Wall clock time and date at job start Mon Mar 30 2020 03:02:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86808 * 120.00238 * 2 1 4 4 H 1.48500 * 109.46904 * 270.00391 * 3 2 1 5 5 H 1.48505 * 109.46773 * 29.99658 * 3 2 1 6 6 H 1.48497 * 109.47284 * 149.99840 * 3 2 1 7 7 C 1.37875 * 119.99965 * 179.97438 * 2 1 3 8 8 H 1.08009 * 120.00067 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00280 * 359.97438 * 7 2 1 10 10 H 1.09003 * 109.20531 * 60.57424 * 9 7 2 11 11 C 1.52586 * 109.24540 * 180.02562 * 9 7 2 12 12 C 1.53030 * 109.98404 * 190.28793 * 11 9 7 13 13 S 1.81671 * 108.99998 * 296.34881 * 12 11 9 14 14 O 1.42098 * 108.66352 * 168.62984 * 13 12 11 15 15 O 1.42097 * 108.66608 * 299.97065 * 13 12 11 16 16 C 1.81677 * 101.30649 * 54.30179 * 13 12 11 17 17 C 1.52589 * 109.23891 * 301.15862 * 9 7 2 18 18 H 1.09000 * 109.38633 * 49.55255 * 17 9 7 19 19 F 1.39902 * 109.38550 * 289.86605 * 17 9 7 20 20 H 0.97006 * 119.99876 * 0.02562 * 1 2 3 21 21 H 1.08997 * 109.38242 * 310.44539 * 11 9 7 22 22 H 1.08998 * 109.38408 * 70.23460 * 11 9 7 23 23 H 1.09001 * 109.55315 * 56.20514 * 12 11 9 24 24 H 1.09001 * 109.55093 * 176.39832 * 12 11 9 25 25 H 1.09001 * 109.54420 * 65.55664 * 16 13 12 26 26 H 1.09000 * 109.54994 * 185.75012 * 16 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0017 10 1 0.6334 -2.5575 -0.8946 11 6 2.2472 -3.6550 0.0027 12 6 1.5168 -4.9752 -0.2529 13 16 0.3643 -5.2882 1.1161 14 8 -0.4927 -6.3618 0.7525 15 8 1.1057 -5.3673 2.3257 16 6 -0.6028 -3.7503 1.1263 17 6 0.3546 -2.5611 1.2349 18 1 -0.2216 -1.6389 1.3101 19 9 1.1474 -2.7055 2.3786 20 1 -0.4850 0.8401 -0.0004 21 1 2.9886 -3.4942 -0.7799 22 1 2.7468 -3.7011 0.9704 23 1 0.9621 -4.9099 -1.1890 24 1 2.2415 -5.7871 -0.3143 25 1 -1.1764 -3.6740 0.2026 26 1 -1.2823 -3.7523 1.9786 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260055613.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:42 Heat of formation + Delta-G solvation = -151.126141 kcal Electronic energy + Delta-G solvation = -14246.970073 eV Core-core repulsion = 11559.213870 eV Total energy + Delta-G solvation = -2687.756203 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 222.051 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -48.33068 -38.08220 -37.46910 -37.00614 -34.29919 -32.17730 -29.59148 -25.67589 -24.28793 -21.41478 -19.70591 -18.74735 -17.93038 -17.37167 -16.82354 -16.66668 -16.05362 -15.80132 -15.51495 -14.78844 -14.03838 -13.83549 -13.74693 -13.49974 -13.13906 -12.99804 -12.86027 -12.63304 -12.48764 -12.36190 -11.92652 -11.61672 -11.39460 -11.07490 -10.67932 -10.48641 -8.19676 -6.31288 -0.84239 1.42418 1.46059 1.54436 1.77694 2.40561 2.70910 3.01462 3.14549 3.57694 3.84717 3.96806 4.09167 4.22215 4.49812 4.64271 4.77005 4.82923 5.01215 5.21784 5.51054 5.61160 5.87135 6.19041 6.74977 7.37574 8.84764 Molecular weight = 222.05amu Principal moments of inertia in cm(-1) A = 0.057834 B = 0.009924 C = 0.009700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 484.028187 B = 2820.829676 C = 2885.830014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.016 3.984 3 Si 0.953 3.047 4 H -0.272 1.272 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.528 4.528 8 H 0.061 0.939 9 C 0.000 4.000 10 H 0.053 0.947 11 C -0.103 4.103 12 C -0.581 4.581 13 S 2.427 3.573 14 O -0.977 6.977 15 O -0.970 6.970 16 C -0.624 4.624 17 C 0.089 3.911 18 H 0.109 0.891 19 F -0.225 7.225 20 H 0.267 0.733 21 H 0.092 0.908 22 H 0.066 0.934 23 H 0.157 0.843 24 H 0.157 0.843 25 H 0.164 0.836 26 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.114 -6.010 -1.945 6.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.183 4.183 3 Si 0.779 3.221 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.566 4.566 8 H 0.079 0.921 9 C -0.019 4.019 10 H 0.071 0.929 11 C -0.141 4.141 12 C -0.713 4.713 13 S 2.613 3.387 14 O -0.974 6.974 15 O -0.967 6.967 16 C -0.754 4.754 17 C 0.052 3.948 18 H 0.127 0.873 19 F -0.206 7.206 20 H 0.076 0.924 21 H 0.111 0.889 22 H 0.084 0.916 23 H 0.175 0.825 24 H 0.175 0.825 25 H 0.182 0.818 26 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -0.110 -6.659 -1.344 6.795 hybrid contribution 0.226 1.741 -0.261 1.775 sum 0.116 -4.918 -1.606 5.175 Atomic orbital electron populations 1.69804 1.06836 1.27854 1.50948 1.25671 0.95802 1.02381 0.94480 0.85609 0.78716 0.79410 0.78328 1.19756 1.21133 1.19719 1.21425 0.93627 0.91028 1.50510 0.92082 1.19431 0.94254 0.94488 0.93677 0.92867 1.21286 0.99228 0.90059 1.03518 1.30073 1.15557 1.07223 1.18403 1.07531 0.77320 0.76381 0.77476 1.93510 1.67151 1.51679 1.85074 1.93524 1.71886 1.86551 1.44786 1.30789 1.13310 1.17621 1.13677 1.21609 0.90817 0.98393 0.84003 0.87336 1.92743 1.77036 1.97010 1.53853 0.92385 0.88939 0.91559 0.82499 0.82531 0.81781 0.84060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -47.47 11.19 21.45 0.24 -47.23 15 2 C 0.02 0.80 5.26 84.65 0.45 1.25 15 3 Si 0.95 40.93 29.54 68.60 2.03 42.96 15 4 H -0.27 -11.29 7.11 99.48 0.71 -10.59 15 5 H -0.29 -12.21 7.11 99.48 0.71 -11.50 15 6 H -0.27 -11.63 7.11 99.48 0.71 -10.93 15 7 C -0.53 -26.36 8.45 25.60 0.22 -26.15 15 8 H 0.06 3.02 7.74 -2.91 -0.02 3.00 15 9 C 0.00 0.01 1.73 -11.81 -0.02 -0.01 15 10 H 0.05 2.26 8.09 -2.39 -0.02 2.24 15 11 C -0.10 -3.60 4.89 30.47 0.15 -3.45 15 12 C -0.58 -15.45 6.35 71.99 0.46 -15.00 15 13 S 2.43 77.18 5.26 -56.49 -0.30 76.89 15 14 O -0.98 -33.76 18.10 -127.39 -2.31 -36.06 15 15 O -0.97 -38.37 16.80 -127.39 -2.14 -40.51 15 16 C -0.62 -20.57 6.16 72.00 0.44 -20.12 15 17 C 0.09 3.85 3.27 30.47 0.10 3.95 15 18 H 0.11 5.30 5.72 -2.39 -0.01 5.28 15 19 F -0.23 -10.60 14.58 44.97 0.66 -9.95 15 20 H 0.27 13.28 8.31 -92.70 -0.77 12.51 15 21 H 0.09 3.01 8.09 -2.39 -0.02 2.99 15 22 H 0.07 2.50 7.26 -2.39 -0.02 2.49 15 23 H 0.16 3.34 8.14 -2.39 -0.02 3.32 15 24 H 0.16 3.22 8.14 -2.39 -0.02 3.20 15 25 H 0.16 4.55 8.14 -2.39 -0.02 4.53 15 26 H 0.14 4.19 8.14 -2.39 -0.02 4.18 15 Total: -1.00 -63.88 230.68 1.15 -62.73 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: 1.18 Total: 10.71 kcal Atomic # 6 Polarization: -61.32 SS G_CDS: 1.79 Total: -59.53 kcal Atomic # 7 Polarization: -47.47 SS G_CDS: 0.24 Total: -47.23 kcal Atomic # 8 Polarization: -72.13 SS G_CDS: -4.45 Total: -76.57 kcal Atomic # 9 Polarization: -10.60 SS G_CDS: 0.66 Total: -9.95 kcal Atomic # 14 Polarization: 40.93 SS G_CDS: 2.03 Total: 42.96 kcal Atomic # 16 Polarization: 77.18 SS G_CDS: -0.30 Total: 76.89 kcal Total: -63.88 1.15 -62.73 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260055613.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.398 kcal (2) G-P(sol) polarization free energy of solvation -63.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds