Wall clock time and date at job start Mon Mar 30 2020 02:44:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30718 * 1 3 3 Si 1.86804 * 120.00062 * 2 1 4 4 H 1.48500 * 109.46921 * 239.99970 * 3 2 1 5 5 H 1.48499 * 109.47284 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.46990 * 120.00095 * 3 2 1 7 7 C 1.40254 * 119.99769 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99767 * 180.02562 * 7 2 1 9 9 C 1.39705 * 120.00028 * 359.97438 * 7 2 1 10 10 C 1.39040 * 125.54125 * 180.02562 * 9 7 2 11 11 C 1.41166 * 106.60722 * 179.97438 * 10 9 7 12 12 C 1.41052 * 106.61487 * 0.02562 * 11 10 9 13 13 C 1.38655 * 119.34900 * 179.97438 * 12 11 10 14 14 C 1.38120 * 120.10562 * 0.25760 * 13 12 11 15 15 C 1.38768 * 120.76225 * 359.55693 * 14 13 12 16 16 C 1.37717 * 120.31894 * 0.40515 * 15 14 13 17 17 Cl 1.73599 * 120.20713 * 179.79680 * 16 15 14 18 18 O 1.35077 * 107.93173 * 359.97438 * 12 11 10 19 19 H 0.97002 * 119.99500 * 359.97438 * 1 2 3 20 20 H 1.08009 * 126.69230 * 359.97438 * 10 9 7 21 21 H 1.08002 * 119.94203 * 179.97438 * 13 12 11 22 22 H 1.08004 * 119.61608 * 179.72068 * 14 13 12 23 23 H 1.08001 * 119.84471 * 180.22146 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3072 0.0000 0.0000 3 14 2.2412 1.6178 0.0000 4 1 3.0950 1.6964 -1.2125 5 1 1.2763 2.7465 -0.0006 6 1 3.0950 1.6964 1.2125 7 6 2.0084 -1.2147 -0.0005 8 1 3.0884 -1.2147 -0.0001 9 6 1.3098 -2.4245 -0.0005 10 6 1.8855 -3.6902 -0.0005 11 6 0.8211 -4.6175 0.0001 12 6 -0.3709 -3.8633 -0.0002 13 6 -1.5914 -4.5213 -0.0003 14 6 -1.6342 -5.9018 0.0053 15 6 -0.4643 -6.6482 0.0018 16 6 0.7612 -6.0200 0.0011 17 17 2.2228 -6.9566 0.0020 18 8 -0.0352 -2.5549 -0.0003 19 1 -0.4849 0.8401 0.0004 20 1 2.9410 -3.9191 -0.0009 21 1 -2.5100 -3.9533 0.0000 22 1 -2.5892 -6.4062 0.0098 23 1 -0.5151 -7.7270 0.0026 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260003812.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:53 Heat of formation + Delta-G solvation = -7.649867 kcal Electronic energy + Delta-G solvation = -12300.879969 eV Core-core repulsion = 9912.237788 eV Total energy + Delta-G solvation = -2388.642181 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 222.019 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.79781 -36.87226 -35.39919 -33.97596 -31.46392 -29.27643 -28.92565 -25.51761 -21.80365 -21.21805 -19.94871 -18.04210 -16.23607 -15.50578 -15.24585 -14.56535 -14.41867 -13.66453 -13.05904 -12.41541 -12.15017 -11.98895 -11.52905 -11.37559 -11.28317 -10.97993 -10.46774 -10.46002 -10.07819 -10.06870 -9.75083 -8.83930 -7.66780 -7.22601 -7.13587 -4.76563 1.89782 2.38290 2.81217 2.85884 2.89497 3.08513 3.61454 3.62771 4.35432 4.63238 4.93732 5.66742 5.82450 5.99210 6.17300 6.45118 6.64637 6.78776 6.90652 7.06901 7.21061 7.38978 7.45200 7.62249 7.82341 8.18071 8.30213 8.83821 9.73935 Molecular weight = 222.02amu Principal moments of inertia in cm(-1) A = 0.044723 B = 0.008339 C = 0.007046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.920675 B = 3357.036219 C = 3973.114029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.753 5.753 2 C 0.063 3.937 3 Si 0.931 3.069 4 H -0.258 1.258 5 H -0.273 1.273 6 H -0.258 1.258 7 C -0.418 4.418 8 H 0.114 0.886 9 C 0.244 3.756 10 C -0.410 4.410 11 C -0.032 4.032 12 C -0.013 4.013 13 C -0.082 4.082 14 C -0.177 4.177 15 C -0.109 4.109 16 C -0.067 4.067 17 Cl -0.103 7.103 18 O -0.168 6.168 19 H 0.293 0.707 20 H 0.126 0.874 21 H 0.115 0.885 22 H 0.119 0.881 23 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.425 -2.622 0.006 2.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.376 5.376 2 C -0.162 4.162 3 Si 0.754 3.246 4 H -0.182 1.182 5 H -0.197 1.197 6 H -0.182 1.182 7 C -0.445 4.445 8 H 0.132 0.868 9 C 0.193 3.807 10 C -0.431 4.431 11 C -0.034 4.034 12 C -0.061 4.061 13 C -0.101 4.101 14 C -0.195 4.195 15 C -0.128 4.128 16 C -0.094 4.094 17 Cl -0.075 7.075 18 O -0.069 6.069 19 H 0.104 0.896 20 H 0.144 0.856 21 H 0.133 0.867 22 H 0.137 0.863 23 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -0.723 -2.359 0.006 2.467 hybrid contribution 0.522 0.481 -0.001 0.709 sum -0.201 -1.878 0.006 1.889 Atomic orbital electron populations 1.69715 1.07843 1.30947 1.29078 1.26354 0.95190 1.02653 0.91987 0.85952 0.79842 0.78244 0.80573 1.18209 1.19730 1.18205 1.19077 0.95242 0.87331 1.42824 0.86824 1.19589 0.78434 0.94238 0.88461 1.20958 0.97319 0.90045 1.34755 1.18531 0.94623 0.91379 0.98849 1.19636 0.94376 0.83290 1.08750 1.19715 0.93993 0.93473 1.02944 1.20226 0.96886 0.92192 1.10224 1.20472 0.90625 0.98828 1.02894 1.20030 0.85912 0.89409 1.14009 1.98257 1.38594 1.73170 1.97458 1.84662 1.23890 1.21439 1.76884 0.89567 0.85566 0.86663 0.86282 0.86683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -18.56 11.96 55.57 0.66 -17.90 14 2 C 0.06 1.47 5.50 -17.27 -0.09 1.37 14 3 Si 0.93 16.89 29.56 -169.99 -5.03 11.86 14 4 H -0.26 -4.59 7.11 56.52 0.40 -4.19 14 5 H -0.27 -4.80 7.11 56.52 0.40 -4.40 14 6 H -0.26 -4.59 7.11 56.52 0.40 -4.19 14 7 C -0.42 -10.44 9.30 -38.28 -0.36 -10.79 14 8 H 0.11 2.60 7.85 -52.48 -0.41 2.18 14 9 C 0.24 6.55 6.75 -38.74 -0.26 6.29 14 10 C -0.41 -10.59 10.80 -38.17 -0.41 -11.00 14 11 C -0.03 -0.80 6.05 -106.91 -0.65 -1.45 14 12 C -0.01 -0.33 7.37 -38.36 -0.28 -0.61 14 13 C -0.08 -1.75 10.05 -39.47 -0.40 -2.15 14 14 C -0.18 -3.31 10.02 -39.43 -0.40 -3.71 14 15 C -0.11 -2.12 9.81 -39.58 -0.39 -2.50 14 16 C -0.07 -1.47 6.37 -38.97 -0.25 -1.72 14 17 Cl -0.10 -2.02 28.87 -51.86 -1.50 -3.51 14 18 O -0.17 -4.61 8.90 1.20 0.01 -4.60 14 19 H 0.29 6.42 8.29 -40.82 -0.34 6.08 14 20 H 0.13 3.10 8.06 -52.48 -0.42 2.68 14 21 H 0.12 2.18 8.06 -52.49 -0.42 1.76 14 22 H 0.12 1.80 8.06 -52.48 -0.42 1.37 14 23 H 0.12 1.89 8.06 -52.49 -0.42 1.47 14 LS Contribution 231.00 15.07 3.48 3.48 Total: -1.00 -27.09 231.00 -7.09 -34.18 By element: Atomic # 1 Polarization: 4.00 SS G_CDS: -1.24 Total: 2.76 kcal Atomic # 6 Polarization: -22.79 SS G_CDS: -3.48 Total: -26.28 kcal Atomic # 7 Polarization: -18.56 SS G_CDS: 0.66 Total: -17.90 kcal Atomic # 8 Polarization: -4.61 SS G_CDS: 0.01 Total: -4.60 kcal Atomic # 14 Polarization: 16.89 SS G_CDS: -5.03 Total: 11.86 kcal Atomic # 17 Polarization: -2.02 SS G_CDS: -1.50 Total: -3.51 kcal Total LS contribution 3.48 Total: 3.48 kcal Total: -27.09 -7.09 -34.18 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260003812.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.526 kcal (2) G-P(sol) polarization free energy of solvation -27.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds