Wall clock time and date at job start Mon Mar 30 2020 02:46:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30882 * 1 3 3 Si 1.86795 * 120.00115 * 2 1 4 4 H 1.48504 * 109.47565 * 270.00411 * 3 2 1 5 5 H 1.48498 * 109.47288 * 30.00471 * 3 2 1 6 6 H 1.48502 * 109.47286 * 150.00233 * 3 2 1 7 7 C 1.39980 * 119.99726 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00220 * 180.02562 * 7 2 1 9 9 C 1.40231 * 120.00198 * 359.97438 * 7 2 1 10 10 C 1.36144 * 125.43427 * 180.02562 * 9 7 2 11 11 N 1.35818 * 115.69183 * 179.97438 * 10 9 7 12 12 C 1.35601 * 114.45220 * 0.02562 * 11 10 9 13 13 N 1.32969 * 121.08004 * 179.97438 * 12 11 10 14 14 C 1.32534 * 122.02121 * 359.97438 * 13 12 11 15 15 C 1.36740 * 119.65081 * 0.02562 * 14 13 12 16 16 C 1.36466 * 126.80008 * 179.97438 * 11 10 9 17 17 O 1.22048 * 120.19707 * 0.04982 * 16 11 10 18 18 S 1.75710 * 125.43340 * 359.97438 * 9 7 2 19 19 H 0.97007 * 119.99809 * 359.97438 * 1 2 3 20 20 H 1.07999 * 122.14934 * 359.97438 * 10 9 7 21 21 H 1.07998 * 120.17616 * 179.72493 * 14 13 12 22 22 H 1.08002 * 120.55645 * 179.97438 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 2.4903 2.0465 -1.4001 5 1 1.4404 2.6526 0.7001 6 1 3.5404 1.4401 0.7000 7 6 2.0087 -1.2123 -0.0005 8 1 3.0887 -1.2124 -0.0001 9 6 1.3075 -2.4267 -0.0005 10 6 1.8735 -3.6649 -0.0005 11 7 1.0051 -4.7093 0.0000 12 6 -0.3029 -4.3517 -0.0001 13 7 -1.2653 -5.2691 -0.0001 14 6 -0.9987 -6.5674 -0.0005 15 6 0.3015 -6.9909 -0.0005 16 6 1.3227 -6.0365 -0.0004 17 8 2.4915 -6.3880 -0.0004 18 16 -0.4417 -2.5931 0.0007 19 1 -0.4850 0.8401 0.0004 20 1 2.9440 -3.8075 -0.0010 21 1 -1.8039 -7.2870 0.0040 22 1 0.5355 -8.0453 -0.0004 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260071812.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:56 Heat of formation + Delta-G solvation = 5.363188 kcal Electronic energy + Delta-G solvation = -12379.028045 eV Core-core repulsion = 10025.286611 eV Total energy + Delta-G solvation = -2353.741435 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 222.020 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.92865 -36.52638 -36.04364 -34.45042 -30.59086 -29.70240 -26.35320 -24.67736 -22.60862 -20.68201 -18.41816 -17.40418 -16.72769 -16.41027 -15.38674 -15.16765 -14.54193 -13.63777 -13.35001 -12.66625 -12.50765 -12.41442 -11.89020 -11.88275 -11.32142 -11.22360 -10.77426 -10.19100 -9.98053 -9.14489 -9.08446 -8.74946 -8.37721 -7.56742 -6.72635 -5.04823 1.36694 2.13155 2.34590 2.69826 2.71502 2.79059 2.95609 3.09255 3.41951 3.72474 4.34749 4.65819 5.20785 5.52009 5.91121 6.38194 6.41883 6.58718 6.77019 6.89844 7.22479 7.53126 7.64422 7.74154 8.03012 8.66462 8.84788 9.36892 Molecular weight = 222.02amu Principal moments of inertia in cm(-1) A = 0.056154 B = 0.009102 C = 0.007854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 498.508576 B = 3075.402821 C = 3564.069728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.789 5.789 2 C 0.056 3.944 3 Si 0.949 3.051 4 H -0.261 1.261 5 H -0.269 1.269 6 H -0.254 1.254 7 C -0.376 4.376 8 H 0.109 0.891 9 C 0.016 3.984 10 C -0.209 4.209 11 N -0.375 5.375 12 C 0.192 3.808 13 N -0.547 5.547 14 C 0.170 3.830 15 C -0.365 4.365 16 C 0.499 3.501 17 O -0.578 6.578 18 S 0.272 5.728 19 H 0.309 0.691 20 H 0.160 0.840 21 H 0.154 0.846 22 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.537 2.923 -0.001 3.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.417 5.417 2 C -0.164 4.164 3 Si 0.771 3.229 4 H -0.185 1.185 5 H -0.193 1.193 6 H -0.178 1.178 7 C -0.410 4.410 8 H 0.127 0.873 9 C -0.105 4.105 10 C -0.335 4.335 11 N -0.074 5.074 12 C -0.168 4.168 13 N -0.276 5.276 14 C 0.012 3.988 15 C -0.396 4.396 16 C 0.306 3.694 17 O -0.462 6.462 18 S 0.521 5.479 19 H 0.124 0.876 20 H 0.177 0.823 21 H 0.171 0.829 22 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -3.814 3.965 0.006 5.501 hybrid contribution 2.233 -0.771 -0.007 2.362 sum -1.581 3.194 -0.001 3.564 Atomic orbital electron populations 1.68240 1.07834 1.31800 1.33825 1.26307 0.95150 1.03362 0.91620 0.85570 0.79999 0.77323 0.80020 1.18531 1.19336 1.17775 1.19140 0.96030 0.87394 1.38448 0.87340 1.21274 0.94799 0.95322 0.99062 1.20479 0.96075 0.83882 1.33069 1.44153 1.07287 1.09288 1.46692 1.28124 0.81835 1.05941 1.00896 1.68039 1.30377 1.01101 1.28067 1.22190 0.95519 0.91348 0.89785 1.21912 0.92731 0.99780 1.25216 1.17270 0.90917 0.80140 0.81073 1.90809 1.20670 1.78866 1.55820 1.86018 1.03910 0.82385 1.75578 0.87648 0.82278 0.82860 0.84471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -16.27 10.67 55.55 0.59 -15.68 14 2 C 0.06 1.12 5.50 -17.30 -0.10 1.03 14 3 Si 0.95 15.16 29.56 -169.99 -5.02 10.14 14 4 H -0.26 -4.15 7.11 56.52 0.40 -3.75 14 5 H -0.27 -4.19 7.11 56.52 0.40 -3.79 14 6 H -0.25 -4.06 7.11 56.52 0.40 -3.66 14 7 C -0.38 -8.29 9.29 -38.18 -0.35 -8.65 14 8 H 0.11 2.25 7.85 -52.49 -0.41 1.83 14 9 C 0.02 0.38 6.13 -39.59 -0.24 0.13 14 10 C -0.21 -5.17 10.48 -16.54 -0.17 -5.34 14 11 N -0.38 -9.40 2.79 -65.31 -0.18 -9.59 14 12 C 0.19 4.52 8.30 -87.77 -0.73 3.79 14 13 N -0.55 -12.01 10.42 -13.01 -0.14 -12.15 14 14 C 0.17 3.30 11.22 -17.79 -0.20 3.10 14 15 C -0.37 -7.83 10.00 -39.55 -0.40 -8.22 14 16 C 0.50 12.71 7.50 -14.91 -0.11 12.60 14 17 O -0.58 -16.15 17.41 4.87 0.08 -16.06 14 18 S 0.27 6.02 20.31 -107.50 -2.18 3.84 14 19 H 0.31 5.65 8.30 -40.82 -0.34 5.31 14 20 H 0.16 3.92 7.97 -52.49 -0.42 3.50 14 21 H 0.15 2.25 8.06 -52.49 -0.42 1.83 14 22 H 0.14 2.60 8.06 -52.49 -0.42 2.18 14 LS Contribution 221.12 15.07 3.33 3.33 Total: -1.00 -27.66 221.12 -6.63 -34.28 By element: Atomic # 1 Polarization: 4.26 SS G_CDS: -0.81 Total: 3.45 kcal Atomic # 6 Polarization: 0.74 SS G_CDS: -2.30 Total: -1.56 kcal Atomic # 7 Polarization: -37.69 SS G_CDS: 0.27 Total: -37.42 kcal Atomic # 8 Polarization: -16.15 SS G_CDS: 0.08 Total: -16.06 kcal Atomic # 14 Polarization: 15.16 SS G_CDS: -5.02 Total: 10.14 kcal Atomic # 16 Polarization: 6.02 SS G_CDS: -2.18 Total: 3.84 kcal Total LS contribution 3.33 Total: 3.33 kcal Total: -27.66 -6.63 -34.28 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260071812.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.646 kcal (2) G-P(sol) polarization free energy of solvation -27.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.282 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds