Wall clock time and date at job start Mon Mar 30 2020 02:46:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31073 * 1 3 3 Si 1.86806 * 120.00186 * 2 1 4 4 H 1.48500 * 109.47166 * 274.78380 * 3 2 1 5 5 H 1.48495 * 109.46617 * 34.78502 * 3 2 1 6 6 H 1.48499 * 109.47025 * 154.78448 * 3 2 1 7 7 C 1.39711 * 119.99885 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99874 * 165.39884 * 7 2 1 9 9 C 1.40798 * 119.99990 * 345.40345 * 7 2 1 10 10 C 1.36462 * 123.29946 * 338.44971 * 9 7 2 11 11 S 1.69978 * 111.94582 * 180.02562 * 10 9 7 12 12 C 1.75791 * 93.23112 * 359.97438 * 11 10 9 13 13 C 1.39863 * 130.18186 * 179.97438 * 12 11 10 14 14 C 1.37622 * 120.42558 * 180.02562 * 13 12 11 15 15 C 1.38626 * 120.21103 * 0.02562 * 14 13 12 16 16 C 1.37693 * 120.23462 * 359.97438 * 15 14 13 17 17 F 1.35104 * 119.86431 * 179.97438 * 16 15 14 18 18 C 1.39308 * 110.18315 * 0.02562 * 12 11 10 19 19 H 0.96999 * 119.99706 * 359.97438 * 1 2 3 20 20 H 1.08001 * 124.02280 * 0.02562 * 10 9 7 21 21 H 1.08002 * 119.79211 * 0.06240 * 13 12 11 22 22 H 1.07994 * 119.89632 * 180.28331 * 14 13 12 23 23 H 1.08006 * 119.87927 * 179.97438 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3107 0.0000 0.0000 3 14 2.2448 1.6178 0.0000 4 1 2.3912 2.1048 -1.3952 5 1 1.4965 2.6213 0.7987 6 1 3.5893 1.4130 0.5965 7 6 2.0093 -1.2099 -0.0005 8 1 3.0631 -1.2249 -0.2363 9 6 1.3393 -2.4097 0.3062 10 6 0.1704 -2.4566 1.0088 11 16 -0.3838 -4.0503 1.2142 12 6 0.9737 -4.7412 0.3368 13 6 1.2753 -6.0757 0.0462 14 6 2.4093 -6.3949 -0.6652 15 6 3.2645 -5.3945 -1.1005 16 6 2.9850 -4.0748 -0.8244 17 9 3.8239 -3.1058 -1.2518 18 6 1.8292 -3.7313 -0.0978 19 1 -0.4850 0.8401 0.0004 20 1 -0.3415 -1.5849 1.3890 21 1 0.6138 -6.8607 0.3818 22 1 2.6315 -7.4279 -0.8888 23 1 4.1532 -5.6511 -1.6580 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260150331.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:16 Heat of formation + Delta-G solvation = -18.603764 kcal Electronic energy + Delta-G solvation = -12410.350154 eV Core-core repulsion = 10035.649472 eV Total energy + Delta-G solvation = -2374.700682 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 222.021 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -48.03166 -38.33169 -35.01081 -32.34777 -29.72241 -28.18498 -26.00754 -22.65075 -21.70064 -19.69785 -17.57573 -16.69413 -15.58807 -15.30031 -14.79931 -14.70286 -14.37908 -13.59672 -12.97122 -12.46012 -12.33441 -11.69446 -11.43140 -11.38688 -10.95843 -10.80913 -10.38452 -10.19546 -9.96614 -9.43883 -9.17885 -8.39532 -7.52571 -6.77066 -6.65771 -4.30028 1.70004 1.79027 2.74046 2.97282 3.10174 3.16696 3.66409 3.75841 4.00343 4.31604 5.03378 5.26128 5.39156 5.52020 5.74484 6.06869 6.31666 6.68148 6.70408 6.84801 6.93124 7.19482 7.52283 7.70870 7.94305 8.46098 8.77062 8.87689 10.27331 Molecular weight = 222.02amu Principal moments of inertia in cm(-1) A = 0.032628 B = 0.011811 C = 0.008836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.962498 B = 2370.089175 C = 3168.252005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.797 5.797 2 C 0.070 3.930 3 Si 0.911 3.089 4 H -0.271 1.271 5 H -0.276 1.276 6 H -0.261 1.261 7 C -0.434 4.434 8 H 0.082 0.918 9 C 0.084 3.916 10 C -0.359 4.359 11 S 0.055 5.945 12 C -0.123 4.123 13 C -0.109 4.109 14 C -0.101 4.101 15 C -0.186 4.186 16 C 0.141 3.859 17 F -0.136 7.136 18 C -0.098 4.098 19 H 0.277 0.723 20 H 0.162 0.838 21 H 0.118 0.882 22 H 0.124 0.876 23 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.289 -6.528 -0.179 6.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.424 5.424 2 C -0.146 4.146 3 Si 0.736 3.264 4 H -0.196 1.196 5 H -0.201 1.201 6 H -0.185 1.185 7 C -0.466 4.466 8 H 0.100 0.900 9 C 0.075 3.925 10 C -0.495 4.495 11 S 0.319 5.681 12 C -0.239 4.239 13 C -0.132 4.132 14 C -0.122 4.122 15 C -0.209 4.209 16 C 0.120 3.880 17 F -0.114 7.114 18 C -0.110 4.110 19 H 0.088 0.912 20 H 0.179 0.821 21 H 0.136 0.864 22 H 0.142 0.858 23 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 0.798 -6.778 0.557 6.847 hybrid contribution 1.663 1.703 -0.881 2.538 sum 2.461 -5.075 -0.324 5.649 Atomic orbital electron populations 1.69878 1.07367 1.28665 1.36473 1.25801 0.94793 1.01103 0.92939 0.86238 0.80581 0.80612 0.78971 1.19638 1.20145 1.18475 1.19124 0.96964 0.90005 1.40550 0.89970 1.17253 0.92971 0.89282 0.92957 1.24263 1.08345 0.96941 1.19952 1.81858 1.24967 1.02061 1.59229 1.22575 1.00375 0.96109 1.04797 1.20387 0.98131 0.93423 1.01296 1.20522 0.94403 0.98225 0.99028 1.20676 1.02532 0.90977 1.06689 1.17562 0.88324 0.84946 0.97202 1.91440 1.69593 1.62782 1.87589 1.19744 0.94819 0.95590 1.00854 0.91181 0.82051 0.86379 0.85783 0.85641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.29 10.91 55.54 0.61 -20.69 14 2 C 0.07 1.82 5.31 -17.33 -0.09 1.73 14 3 Si 0.91 19.56 29.58 -169.99 -5.03 14.53 14 4 H -0.27 -5.73 7.11 56.52 0.40 -5.33 14 5 H -0.28 -5.75 7.11 56.52 0.40 -5.35 14 6 H -0.26 -5.56 7.11 56.52 0.40 -5.16 14 7 C -0.43 -11.98 8.79 -38.06 -0.33 -12.31 14 8 H 0.08 2.23 6.50 -52.49 -0.34 1.89 14 9 C 0.08 2.29 5.68 -106.19 -0.60 1.69 14 10 C -0.36 -9.48 9.51 30.09 0.29 -9.20 14 11 S 0.05 1.20 22.96 -107.50 -2.47 -1.27 14 12 C -0.12 -2.70 6.44 -38.58 -0.25 -2.95 14 13 C -0.11 -1.95 10.06 -39.20 -0.39 -2.35 14 14 C -0.10 -1.63 10.03 -39.66 -0.40 -2.03 14 15 C -0.19 -3.33 9.99 -39.64 -0.40 -3.73 14 16 C 0.14 3.12 7.34 -38.82 -0.29 2.83 14 17 F -0.14 -3.09 15.40 2.25 0.03 -3.06 14 18 C -0.10 -2.42 6.03 -105.16 -0.63 -3.06 14 19 H 0.28 6.75 8.30 -40.82 -0.34 6.41 14 20 H 0.16 4.49 6.34 -52.49 -0.33 4.15 14 21 H 0.12 1.77 8.06 -52.49 -0.42 1.35 14 22 H 0.12 1.51 8.06 -52.49 -0.42 1.09 14 23 H 0.13 1.86 8.06 -52.48 -0.42 1.44 14 LS Contribution 224.68 15.07 3.39 3.39 Total: -1.00 -28.34 224.68 -7.65 -35.98 By element: Atomic # 1 Polarization: 1.56 SS G_CDS: -1.08 Total: 0.49 kcal Atomic # 6 Polarization: -26.27 SS G_CDS: -3.10 Total: -29.37 kcal Atomic # 7 Polarization: -21.29 SS G_CDS: 0.61 Total: -20.69 kcal Atomic # 9 Polarization: -3.09 SS G_CDS: 0.03 Total: -3.06 kcal Atomic # 14 Polarization: 19.56 SS G_CDS: -5.03 Total: 14.53 kcal Atomic # 16 Polarization: 1.20 SS G_CDS: -2.47 Total: -1.27 kcal Total LS contribution 3.39 Total: 3.39 kcal Total: -28.34 -7.65 -35.98 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260150331.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.381 kcal (2) G-P(sol) polarization free energy of solvation -28.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds