Wall clock time and date at job start Mon Mar 30 2020 02:46:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30882 * 1 3 3 Si 1.86795 * 120.00115 * 2 1 4 4 H 1.48504 * 109.47565 * 270.00411 * 3 2 1 5 5 H 1.48498 * 109.47288 * 30.00471 * 3 2 1 6 6 H 1.48502 * 109.47286 * 150.00233 * 3 2 1 7 7 C 1.39980 * 119.99726 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00220 * 180.02562 * 7 2 1 9 9 C 1.40231 * 120.00198 * 359.97438 * 7 2 1 10 10 C 1.36144 * 125.43427 * 180.02562 * 9 7 2 11 11 N 1.35818 * 115.69183 * 179.97438 * 10 9 7 12 12 C 1.35601 * 114.45220 * 0.02562 * 11 10 9 13 13 N 1.32969 * 121.08004 * 179.97438 * 12 11 10 14 14 C 1.32534 * 122.02121 * 359.97438 * 13 12 11 15 15 C 1.36740 * 119.65081 * 0.02562 * 14 13 12 16 16 C 1.36466 * 126.80008 * 179.97438 * 11 10 9 17 17 O 1.22048 * 120.19707 * 0.04982 * 16 11 10 18 18 S 1.75710 * 125.43340 * 359.97438 * 9 7 2 19 19 H 0.97007 * 119.99809 * 359.97438 * 1 2 3 20 20 H 1.07999 * 122.14934 * 359.97438 * 10 9 7 21 21 H 1.07998 * 120.17616 * 179.72493 * 14 13 12 22 22 H 1.08002 * 120.55645 * 179.97438 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 2.4903 2.0465 -1.4001 5 1 1.4404 2.6526 0.7001 6 1 3.5404 1.4401 0.7000 7 6 2.0087 -1.2123 -0.0005 8 1 3.0887 -1.2124 -0.0001 9 6 1.3075 -2.4267 -0.0005 10 6 1.8735 -3.6649 -0.0005 11 7 1.0051 -4.7093 0.0000 12 6 -0.3029 -4.3517 -0.0001 13 7 -1.2653 -5.2691 -0.0001 14 6 -0.9987 -6.5674 -0.0005 15 6 0.3015 -6.9909 -0.0005 16 6 1.3227 -6.0365 -0.0004 17 8 2.4915 -6.3880 -0.0004 18 16 -0.4417 -2.5931 0.0007 19 1 -0.4850 0.8401 0.0004 20 1 2.9440 -3.8075 -0.0010 21 1 -1.8039 -7.2870 0.0040 22 1 0.5355 -8.0453 -0.0004 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260071812.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:56 Heat of formation + Delta-G solvation = -11.109966 kcal Electronic energy + Delta-G solvation = -12379.742375 eV Core-core repulsion = 10025.286611 eV Total energy + Delta-G solvation = -2354.455764 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 222.020 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -42.73527 -38.43911 -37.76951 -36.14178 -32.36300 -31.47130 -28.10427 -26.43505 -24.37026 -22.44433 -20.18102 -19.17880 -18.51123 -18.09669 -17.25524 -16.78857 -16.21005 -15.37082 -14.84591 -14.43117 -14.31205 -14.17981 -13.51925 -13.45816 -12.96071 -12.89652 -12.03368 -11.78536 -11.71001 -11.04042 -10.84092 -10.49373 -10.14666 -9.18347 -8.49962 -6.84313 -0.34713 0.39188 0.58474 1.06957 1.13943 1.39802 1.58090 1.65951 1.88719 2.12378 2.66991 2.88373 3.62457 3.78065 4.30252 4.69900 4.77217 4.80251 5.00076 5.25380 5.50527 5.76748 5.90011 5.96280 6.30817 6.92868 6.97561 7.78745 Molecular weight = 222.02amu Principal moments of inertia in cm(-1) A = 0.056154 B = 0.009102 C = 0.007854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 498.508576 B = 3075.402821 C = 3564.069728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.797 5.797 2 C 0.027 3.973 3 Si 1.020 2.980 4 H -0.255 1.255 5 H -0.256 1.256 6 H -0.254 1.254 7 C -0.387 4.387 8 H 0.116 0.884 9 C 0.003 3.997 10 C -0.257 4.257 11 N -0.379 5.379 12 C 0.171 3.829 13 N -0.545 5.545 14 C 0.181 3.819 15 C -0.364 4.364 16 C 0.465 3.535 17 O -0.625 6.625 18 S 0.292 5.708 19 H 0.325 0.675 20 H 0.143 0.857 21 H 0.213 0.787 22 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.906 4.345 0.008 5.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.424 5.424 2 C -0.193 4.193 3 Si 0.838 3.162 4 H -0.179 1.179 5 H -0.179 1.179 6 H -0.178 1.178 7 C -0.420 4.420 8 H 0.133 0.867 9 C -0.118 4.118 10 C -0.382 4.382 11 N -0.077 5.077 12 C -0.188 4.188 13 N -0.274 5.274 14 C 0.023 3.977 15 C -0.394 4.394 16 C 0.275 3.725 17 O -0.514 6.514 18 S 0.541 5.459 19 H 0.141 0.859 20 H 0.160 0.840 21 H 0.229 0.771 22 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -5.237 5.366 0.014 7.498 hybrid contribution 2.539 -1.083 -0.010 2.761 sum -2.698 4.283 0.004 5.061 Atomic orbital electron populations 1.68185 1.08982 1.33764 1.31486 1.27274 0.95854 1.05947 0.90200 0.84550 0.78622 0.72810 0.80255 1.17936 1.17920 1.17789 1.19611 0.96824 0.87905 1.37684 0.86665 1.21548 0.96008 0.95425 0.98789 1.20338 0.95660 0.84653 1.37531 1.44174 1.07880 1.09281 1.46410 1.28528 0.81623 1.07029 1.01624 1.68149 1.29817 1.02078 1.27331 1.23007 0.96300 0.91154 0.87210 1.22214 0.92618 1.00185 1.24354 1.18055 0.91481 0.80868 0.82047 1.90756 1.22327 1.79479 1.58822 1.85690 1.02563 0.81768 1.75893 0.85942 0.83982 0.77097 0.82049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -31.26 10.67 21.84 0.23 -31.03 14 2 C 0.03 1.02 5.50 85.26 0.47 1.49 14 3 Si 1.02 28.65 29.56 68.60 2.03 30.67 14 4 H -0.26 -6.99 7.11 99.48 0.71 -6.29 14 5 H -0.26 -6.66 7.11 99.48 0.71 -5.95 14 6 H -0.25 -7.17 7.11 99.48 0.71 -6.46 14 7 C -0.39 -17.01 9.29 23.18 0.22 -16.79 14 8 H 0.12 4.79 7.85 -2.91 -0.02 4.77 14 9 C 0.00 0.14 6.13 22.27 0.14 0.28 14 10 C -0.26 -13.35 10.48 83.59 0.88 -12.47 14 11 N -0.38 -19.61 2.79 -477.64 -1.33 -20.94 14 12 C 0.17 8.08 8.30 179.35 1.49 9.56 14 13 N -0.54 -23.07 10.42 -195.07 -2.03 -25.10 14 14 C 0.18 6.56 11.22 84.24 0.95 7.51 14 15 C -0.36 -15.21 10.00 22.29 0.22 -14.98 14 16 C 0.47 24.37 7.50 84.34 0.63 25.00 14 17 O -0.63 -36.61 17.41 -5.47 -0.10 -36.71 14 18 S 0.29 12.90 20.31 -56.49 -1.15 11.76 14 19 H 0.33 10.96 8.30 -92.70 -0.77 10.19 14 20 H 0.14 7.60 7.97 -2.91 -0.02 7.58 14 21 H 0.21 5.10 8.06 -2.91 -0.02 5.08 14 22 H 0.16 5.82 8.06 -2.91 -0.02 5.80 14 Total: -1.00 -60.93 221.12 3.90 -57.04 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: 1.26 Total: 14.72 kcal Atomic # 6 Polarization: -5.39 SS G_CDS: 4.98 Total: -0.41 kcal Atomic # 7 Polarization: -73.94 SS G_CDS: -3.13 Total: -77.07 kcal Atomic # 8 Polarization: -36.61 SS G_CDS: -0.10 Total: -36.71 kcal Atomic # 14 Polarization: 28.65 SS G_CDS: 2.03 Total: 30.67 kcal Atomic # 16 Polarization: 12.90 SS G_CDS: -1.15 Total: 11.76 kcal Total: -60.93 3.90 -57.04 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260071812.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.928 kcal (2) G-P(sol) polarization free energy of solvation -60.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds