Wall clock time and date at job start Mon Mar 30 2020 02:56:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 120.00175 * 2 1 4 4 H 1.48498 * 109.47200 * 239.72287 * 3 2 1 5 5 H 1.48498 * 109.46671 * 359.72211 * 3 2 1 6 6 H 1.48499 * 109.47156 * 119.72301 * 3 2 1 7 7 C 1.37885 * 119.99913 * 179.72292 * 2 1 3 8 8 H 1.08000 * 119.99535 * 180.02562 * 7 2 1 9 9 C 1.50694 * 119.99902 * 0.02562 * 7 2 1 10 10 H 1.09000 * 109.26233 * 59.29978 * 9 7 2 11 11 C 1.54128 * 109.27353 * 299.78989 * 9 7 2 12 12 S 1.83295 * 101.08471 * 211.54855 * 11 9 7 13 13 C 1.77456 * 96.59379 * 24.88458 * 12 11 9 14 14 C 1.38793 * 130.49161 * 164.53641 * 13 12 11 15 15 C 1.38021 * 120.24170 * 180.21557 * 14 13 12 16 16 C 1.38734 * 119.23778 * 0.04386 * 15 14 13 17 17 O 1.35999 * 119.78972 * 179.87922 * 16 15 14 18 18 C 1.38101 * 120.41555 * 359.90255 * 16 15 14 19 19 C 1.38728 * 108.25160 * 344.62965 * 13 12 11 20 20 H 0.97001 * 119.99646 * 0.28069 * 1 2 3 21 21 H 1.09004 * 111.09879 * 329.50169 * 11 9 7 22 22 H 1.09000 * 111.10008 * 93.59575 * 11 9 7 23 23 H 1.08004 * 119.87844 * 0.23860 * 14 13 12 24 24 H 1.07998 * 120.37854 * 180.02562 * 15 14 13 25 25 H 0.96693 * 114.00011 * 90.00009 * 17 16 15 26 26 H 1.08002 * 119.49275 * 179.97438 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1081 1.6935 -1.2091 5 1 1.2842 2.7464 -0.0068 6 1 3.0979 1.6993 1.2159 7 6 2.0046 -1.1941 0.0058 8 1 3.0846 -1.1940 0.0062 9 6 1.2511 -2.4991 0.0115 10 1 0.6166 -2.5519 -0.8733 11 6 0.3702 -2.5724 1.2741 12 16 0.3703 -4.3763 1.5996 13 6 1.9046 -4.7309 0.7816 14 6 2.7208 -5.8518 0.8433 15 6 3.8888 -5.9024 0.1096 16 6 4.2359 -4.8211 -0.6873 17 8 5.3854 -4.8581 -1.4130 18 6 3.4216 -3.7074 -0.7479 19 6 2.2353 -3.6425 -0.0126 20 1 -0.4850 0.8401 -0.0041 21 1 0.8228 -2.0246 2.1007 22 1 -0.6377 -2.2105 1.0710 23 1 2.4408 -6.6876 1.4674 24 1 4.5253 -6.7737 0.1556 25 1 5.2787 -5.2271 -2.3003 26 1 3.7064 -2.8739 -1.3728 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260003483.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:15 Heat of formation + Delta-G solvation = -25.655665 kcal Electronic energy + Delta-G solvation = -12653.900092 eV Core-core repulsion = 10402.353923 eV Total energy + Delta-G solvation = -2251.546170 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 222.046 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.26508 -36.70956 -34.33079 -31.68026 -29.61930 -28.27684 -25.57122 -22.77801 -22.12019 -20.24413 -17.50424 -16.94839 -16.54823 -15.12205 -14.90236 -14.58595 -13.97849 -13.87523 -13.06525 -12.69548 -11.96651 -11.87557 -11.57674 -11.20774 -11.16525 -10.90120 -10.80974 -10.30513 -9.87716 -9.67947 -9.20383 -8.82316 -8.58397 -8.18433 -6.67248 -6.25951 -4.31828 1.63359 1.84435 2.47030 3.15640 3.24758 3.27123 3.30524 4.03780 4.28542 4.57871 5.07794 5.33233 5.42636 5.81904 5.91989 6.13548 6.32921 6.40855 6.53114 6.63196 6.85631 6.96887 7.07961 7.23758 7.39064 7.70747 7.98691 8.03402 8.69854 9.34214 10.82522 Molecular weight = 222.05amu Principal moments of inertia in cm(-1) A = 0.027252 B = 0.011039 C = 0.008146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.198053 B = 2535.953651 C = 3436.549591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.066 3.934 3 Si 0.900 3.100 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.516 4.516 8 H 0.065 0.935 9 C 0.069 3.931 10 H 0.062 0.938 11 C -0.023 4.023 12 S -0.233 6.233 13 C -0.091 4.091 14 C -0.082 4.082 15 C -0.150 4.150 16 C 0.090 3.910 17 O -0.501 6.501 18 C -0.117 4.117 19 C -0.038 4.038 20 H 0.267 0.733 21 H 0.084 0.916 22 H 0.112 0.888 23 H 0.121 0.879 24 H 0.126 0.874 25 H 0.382 0.618 26 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.822 -7.684 -1.104 8.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.138 4.138 3 Si 0.727 3.273 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.555 4.555 8 H 0.083 0.917 9 C 0.049 3.951 10 H 0.080 0.920 11 C -0.171 4.171 12 S 0.010 5.990 13 C -0.203 4.203 14 C -0.106 4.106 15 C -0.170 4.170 16 C 0.044 3.956 17 O -0.311 6.311 18 C -0.138 4.138 19 C -0.043 4.043 20 H 0.076 0.924 21 H 0.103 0.897 22 H 0.130 0.870 23 H 0.139 0.861 24 H 0.144 0.856 25 H 0.237 0.763 26 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 2.928 -7.984 0.096 8.505 hybrid contribution 1.126 1.438 -1.031 2.097 sum 4.054 -6.546 -0.935 7.756 Atomic orbital electron populations 1.69893 1.05974 1.27466 1.49215 1.25008 0.94986 0.99492 0.94301 0.86506 0.79543 0.82272 0.78951 1.19991 1.21081 1.20001 1.21018 0.93130 0.88924 1.52410 0.91705 1.18296 0.91206 0.91189 0.94383 0.92038 1.24698 1.05263 0.85379 1.01748 1.85578 1.24129 1.17173 1.72155 1.22065 0.98172 0.97868 1.02185 1.20141 0.93469 0.96836 1.00149 1.21080 0.97200 0.98475 1.00294 1.18201 0.86921 0.93960 0.96537 1.84851 1.29898 1.86063 1.30250 1.21177 0.93079 0.98134 1.01372 1.21490 0.95165 0.94645 0.92964 0.92360 0.89702 0.87011 0.86081 0.85628 0.76347 0.85129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.69 12.06 55.43 0.67 -23.02 15 2 C 0.07 1.70 5.30 -17.82 -0.09 1.61 15 3 Si 0.90 20.36 29.54 -169.99 -5.02 15.34 15 4 H -0.27 -6.17 7.11 56.52 0.40 -5.76 15 5 H -0.29 -6.40 7.11 56.52 0.40 -6.00 15 6 H -0.27 -6.22 7.11 56.52 0.40 -5.82 15 7 C -0.52 -13.38 8.05 -34.44 -0.28 -13.66 15 8 H 0.06 1.69 7.04 -52.49 -0.37 1.32 15 9 C 0.07 1.66 2.52 -92.25 -0.23 1.43 15 10 H 0.06 1.60 8.14 -51.93 -0.42 1.18 15 11 C -0.02 -0.54 6.03 37.75 0.23 -0.31 15 12 S -0.23 -4.80 23.08 -107.50 -2.48 -7.28 15 13 C -0.09 -1.85 6.47 -39.20 -0.25 -2.11 15 14 C -0.08 -1.43 10.05 -39.46 -0.40 -1.82 15 15 C -0.15 -2.42 10.02 -39.48 -0.40 -2.82 15 16 C 0.09 1.57 6.67 -39.45 -0.26 1.30 15 17 O -0.50 -7.52 13.49 -19.74 -0.27 -7.79 15 18 C -0.12 -2.35 9.11 -39.08 -0.36 -2.71 15 19 C -0.04 -0.83 5.54 -103.80 -0.58 -1.40 15 20 H 0.27 6.82 8.31 -40.82 -0.34 6.48 15 21 H 0.08 2.02 7.92 -51.93 -0.41 1.61 15 22 H 0.11 2.64 7.65 -51.93 -0.40 2.24 15 23 H 0.12 1.81 8.06 -52.48 -0.42 1.39 15 24 H 0.13 1.65 8.06 -52.49 -0.42 1.23 15 25 H 0.38 3.70 9.06 45.56 0.41 4.11 15 26 H 0.13 2.63 7.64 -52.49 -0.40 2.23 15 LS Contribution 241.13 15.07 3.63 3.63 Total: -1.00 -27.75 241.13 -7.65 -35.40 By element: Atomic # 1 Polarization: 5.77 SS G_CDS: -1.57 Total: 4.20 kcal Atomic # 6 Polarization: -17.87 SS G_CDS: -2.62 Total: -20.49 kcal Atomic # 7 Polarization: -23.69 SS G_CDS: 0.67 Total: -23.02 kcal Atomic # 8 Polarization: -7.52 SS G_CDS: -0.27 Total: -7.79 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.34 kcal Atomic # 16 Polarization: -4.80 SS G_CDS: -2.48 Total: -7.28 kcal Total LS contribution 3.63 Total: 3.63 kcal Total: -27.75 -7.65 -35.40 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260003483.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.746 kcal (2) G-P(sol) polarization free energy of solvation -27.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds