Wall clock time and date at job start Mon Mar 30 2020 02:44:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30718 * 1 3 3 Si 1.86804 * 120.00062 * 2 1 4 4 H 1.48500 * 109.46921 * 239.99970 * 3 2 1 5 5 H 1.48499 * 109.47284 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.46990 * 120.00095 * 3 2 1 7 7 C 1.40254 * 119.99769 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99767 * 180.02562 * 7 2 1 9 9 C 1.39705 * 120.00028 * 359.97438 * 7 2 1 10 10 C 1.39040 * 125.54125 * 180.02562 * 9 7 2 11 11 C 1.41166 * 106.60722 * 179.97438 * 10 9 7 12 12 C 1.41052 * 106.61487 * 0.02562 * 11 10 9 13 13 C 1.38655 * 119.34900 * 179.97438 * 12 11 10 14 14 C 1.38120 * 120.10562 * 0.25760 * 13 12 11 15 15 C 1.38768 * 120.76225 * 359.55693 * 14 13 12 16 16 C 1.37717 * 120.31894 * 0.40515 * 15 14 13 17 17 Cl 1.73599 * 120.20713 * 179.79680 * 16 15 14 18 18 O 1.35077 * 107.93173 * 359.97438 * 12 11 10 19 19 H 0.97002 * 119.99500 * 359.97438 * 1 2 3 20 20 H 1.08009 * 126.69230 * 359.97438 * 10 9 7 21 21 H 1.08002 * 119.94203 * 179.97438 * 13 12 11 22 22 H 1.08004 * 119.61608 * 179.72068 * 14 13 12 23 23 H 1.08001 * 119.84471 * 180.22146 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3072 0.0000 0.0000 3 14 2.2412 1.6178 0.0000 4 1 3.0950 1.6964 -1.2125 5 1 1.2763 2.7465 -0.0006 6 1 3.0950 1.6964 1.2125 7 6 2.0084 -1.2147 -0.0005 8 1 3.0884 -1.2147 -0.0001 9 6 1.3098 -2.4245 -0.0005 10 6 1.8855 -3.6902 -0.0005 11 6 0.8211 -4.6175 0.0001 12 6 -0.3709 -3.8633 -0.0002 13 6 -1.5914 -4.5213 -0.0003 14 6 -1.6342 -5.9018 0.0053 15 6 -0.4643 -6.6482 0.0018 16 6 0.7612 -6.0200 0.0011 17 17 2.2228 -6.9566 0.0020 18 8 -0.0352 -2.5549 -0.0003 19 1 -0.4849 0.8401 0.0004 20 1 2.9410 -3.9191 -0.0009 21 1 -2.5100 -3.9533 0.0000 22 1 -2.5892 -6.4062 0.0098 23 1 -0.5151 -7.7270 0.0026 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260003812.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:53 Heat of formation + Delta-G solvation = -22.134695 kcal Electronic energy + Delta-G solvation = -12301.508078 eV Core-core repulsion = 9912.237788 eV Total energy + Delta-G solvation = -2389.270290 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 222.019 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.63944 -38.57089 -37.03403 -35.76155 -33.28863 -31.03355 -30.66874 -27.30777 -23.54739 -22.95039 -21.81437 -19.84502 -18.01285 -17.18721 -16.92622 -16.48627 -16.02314 -15.34945 -14.70475 -14.04817 -13.82748 -13.70884 -13.15430 -13.05483 -12.99030 -12.60139 -12.07865 -11.99911 -11.80469 -11.68408 -11.41186 -10.64996 -9.42654 -8.96264 -8.92588 -6.64703 0.18769 0.67933 1.31346 1.36199 1.42023 1.53029 1.90187 2.10591 2.55947 2.90265 3.08106 4.12489 4.17588 4.37627 4.49390 4.81009 4.90467 5.05757 5.16990 5.26573 5.55167 5.63726 5.69988 5.81192 6.06946 6.37171 6.43202 6.95011 8.03990 Molecular weight = 222.02amu Principal moments of inertia in cm(-1) A = 0.044723 B = 0.008339 C = 0.007046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.920675 B = 3357.036219 C = 3973.114029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.021 3.979 3 Si 1.012 2.988 4 H -0.251 1.251 5 H -0.262 1.262 6 H -0.251 1.251 7 C -0.449 4.449 8 H 0.124 0.876 9 C 0.211 3.789 10 C -0.437 4.437 11 C -0.059 4.059 12 C -0.054 4.054 13 C -0.091 4.091 14 C -0.150 4.150 15 C -0.103 4.103 16 C -0.078 4.078 17 Cl -0.086 7.086 18 O -0.193 6.193 19 H 0.303 0.697 20 H 0.124 0.876 21 H 0.135 0.865 22 H 0.171 0.829 23 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.209 -3.465 0.011 3.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.417 5.417 2 C -0.199 4.199 3 Si 0.829 3.171 4 H -0.174 1.174 5 H -0.185 1.185 6 H -0.174 1.174 7 C -0.476 4.476 8 H 0.141 0.859 9 C 0.160 3.840 10 C -0.458 4.458 11 C -0.061 4.061 12 C -0.101 4.101 13 C -0.109 4.109 14 C -0.168 4.168 15 C -0.122 4.122 16 C -0.105 4.105 17 Cl -0.057 7.057 18 O -0.094 6.094 19 H 0.114 0.886 20 H 0.142 0.858 21 H 0.153 0.847 22 H 0.188 0.812 23 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -1.513 -3.237 0.011 3.573 hybrid contribution 0.644 0.477 -0.002 0.802 sum -0.868 -2.760 0.009 2.894 Atomic orbital electron populations 1.69780 1.09639 1.32535 1.29707 1.27419 0.95919 1.06049 0.90533 0.84791 0.78416 0.72996 0.80886 1.17437 1.18536 1.17425 1.19519 0.95976 0.88037 1.44019 0.85861 1.20073 0.78701 0.95388 0.89817 1.21032 0.97555 0.90553 1.36658 1.18771 0.94272 0.92849 1.00165 1.20311 0.96117 0.82812 1.10863 1.20213 0.93415 0.94885 1.02434 1.20877 0.98914 0.91017 1.05964 1.21017 0.89562 1.00932 1.00672 1.20375 0.87874 0.88741 1.13508 1.98257 1.37865 1.72228 1.97366 1.84582 1.24210 1.23031 1.77624 0.88625 0.85753 0.84699 0.81209 0.82732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -40.28 11.96 21.88 0.26 -40.02 14 2 C 0.02 1.02 5.50 85.35 0.47 1.49 14 3 Si 1.01 34.55 29.56 68.60 2.03 36.57 14 4 H -0.25 -8.19 7.11 99.48 0.71 -7.49 14 5 H -0.26 -8.35 7.11 99.48 0.71 -7.64 14 6 H -0.25 -8.19 7.11 99.48 0.71 -7.48 14 7 C -0.45 -23.46 9.30 23.11 0.21 -23.24 14 8 H 0.12 5.89 7.85 -2.91 -0.02 5.86 14 9 C 0.21 11.95 6.75 22.82 0.15 12.11 14 10 C -0.44 -23.71 10.80 23.18 0.25 -23.46 14 11 C -0.06 -3.00 6.05 -21.35 -0.13 -3.13 14 12 C -0.05 -2.79 7.37 23.06 0.17 -2.62 14 13 C -0.09 -3.71 10.05 22.34 0.22 -3.49 14 14 C -0.15 -4.98 10.02 22.37 0.22 -4.76 14 15 C -0.10 -3.61 9.81 22.27 0.22 -3.40 14 16 C -0.08 -3.34 6.37 22.67 0.14 -3.20 14 17 Cl -0.09 -3.24 28.87 -2.72 -0.08 -3.31 14 18 O -0.19 -11.09 8.90 -18.64 -0.17 -11.25 14 19 H 0.30 13.51 8.29 -92.71 -0.77 12.74 14 20 H 0.12 6.46 8.06 -2.91 -0.02 6.44 14 21 H 0.14 4.87 8.06 -2.91 -0.02 4.85 14 22 H 0.17 3.99 8.06 -2.91 -0.02 3.97 14 23 H 0.16 4.22 8.06 -2.91 -0.02 4.19 14 Total: -1.00 -61.50 231.00 5.22 -56.27 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: 1.24 Total: 15.45 kcal Atomic # 6 Polarization: -55.65 SS G_CDS: 1.94 Total: -53.71 kcal Atomic # 7 Polarization: -40.28 SS G_CDS: 0.26 Total: -40.02 kcal Atomic # 8 Polarization: -11.09 SS G_CDS: -0.17 Total: -11.25 kcal Atomic # 14 Polarization: 34.55 SS G_CDS: 2.03 Total: 36.57 kcal Atomic # 17 Polarization: -3.24 SS G_CDS: -0.08 Total: -3.31 kcal Total: -61.50 5.22 -56.27 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260003812.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.139 kcal (2) G-P(sol) polarization free energy of solvation -61.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds