Wall clock time and date at job start Mon Mar 30 2020 03:02:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86809 * 119.99827 * 2 1 4 4 H 1.48498 * 109.46650 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47019 * 300.00021 * 3 2 1 6 6 H 1.48498 * 109.46894 * 59.99789 * 3 2 1 7 7 C 1.37875 * 120.00355 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00193 * 185.16344 * 7 2 1 9 9 C 1.50698 * 119.99647 * 5.16063 * 7 2 1 10 10 H 1.08999 * 109.21141 * 24.29716 * 9 7 2 11 11 C 1.52594 * 109.24153 * 264.87105 * 9 7 2 12 12 C 1.53037 * 109.90014 * 169.66389 * 11 9 7 13 13 S 1.81670 * 109.00133 * 63.70204 * 12 11 9 14 14 O 1.42097 * 108.66479 * 60.02754 * 13 12 11 15 15 O 1.42103 * 108.66565 * 191.37499 * 13 12 11 16 16 C 1.81677 * 101.30552 * 305.70126 * 13 12 11 17 17 C 1.52637 * 109.16976 * 143.79495 * 9 7 2 18 18 H 1.08989 * 109.46354 * 70.22239 * 17 9 7 19 19 F 1.39898 * 109.39338 * 310.48235 * 17 9 7 20 20 H 0.96999 * 120.00228 * 0.02562 * 1 2 3 21 21 H 1.08994 * 109.38501 * 49.55971 * 11 9 7 22 22 H 1.08996 * 109.38227 * 289.76680 * 11 9 7 23 23 H 1.08997 * 109.54876 * 183.55994 * 12 11 9 24 24 H 1.09006 * 109.55035 * 303.84600 * 12 11 9 25 25 H 1.09001 * 109.54951 * 174.15204 * 16 13 12 26 26 H 1.08996 * 109.54612 * 294.44123 * 16 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0813 -1.1958 0.0847 9 6 1.2557 -2.4965 -0.1163 10 1 0.2997 -2.3176 -0.6083 11 6 1.0054 -3.0595 1.2797 12 6 0.0318 -4.2376 1.1993 13 16 0.7980 -5.5735 0.2358 14 8 1.9960 -5.9742 0.8866 15 8 -0.1937 -6.5473 -0.0602 16 6 1.2331 -4.7022 -1.2978 17 6 2.0784 -3.4746 -0.9507 18 1 2.9551 -3.7875 -0.3839 19 9 2.4908 -2.8461 -2.1306 20 1 -0.4850 0.8400 -0.0004 21 1 0.5798 -2.2811 1.9128 22 1 1.9488 -3.3985 1.7076 23 1 -0.1921 -4.5949 2.2044 24 1 -0.8887 -3.9174 0.7111 25 1 1.8045 -5.3671 -1.9456 26 1 0.3235 -4.3862 -1.8084 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260055644.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:45 Heat of formation + Delta-G solvation = -134.550200 kcal Electronic energy + Delta-G solvation = -14002.523663 eV Core-core repulsion = 11315.486247 eV Total energy + Delta-G solvation = -2687.037416 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 222.051 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -46.69998 -36.90680 -35.98933 -35.74393 -32.40894 -30.80412 -27.96770 -23.94994 -22.69690 -20.10113 -18.55496 -16.84563 -16.62710 -16.07406 -15.46857 -14.96308 -14.69674 -14.21701 -14.00574 -13.21360 -12.61653 -12.50509 -12.23186 -11.94355 -11.85756 -11.74404 -11.09901 -11.01115 -10.83911 -10.50471 -10.41949 -10.27652 -9.86454 -9.24688 -9.19475 -8.63285 -6.24294 -4.28219 0.35285 2.95197 3.21374 3.30201 3.34999 3.90585 4.20455 4.33946 4.87284 4.94475 5.10668 5.21813 5.38908 5.61539 5.79273 5.89186 5.96443 6.26670 6.47968 6.68990 7.19856 7.39612 7.70901 8.04339 8.79240 9.38145 10.85869 Molecular weight = 222.05amu Principal moments of inertia in cm(-1) A = 0.049034 B = 0.009771 C = 0.009041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 570.892790 B = 2864.828310 C = 3096.355470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.067 3.933 3 Si 0.898 3.102 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.283 1.283 7 C -0.512 4.512 8 H 0.063 0.937 9 C -0.008 4.008 10 H 0.077 0.923 11 C -0.093 4.093 12 C -0.591 4.591 13 S 2.419 3.581 14 O -0.945 6.945 15 O -0.956 6.956 16 C -0.639 4.639 17 C 0.119 3.881 18 H 0.082 0.918 19 F -0.199 7.199 20 H 0.264 0.736 21 H 0.092 0.908 22 H 0.065 0.935 23 H 0.124 0.876 24 H 0.132 0.868 25 H 0.130 0.870 26 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.135 -6.288 0.510 6.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.136 4.136 3 Si 0.726 3.274 4 H -0.195 1.195 5 H -0.208 1.208 6 H -0.210 1.210 7 C -0.549 4.549 8 H 0.081 0.919 9 C -0.027 4.027 10 H 0.095 0.905 11 C -0.132 4.132 12 C -0.723 4.723 13 S 2.602 3.398 14 O -0.942 6.942 15 O -0.953 6.953 16 C -0.768 4.768 17 C 0.081 3.919 18 H 0.100 0.900 19 F -0.180 7.180 20 H 0.074 0.926 21 H 0.111 0.889 22 H 0.084 0.916 23 H 0.142 0.858 24 H 0.150 0.850 25 H 0.148 0.852 26 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 0.127 -7.059 0.687 7.093 hybrid contribution 0.131 1.687 -0.420 1.744 sum 0.259 -5.371 0.266 5.384 Atomic orbital electron populations 1.69914 1.06066 1.27149 1.49528 1.24968 0.94914 0.99586 0.94090 0.86431 0.80305 0.83048 0.77654 1.19463 1.20789 1.20958 1.20837 0.93491 0.89307 1.51305 0.91897 1.19644 0.98569 0.93762 0.90749 0.90484 1.21560 0.95710 0.94035 1.01931 1.30225 1.12306 1.16161 1.13611 1.07850 0.76018 0.77551 0.78339 1.93549 1.46513 1.80915 1.73234 1.93549 1.60512 1.56723 1.84541 1.30990 1.11621 1.11780 1.22429 1.21405 0.97159 0.89202 0.84109 0.90030 1.92778 1.91604 1.84132 1.49497 0.92612 0.88950 0.91628 0.85794 0.85004 0.85213 0.84322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.88 12.82 55.43 0.71 -23.16 15 2 C 0.07 1.76 5.45 -17.82 -0.10 1.66 15 3 Si 0.90 20.39 29.54 -169.99 -5.02 15.37 15 4 H -0.27 -6.08 7.11 56.52 0.40 -5.68 15 5 H -0.28 -6.43 7.11 56.52 0.40 -6.03 15 6 H -0.28 -6.37 7.11 56.52 0.40 -5.96 15 7 C -0.51 -12.99 7.70 -34.44 -0.27 -13.26 15 8 H 0.06 1.60 7.82 -52.49 -0.41 1.19 15 9 C -0.01 -0.18 1.81 -92.17 -0.17 -0.35 15 10 H 0.08 1.82 7.29 -51.93 -0.38 1.44 15 11 C -0.09 -1.76 5.01 -26.92 -0.13 -1.89 15 12 C -0.59 -8.89 6.34 37.18 0.24 -8.66 15 13 S 2.42 37.00 5.31 -107.50 -0.57 36.43 15 14 O -0.94 -16.86 17.94 -57.81 -1.04 -17.89 15 15 O -0.96 -16.62 18.10 -57.81 -1.05 -17.66 15 16 C -0.64 -9.88 6.08 37.18 0.23 -9.66 15 17 C 0.12 2.30 3.20 -26.90 -0.09 2.22 15 18 H 0.08 1.49 8.01 -51.94 -0.42 1.07 15 19 F -0.20 -4.38 16.48 2.25 0.04 -4.34 15 20 H 0.26 6.77 8.31 -40.82 -0.34 6.43 15 21 H 0.09 1.89 8.09 -51.93 -0.42 1.47 15 22 H 0.07 1.16 8.01 -51.93 -0.42 0.75 15 23 H 0.12 1.56 8.14 -51.93 -0.42 1.14 15 24 H 0.13 1.86 8.14 -51.92 -0.42 1.44 15 25 H 0.13 1.73 8.14 -51.93 -0.42 1.30 15 26 H 0.14 1.98 8.14 -51.93 -0.42 1.55 15 LS Contribution 237.21 15.07 3.57 3.57 Total: -1.00 -31.01 237.21 -6.51 -37.52 By element: Atomic # 1 Polarization: 2.97 SS G_CDS: -2.87 Total: 0.10 kcal Atomic # 6 Polarization: -29.65 SS G_CDS: -0.29 Total: -29.94 kcal Atomic # 7 Polarization: -23.88 SS G_CDS: 0.71 Total: -23.16 kcal Atomic # 8 Polarization: -33.47 SS G_CDS: -2.08 Total: -35.56 kcal Atomic # 9 Polarization: -4.38 SS G_CDS: 0.04 Total: -4.34 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Atomic # 16 Polarization: 37.00 SS G_CDS: -0.57 Total: 36.43 kcal Total LS contribution 3.57 Total: 3.57 kcal Total: -31.01 -6.51 -37.52 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260055644.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.030 kcal (2) G-P(sol) polarization free energy of solvation -31.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds