Wall clock time and date at job start Mon Mar 30 2020 02:50:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30838 * 1 3 3 Si 1.86806 * 120.00050 * 2 1 4 4 H 1.48495 * 109.47325 * 270.00140 * 3 2 1 5 5 H 1.48506 * 109.46939 * 30.00534 * 3 2 1 6 6 H 1.48501 * 109.46783 * 149.99813 * 3 2 1 7 7 C 1.39972 * 119.99869 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99900 * 163.14680 * 7 2 1 9 9 C 1.40891 * 120.00051 * 343.14055 * 7 2 1 10 10 C 1.40539 * 120.31476 * 334.47225 * 9 7 2 11 11 C 1.38139 * 120.28099 * 179.97438 * 10 9 7 12 12 Cl 1.73594 * 119.59488 * 179.97438 * 11 10 9 13 13 C 1.38170 * 120.81657 * 359.97023 * 11 10 9 14 14 C 1.40342 * 120.26190 * 359.97438 * 13 11 10 15 15 C 1.41645 * 133.40291 * 179.97438 * 14 13 11 16 16 N 1.30233 * 108.50768 * 180.02562 * 15 14 13 17 17 N 1.40016 * 109.63838 * 359.97438 * 16 15 14 18 18 H 0.96996 * 125.90174 * 179.97438 * 17 16 15 19 19 C 1.36420 * 108.19959 * 0.22872 * 17 16 15 20 20 H 0.97006 * 120.00024 * 359.97438 * 1 2 3 21 21 H 1.07994 * 119.86175 * 359.96737 * 10 9 7 22 22 H 1.07994 * 119.87263 * 180.02562 * 13 11 10 23 23 H 1.07998 * 125.74201 * 359.97438 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2424 1.6178 0.0000 4 1 2.4899 2.0465 -1.4000 5 1 1.4399 2.6527 0.7002 6 1 3.5400 1.4401 0.7001 7 6 2.0082 -1.2122 -0.0005 8 1 3.0535 -1.2322 -0.2717 9 6 1.3492 -2.4063 0.3528 10 6 0.2209 -2.3728 1.1901 11 6 -0.4250 -3.5439 1.5357 12 17 -1.8166 -3.4819 2.5716 13 6 0.0227 -4.7641 1.0669 14 6 1.1459 -4.8306 0.2281 15 6 1.8307 -5.9005 -0.3986 16 7 2.8267 -5.4111 -1.0802 17 7 2.8515 -4.0179 -0.9427 18 1 3.4948 -3.4175 -1.3508 19 6 1.8180 -3.6514 -0.1312 20 1 -0.4850 0.8401 0.0004 21 1 -0.1425 -1.4275 1.5651 22 1 -0.4941 -5.6702 1.3464 23 1 1.5711 -6.9461 -0.3231 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260065197.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:25 Heat of formation + Delta-G solvation = 60.862307 kcal Electronic energy + Delta-G solvation = -12395.674020 eV Core-core repulsion = 10042.295501 eV Total energy + Delta-G solvation = -2353.378519 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 222.025 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.26282 -36.40376 -35.20960 -33.54425 -31.36213 -28.81347 -28.34344 -25.43881 -21.87436 -20.87124 -20.59325 -17.68312 -16.57470 -15.55067 -14.98052 -14.26857 -13.85886 -13.74457 -13.06541 -12.77332 -11.92068 -11.76581 -11.51587 -11.26748 -10.78569 -10.48963 -10.38744 -10.12710 -9.92475 -9.62747 -9.38610 -9.07117 -7.44781 -7.12178 -6.89987 -4.50658 2.05951 2.69397 2.90112 2.96494 3.00789 3.26961 3.52168 3.72773 3.76398 4.41180 5.30072 5.56743 5.84982 6.19676 6.43849 6.58207 6.80485 6.91994 7.06348 7.36124 7.56586 7.69928 7.86066 8.10116 8.30012 8.42646 8.57351 8.64234 9.95517 Molecular weight = 222.03amu Principal moments of inertia in cm(-1) A = 0.021865 B = 0.012926 C = 0.008315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.293337 B = 2165.581828 C = 3366.517981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.776 5.776 2 C 0.076 3.924 3 Si 0.911 3.089 4 H -0.268 1.268 5 H -0.273 1.273 6 H -0.259 1.259 7 C -0.454 4.454 8 H 0.078 0.922 9 C 0.118 3.882 10 C -0.175 4.175 11 C 0.002 3.998 12 Cl -0.121 7.121 13 C -0.189 4.189 14 C -0.140 4.140 15 C 0.043 3.957 16 N -0.282 5.282 17 N -0.494 5.494 18 H 0.433 0.567 19 C 0.066 3.934 20 H 0.286 0.714 21 H 0.135 0.865 22 H 0.105 0.895 23 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.772 -1.846 1.058 2.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.399 5.399 2 C -0.145 4.145 3 Si 0.735 3.265 4 H -0.194 1.194 5 H -0.197 1.197 6 H -0.183 1.183 7 C -0.483 4.483 8 H 0.096 0.904 9 C 0.113 3.887 10 C -0.198 4.198 11 C -0.025 4.025 12 Cl -0.093 7.093 13 C -0.212 4.212 14 C -0.148 4.148 15 C -0.150 4.150 16 N -0.100 5.100 17 N -0.209 5.209 18 H 0.276 0.724 19 C -0.051 4.051 20 H 0.097 0.903 21 H 0.152 0.848 22 H 0.123 0.877 23 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 1.421 -1.963 0.368 2.451 hybrid contribution -0.227 1.277 0.335 1.340 sum 1.194 -0.686 0.703 1.546 Atomic orbital electron populations 1.69799 1.07580 1.29889 1.32681 1.25888 0.94817 1.01432 0.92333 0.86250 0.80629 0.80266 0.79370 1.19360 1.19744 1.18324 1.19337 0.97531 0.91105 1.40278 0.90356 1.16561 0.92523 0.88619 0.91028 1.20789 0.99909 0.96134 1.02967 1.20400 0.89802 0.95251 0.97066 1.98255 1.44176 1.98963 1.67856 1.19556 0.99987 0.95228 1.06434 1.18425 0.99773 0.91919 1.04683 1.23576 0.94324 0.99149 0.97920 1.76426 1.21481 0.89858 1.22266 1.45535 1.27355 1.04051 1.43954 0.72408 1.19305 0.92350 0.95928 0.97536 0.90262 0.84767 0.87663 0.80614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.82 10.96 55.55 0.61 -18.21 14 2 C 0.08 1.76 5.15 -17.33 -0.09 1.67 14 3 Si 0.91 17.36 29.59 -169.99 -5.03 12.33 14 4 H -0.27 -5.06 7.11 56.52 0.40 -4.66 14 5 H -0.27 -5.12 7.11 56.52 0.40 -4.72 14 6 H -0.26 -4.92 7.11 56.52 0.40 -4.52 14 7 C -0.45 -11.01 9.04 -37.93 -0.34 -11.35 14 8 H 0.08 1.78 7.90 -52.48 -0.41 1.37 14 9 C 0.12 2.96 5.57 -106.75 -0.59 2.37 14 10 C -0.17 -4.34 8.44 -38.75 -0.33 -4.67 14 11 C 0.00 0.05 6.30 -39.64 -0.25 -0.20 14 12 Cl -0.12 -2.42 28.92 -51.86 -1.50 -3.92 14 13 C -0.19 -4.14 9.88 -38.82 -0.38 -4.52 14 14 C -0.14 -3.11 6.17 -106.99 -0.66 -3.77 14 15 C 0.04 0.84 12.06 -16.93 -0.20 0.64 14 16 N -0.28 -5.72 12.58 30.90 0.39 -5.33 14 17 N -0.49 -10.38 7.40 32.62 0.24 -10.14 14 18 H 0.43 7.97 8.96 -182.66 -1.64 6.33 14 19 C 0.07 1.56 7.05 -83.74 -0.59 0.97 14 20 H 0.29 6.31 8.30 -40.82 -0.34 5.97 14 21 H 0.13 3.46 6.18 -52.49 -0.32 3.13 14 22 H 0.11 2.04 8.06 -52.49 -0.42 1.62 14 23 H 0.18 2.65 8.06 -52.49 -0.42 2.22 14 LS Contribution 227.88 15.07 3.43 3.43 Total: -1.00 -26.31 227.88 -7.65 -33.97 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: -2.36 Total: 6.74 kcal Atomic # 6 Polarization: -15.44 SS G_CDS: -3.44 Total: -18.88 kcal Atomic # 7 Polarization: -34.91 SS G_CDS: 1.24 Total: -33.67 kcal Atomic # 14 Polarization: 17.36 SS G_CDS: -5.03 Total: 12.33 kcal Atomic # 17 Polarization: -2.42 SS G_CDS: -1.50 Total: -3.92 kcal Total LS contribution 3.43 Total: 3.43 kcal Total: -26.31 -7.65 -33.97 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260065197.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.828 kcal (2) G-P(sol) polarization free energy of solvation -26.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.965 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds