Wall clock time and date at job start Mon Mar 30 2020 03:02:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86809 * 119.99827 * 2 1 4 4 H 1.48498 * 109.46650 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47019 * 300.00021 * 3 2 1 6 6 H 1.48498 * 109.46894 * 59.99789 * 3 2 1 7 7 C 1.37875 * 120.00355 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00193 * 185.16344 * 7 2 1 9 9 C 1.50698 * 119.99647 * 5.16063 * 7 2 1 10 10 H 1.08999 * 109.21141 * 24.29716 * 9 7 2 11 11 C 1.52594 * 109.24153 * 264.87105 * 9 7 2 12 12 C 1.53037 * 109.90014 * 169.66389 * 11 9 7 13 13 S 1.81670 * 109.00133 * 63.70204 * 12 11 9 14 14 O 1.42097 * 108.66479 * 60.02754 * 13 12 11 15 15 O 1.42103 * 108.66565 * 191.37499 * 13 12 11 16 16 C 1.81677 * 101.30552 * 305.70126 * 13 12 11 17 17 C 1.52637 * 109.16976 * 143.79495 * 9 7 2 18 18 H 1.08989 * 109.46354 * 70.22239 * 17 9 7 19 19 F 1.39898 * 109.39338 * 310.48235 * 17 9 7 20 20 H 0.96999 * 120.00228 * 0.02562 * 1 2 3 21 21 H 1.08994 * 109.38501 * 49.55971 * 11 9 7 22 22 H 1.08996 * 109.38227 * 289.76680 * 11 9 7 23 23 H 1.08997 * 109.54876 * 183.55994 * 12 11 9 24 24 H 1.09006 * 109.55035 * 303.84600 * 12 11 9 25 25 H 1.09001 * 109.54951 * 174.15204 * 16 13 12 26 26 H 1.08996 * 109.54612 * 294.44123 * 16 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0813 -1.1958 0.0847 9 6 1.2557 -2.4965 -0.1163 10 1 0.2997 -2.3176 -0.6083 11 6 1.0054 -3.0595 1.2797 12 6 0.0318 -4.2376 1.1993 13 16 0.7980 -5.5735 0.2358 14 8 1.9960 -5.9742 0.8866 15 8 -0.1937 -6.5473 -0.0602 16 6 1.2331 -4.7022 -1.2978 17 6 2.0784 -3.4746 -0.9507 18 1 2.9551 -3.7875 -0.3839 19 9 2.4908 -2.8461 -2.1306 20 1 -0.4850 0.8400 -0.0004 21 1 0.5798 -2.2811 1.9128 22 1 1.9488 -3.3985 1.7076 23 1 -0.1921 -4.5949 2.2044 24 1 -0.8887 -3.9174 0.7111 25 1 1.8045 -5.3671 -1.9456 26 1 0.3235 -4.3862 -1.8084 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260055644.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:45 Heat of formation + Delta-G solvation = -156.590393 kcal Electronic energy + Delta-G solvation = -14003.479398 eV Core-core repulsion = 11315.486247 eV Total energy + Delta-G solvation = -2687.993150 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 222.051 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -48.35538 -38.30069 -37.51714 -37.09050 -34.27475 -32.15228 -29.60707 -25.71534 -24.12431 -21.69624 -19.85944 -18.68307 -18.03860 -17.42061 -16.86988 -16.63096 -16.27164 -15.77227 -15.59405 -14.72283 -13.99016 -13.97756 -13.80861 -13.63609 -13.22079 -13.09837 -12.89778 -12.65126 -12.39561 -12.19339 -11.96762 -11.79684 -11.34495 -11.05384 -10.81012 -10.56810 -8.20670 -6.28174 -0.90655 1.40309 1.44499 1.54549 1.71184 2.40604 2.66545 2.94750 3.10356 3.56963 3.69324 3.98258 4.02511 4.21197 4.34514 4.41487 4.62640 4.82403 5.04228 5.12164 5.51453 5.70427 5.74736 6.17665 6.84668 7.39640 8.89138 Molecular weight = 222.05amu Principal moments of inertia in cm(-1) A = 0.049034 B = 0.009771 C = 0.009041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 570.892790 B = 2864.828310 C = 3096.355470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.020 3.980 3 Si 0.950 3.050 4 H -0.268 1.268 5 H -0.283 1.283 6 H -0.278 1.278 7 C -0.526 4.526 8 H 0.055 0.945 9 C -0.016 4.016 10 H 0.056 0.944 11 C -0.090 4.090 12 C -0.587 4.587 13 S 2.454 3.546 14 O -0.966 6.966 15 O -0.970 6.970 16 C -0.636 4.636 17 C 0.111 3.889 18 H 0.093 0.907 19 F -0.217 7.217 20 H 0.264 0.736 21 H 0.071 0.929 22 H 0.075 0.925 23 H 0.154 0.846 24 H 0.143 0.857 25 H 0.156 0.844 26 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.212 -7.084 0.667 7.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.179 4.179 3 Si 0.776 3.224 4 H -0.193 1.193 5 H -0.209 1.209 6 H -0.204 1.204 7 C -0.564 4.564 8 H 0.073 0.927 9 C -0.035 4.035 10 H 0.074 0.926 11 C -0.129 4.129 12 C -0.718 4.718 13 S 2.638 3.362 14 O -0.964 6.964 15 O -0.967 6.967 16 C -0.764 4.764 17 C 0.074 3.926 18 H 0.111 0.889 19 F -0.198 7.198 20 H 0.073 0.927 21 H 0.090 0.910 22 H 0.094 0.906 23 H 0.172 0.828 24 H 0.161 0.839 25 H 0.174 0.826 26 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 0.215 -7.865 0.846 7.913 hybrid contribution 0.124 1.920 -0.474 1.982 sum 0.339 -5.944 0.373 5.966 Atomic orbital electron populations 1.69993 1.07004 1.27638 1.50934 1.25622 0.95654 1.02322 0.94349 0.85618 0.79251 0.79933 0.77562 1.19258 1.20927 1.20419 1.21208 0.93462 0.91205 1.50509 0.92674 1.19665 0.97511 0.93560 0.92730 0.92565 1.21303 0.97195 0.94920 0.99472 1.30171 1.11655 1.14275 1.15743 1.06868 0.74929 0.76835 0.77592 1.93519 1.47583 1.81485 1.73774 1.93533 1.60943 1.57515 1.84756 1.30939 1.11934 1.10246 1.23285 1.21456 0.97877 0.89931 0.83343 0.88892 1.92742 1.91862 1.84706 1.50443 0.92676 0.91014 0.90632 0.82796 0.83922 0.82628 0.83036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.63 12.82 21.45 0.27 -49.36 15 2 C 0.02 1.06 5.45 84.65 0.46 1.52 15 3 Si 0.95 41.92 29.54 68.60 2.03 43.94 15 4 H -0.27 -11.60 7.11 99.48 0.71 -10.90 15 5 H -0.28 -12.46 7.11 99.48 0.71 -11.75 15 6 H -0.28 -11.96 7.11 99.48 0.71 -11.25 15 7 C -0.53 -26.78 7.70 25.60 0.20 -26.58 15 8 H 0.05 2.81 7.82 -2.91 -0.02 2.79 15 9 C -0.02 -0.68 1.81 -11.80 -0.02 -0.70 15 10 H 0.06 2.66 7.29 -2.39 -0.02 2.64 15 11 C -0.09 -3.29 5.01 30.47 0.15 -3.13 15 12 C -0.59 -16.24 6.34 71.99 0.46 -15.78 15 13 S 2.45 68.57 5.31 -56.49 -0.30 68.27 15 14 O -0.97 -32.03 17.94 -127.40 -2.29 -34.31 15 15 O -0.97 -30.98 18.10 -127.40 -2.31 -33.28 15 16 C -0.64 -18.10 6.08 71.99 0.44 -17.67 15 17 C 0.11 4.17 3.20 30.49 0.10 4.27 15 18 H 0.09 3.25 8.01 -2.39 -0.02 3.23 15 19 F -0.22 -9.36 16.48 44.97 0.74 -8.62 15 20 H 0.26 13.65 8.31 -92.71 -0.77 12.88 15 21 H 0.07 2.92 8.09 -2.39 -0.02 2.90 15 22 H 0.08 2.57 8.01 -2.39 -0.02 2.55 15 23 H 0.15 3.37 8.14 -2.39 -0.02 3.35 15 24 H 0.14 3.71 8.14 -2.38 -0.02 3.69 15 25 H 0.16 3.65 8.14 -2.39 -0.02 3.63 15 26 H 0.15 3.96 8.14 -2.39 -0.02 3.94 15 Total: -1.00 -64.85 237.21 1.11 -63.74 By element: Atomic # 1 Polarization: 6.52 SS G_CDS: 1.17 Total: 7.69 kcal Atomic # 6 Polarization: -59.86 SS G_CDS: 1.78 Total: -58.08 kcal Atomic # 7 Polarization: -49.63 SS G_CDS: 0.27 Total: -49.36 kcal Atomic # 8 Polarization: -63.01 SS G_CDS: -4.59 Total: -67.60 kcal Atomic # 9 Polarization: -9.36 SS G_CDS: 0.74 Total: -8.62 kcal Atomic # 14 Polarization: 41.92 SS G_CDS: 2.03 Total: 43.94 kcal Atomic # 16 Polarization: 68.57 SS G_CDS: -0.30 Total: 68.27 kcal Total: -64.85 1.11 -63.74 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260055644.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.847 kcal (2) G-P(sol) polarization free energy of solvation -64.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds