Wall clock time and date at job start Mon Mar 30 2020 03:02:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86808 * 120.00238 * 2 1 4 4 H 1.48500 * 109.46904 * 270.00391 * 3 2 1 5 5 H 1.48505 * 109.46773 * 29.99658 * 3 2 1 6 6 H 1.48497 * 109.47284 * 149.99840 * 3 2 1 7 7 C 1.37875 * 119.99965 * 179.97438 * 2 1 3 8 8 H 1.08009 * 120.00067 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00280 * 359.97438 * 7 2 1 10 10 H 1.09003 * 109.20531 * 60.57424 * 9 7 2 11 11 C 1.52586 * 109.24540 * 180.02562 * 9 7 2 12 12 C 1.53030 * 109.98404 * 190.28793 * 11 9 7 13 13 S 1.81671 * 108.99998 * 296.34881 * 12 11 9 14 14 O 1.42098 * 108.66352 * 168.62984 * 13 12 11 15 15 O 1.42097 * 108.66608 * 299.97065 * 13 12 11 16 16 C 1.81677 * 101.30649 * 54.30179 * 13 12 11 17 17 C 1.52589 * 109.23891 * 301.15862 * 9 7 2 18 18 H 1.09000 * 109.38633 * 49.55255 * 17 9 7 19 19 F 1.39902 * 109.38550 * 289.86605 * 17 9 7 20 20 H 0.97006 * 119.99876 * 0.02562 * 1 2 3 21 21 H 1.08997 * 109.38242 * 310.44539 * 11 9 7 22 22 H 1.08998 * 109.38408 * 70.23460 * 11 9 7 23 23 H 1.09001 * 109.55315 * 56.20514 * 12 11 9 24 24 H 1.09001 * 109.55093 * 176.39832 * 12 11 9 25 25 H 1.09001 * 109.54420 * 65.55664 * 16 13 12 26 26 H 1.09000 * 109.54994 * 185.75012 * 16 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0017 10 1 0.6334 -2.5575 -0.8946 11 6 2.2472 -3.6550 0.0027 12 6 1.5168 -4.9752 -0.2529 13 16 0.3643 -5.2882 1.1161 14 8 -0.4927 -6.3618 0.7525 15 8 1.1057 -5.3673 2.3257 16 6 -0.6028 -3.7503 1.1263 17 6 0.3546 -2.5611 1.2349 18 1 -0.2216 -1.6389 1.3101 19 9 1.1474 -2.7055 2.3786 20 1 -0.4850 0.8401 -0.0004 21 1 2.9886 -3.4942 -0.7799 22 1 2.7468 -3.7011 0.9704 23 1 0.9621 -4.9099 -1.1890 24 1 2.2415 -5.7871 -0.3143 25 1 -1.1764 -3.6740 0.2026 26 1 -1.2823 -3.7523 1.9786 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260055613.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:43 Heat of formation + Delta-G solvation = -129.739412 kcal Electronic energy + Delta-G solvation = -14246.042674 eV Core-core repulsion = 11559.213870 eV Total energy + Delta-G solvation = -2686.828805 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 222.051 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -46.54880 -36.61766 -35.87498 -35.54943 -32.50636 -30.72378 -27.95029 -23.92925 -22.78958 -19.79417 -18.29543 -17.00964 -16.29962 -15.95287 -15.36362 -14.91470 -14.44218 -14.13549 -13.87303 -13.26368 -12.62811 -12.35584 -12.08392 -11.90795 -11.66067 -11.53107 -11.10105 -11.03440 -10.79941 -10.70752 -10.31925 -10.01746 -9.77068 -9.33164 -9.08280 -8.61583 -6.29114 -4.35828 0.50786 3.10774 3.19058 3.26784 3.30972 4.05096 4.23117 4.46421 4.96221 5.07302 5.16244 5.20153 5.48648 5.71449 5.84721 6.14735 6.26189 6.36637 6.57722 6.75261 7.23245 7.37005 7.72008 8.01223 8.66453 9.31157 10.77159 Molecular weight = 222.05amu Principal moments of inertia in cm(-1) A = 0.057834 B = 0.009924 C = 0.009700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 484.028187 B = 2820.829676 C = 2885.830014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.059 3.941 3 Si 0.903 3.097 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.271 1.271 7 C -0.508 4.508 8 H 0.066 0.934 9 C 0.008 3.992 10 H 0.053 0.947 11 C -0.103 4.103 12 C -0.597 4.597 13 S 2.409 3.591 14 O -0.964 6.964 15 O -0.934 6.934 16 C -0.624 4.624 17 C 0.095 3.905 18 H 0.137 0.863 19 F -0.211 7.211 20 H 0.267 0.733 21 H 0.079 0.921 22 H 0.079 0.921 23 H 0.127 0.873 24 H 0.122 0.878 25 H 0.140 0.860 26 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.121 -5.283 -0.968 5.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.142 4.142 3 Si 0.730 3.270 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.196 1.196 7 C -0.546 4.546 8 H 0.085 0.915 9 C -0.011 4.011 10 H 0.071 0.929 11 C -0.142 4.142 12 C -0.727 4.727 13 S 2.593 3.407 14 O -0.962 6.962 15 O -0.931 6.931 16 C -0.755 4.755 17 C 0.057 3.943 18 H 0.154 0.846 19 F -0.192 7.192 20 H 0.077 0.923 21 H 0.098 0.902 22 H 0.098 0.902 23 H 0.145 0.855 24 H 0.141 0.859 25 H 0.159 0.841 26 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -0.332 -5.926 -0.382 5.948 hybrid contribution 0.287 1.504 -0.545 1.625 sum -0.045 -4.422 -0.927 4.519 Atomic orbital electron populations 1.69707 1.06058 1.27444 1.50242 1.25024 0.95048 0.99778 0.94363 0.86397 0.79943 0.82424 0.78218 1.20489 1.21011 1.19568 1.21039 0.93481 0.89269 1.50790 0.91541 1.19387 0.93652 0.94314 0.93732 0.92949 1.21395 0.99576 0.89525 1.03662 1.30203 1.15644 1.08179 1.18660 1.08159 0.77703 0.77223 0.77658 1.93526 1.66470 1.51290 1.84877 1.93569 1.71196 1.86157 1.42174 1.30822 1.13620 1.19413 1.11609 1.21729 0.90522 0.97433 0.84570 0.84616 1.92772 1.76491 1.96894 1.53058 0.92284 0.90189 0.90235 0.85496 0.85934 0.84135 0.85463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.19 11.19 55.43 0.62 -22.57 15 2 C 0.06 1.51 5.26 -17.82 -0.09 1.42 15 3 Si 0.90 20.03 29.54 -169.99 -5.02 15.01 15 4 H -0.28 -6.11 7.11 56.52 0.40 -5.71 15 5 H -0.28 -6.31 7.11 56.52 0.40 -5.91 15 6 H -0.27 -6.01 7.11 56.52 0.40 -5.61 15 7 C -0.51 -12.75 8.45 -34.44 -0.29 -13.04 15 8 H 0.07 1.65 7.74 -52.48 -0.41 1.24 15 9 C 0.01 0.17 1.73 -92.19 -0.16 0.01 15 10 H 0.05 1.15 8.09 -51.93 -0.42 0.73 15 11 C -0.10 -1.92 4.89 -26.93 -0.13 -2.06 15 12 C -0.60 -9.04 6.35 37.17 0.24 -8.80 15 13 S 2.41 40.97 5.26 -107.50 -0.57 40.40 15 14 O -0.96 -17.92 18.10 -57.81 -1.05 -18.97 15 15 O -0.93 -19.00 16.80 -57.81 -0.97 -19.97 15 16 C -0.62 -10.78 6.16 37.18 0.23 -10.55 15 17 C 0.10 2.07 3.27 -26.92 -0.09 1.98 15 18 H 0.14 3.27 5.72 -51.93 -0.30 2.98 15 19 F -0.21 -4.94 14.58 2.25 0.03 -4.91 15 20 H 0.27 6.63 8.31 -40.82 -0.34 6.29 15 21 H 0.08 1.40 8.09 -51.93 -0.42 0.98 15 22 H 0.08 1.55 7.26 -51.93 -0.38 1.17 15 23 H 0.13 1.65 8.14 -51.93 -0.42 1.23 15 24 H 0.12 1.55 8.14 -51.93 -0.42 1.13 15 25 H 0.14 2.11 8.14 -51.93 -0.42 1.69 15 26 H 0.13 1.97 8.14 -51.93 -0.42 1.55 15 LS Contribution 230.68 15.07 3.48 3.48 Total: -1.00 -30.29 230.68 -6.52 -36.81 By element: Atomic # 1 Polarization: 4.51 SS G_CDS: -2.75 Total: 1.76 kcal Atomic # 6 Polarization: -30.74 SS G_CDS: -0.30 Total: -31.04 kcal Atomic # 7 Polarization: -23.19 SS G_CDS: 0.62 Total: -22.57 kcal Atomic # 8 Polarization: -36.92 SS G_CDS: -2.02 Total: -38.94 kcal Atomic # 9 Polarization: -4.94 SS G_CDS: 0.03 Total: -4.91 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.02 Total: 15.01 kcal Atomic # 16 Polarization: 40.97 SS G_CDS: -0.57 Total: 40.40 kcal Total LS contribution 3.48 Total: 3.48 kcal Total: -30.29 -6.52 -36.81 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260055613.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.930 kcal (2) G-P(sol) polarization free energy of solvation -30.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds