144 4.144 15 C -0.117 4.117 16 C -0.194 4.194 17 C 0.072 3.928 18 O -0.310 6.310 19 S 0.045 5.955 20 H 0.081 0.919 21 H 0.092 0.908 22 H 0.098 0.902 23 H 0.138 0.862 24 H 0.142 0.858 25 H 0.139 0.861 26 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 2.420 -7.545 -3.769 8.774 hybrid contribution 1.271 -0.086 0.313 1.311 sum 3.690 -7.631 -3.456 9.154 Atomic orbital electron populations 1.69974 1.06350 1.28081 1.43850 1.25201 0.95007 1.00249 0.93592 0.86339 0.79969 0.81969 0.78550 1.20025 1.20775 1.19237 1.20963 0.94472 0.89160 1.48659 0.90647 1.21645 0.95554 0.94658 0.89346 0.91655 1.21019 1.00464 0.92523 0.97407 1.21504 0.99459 0.93950 0.98735 1.22739 0.97244 1.00272 0.96690 1.20434 1.01601 0.92540 0.99786 1.20806 0.97571 0.95080 0.98234 1.20935 1.02244 0.99461 0.96715 1.18339 0.94342 0.89843 0.90293 1.84783 1.18956 1.85334 1.41969 1.87071 1.77694 0.98754 1.31992 0.91865 0.90849 0.90208 0.86205 0.85835 0.86116 0.76213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.44 12.96 55.43 0.72 -22.73 15 2 C 0.07 1.84 5.28 -17.82 -0.09 1.75 15 3 Si 0.91 20.10 29.55 -169.99 -5.02 15.08 15 4 H -0.27 -6.14 7.11 56.52 0.40 -5.73 15 5 H -0.28 -6.19 7.11 56.52 0.40 -5.79 15 6 H -0.27 -5.78 7.11 56.52 0.40 -5.37 15 7 C -0.49 -12.74 8.54 -34.44 -0.29 -13.04 15 8 H 0.08 1.88 7.65 -52.49 -0.40 1.48 15 9 C 0.11 2.79 3.20 -27.29 -0.09 2.70 15 10 H 0.07 1.77 8.14 -51.93 -0.42 1.34 15 11 C -0.08 -1.62 5.64 -27.20 -0.15 -1.77 15 12 C -0.13 -2.66 5.99 -103.64 -0.62 -3.28 15 13 C -0.06 -1.19 6.48 -39.14 -0.25 -1.44 15 14 C -0.12 -2.14 10.05 -39.41 -0.40 -2.54 15 15 C -0.10 -1.48 10.08 -39.65 -0.40 -1.88 15 16 C -0.17 -2.68 9.92 -39.59 -0.39 -3.07 15 17 C 0.12 2.09 6.71 -38.90 -0.26 1.83 15 18 O -0.50 -7.79 13.28 -19.42 -0.26 -8.05 15 19 S -0.21 -5.13 22.03 -107.50 -2.37 -7.50 15 20 H 0.27 7.07 8.31 -40.82 -0.34 6.73 15 21 H 0.07 1.49 8.14 -51.92 -0.42 1.07 15 22 H 0.08 1.66 7.74 -51.93 -0.40 1.26 15 23 H 0.12 1.97 8.06 -52.49 -0.42 1.55 15 24 H 0.12 1.45 8.06 -52.49 -0.42 1.03 15 25 H 0.12 1.56 8.06 -52.49 -0.42 1.14 15 26 H 0.38 4.05 9.06 45.56 0.41 4.46 15 LS Contribution 244.25 15.07 3.68 3.68 Total: -1.00 -29.26 244.25 -7.84 -37.10 By element: Atomic # 1 Polarization: 4.80 SS G_CDS: -1.64 Total: 3.16 kcal Atomic # 6 Polarization: -17.79 SS G_CDS: -2.95 Total: -20.75 kcal Atomic # 7 Polarization: -23.44 SS G_CDS: 0.72 Total: -22.73 kcal Atomic # 8 Polarization: -7.79 SS G_CDS: -0.26 Total: -8.05 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.02 Total: 15.08 kcal Atomic # 16 Polarization: -5.13 SS G_CDS: -2.37 Total: -7.50 kcal Total LS contribution 3.68 Total: 3.68 kcal Total: -29.26 -7.84 -37.10 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260003237.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.888 kcal (2) G-P(sol) polarization free energy of solvation -29.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds