Wall clock time and date at job start Mon Mar 30 2020 03:11:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30685 * 1 3 3 Si 1.86802 * 119.99958 * 2 1 4 4 H 1.48504 * 109.47013 * 270.27807 * 3 2 1 5 5 H 1.48504 * 109.47061 * 30.27033 * 3 2 1 6 6 H 1.48497 * 109.47163 * 150.27321 * 3 2 1 7 7 C 1.40309 * 120.00141 * 180.27544 * 2 1 3 8 8 H 1.07997 * 119.99990 * 179.72988 * 7 2 1 9 9 C 1.40069 * 119.99645 * 359.72050 * 7 2 1 10 10 C 1.35037 * 119.99906 * 175.28215 * 9 7 2 11 11 C 1.50709 * 119.99758 * 6.21920 * 10 9 7 12 12 C 1.50702 * 109.46451 * 126.08440 * 11 10 9 13 13 C 1.38265 * 119.99058 * 90.00637 * 12 11 10 14 14 C 1.38220 * 120.02680 * 179.97438 * 13 12 11 15 15 C 1.38239 * 120.01215 * 359.97438 * 14 13 12 16 16 C 1.38335 * 119.98485 * 359.97438 * 15 14 13 17 17 Cl 1.73596 * 120.01057 * 180.02562 * 16 15 14 18 18 C 1.38188 * 119.99374 * 269.72318 * 12 11 10 19 19 H 0.97001 * 120.00493 * 359.72551 * 1 2 3 20 20 H 1.07998 * 120.00385 * 355.28880 * 9 7 2 21 21 H 1.07998 * 120.00300 * 186.22569 * 10 9 7 22 22 H 1.08997 * 109.47023 * 246.08927 * 11 10 9 23 23 H 1.09001 * 109.46994 * 6.09141 * 11 10 9 24 24 H 1.08004 * 119.98718 * 359.96948 * 13 12 11 25 25 H 1.07995 * 119.99552 * 179.97438 * 14 13 12 26 26 H 1.08000 * 120.00717 * 179.97438 * 15 14 13 27 27 H 1.07998 * 120.00838 * 0.02562 * 18 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2409 1.6178 0.0000 4 1 2.4825 2.0498 -1.4001 5 1 1.4411 2.6510 0.7058 6 1 3.5413 1.4386 0.6942 7 6 2.0084 -1.2151 -0.0058 8 1 3.0884 -1.2150 -0.0103 9 6 1.3081 -2.4281 -0.0058 10 6 1.9794 -3.5953 -0.1075 11 6 3.4862 -3.6028 -0.0800 12 6 3.9642 -4.5501 0.9901 13 6 4.1937 -5.8790 0.6846 14 6 4.6326 -6.7483 1.6654 15 6 4.8430 -6.2896 2.9523 16 6 4.6146 -4.9600 3.2583 17 17 4.8792 -4.3830 4.8740 18 6 4.1787 -4.0893 2.2751 19 1 -0.4851 0.8400 0.0040 20 1 0.2311 -2.4299 0.0756 21 1 1.4365 -4.5235 -0.2088 22 1 3.8656 -3.9276 -1.0489 23 1 3.8506 -2.5983 0.1348 24 1 4.0298 -6.2378 -0.3209 25 1 4.8113 -7.7862 1.4263 26 1 5.1856 -6.9690 3.7187 27 1 4.0035 -3.0504 2.5126 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260165100.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:56 Heat of formation + Delta-G solvation = 8.144496 kcal Electronic energy + Delta-G solvation = -12045.208039 eV Core-core repulsion = 9793.083848 eV Total energy + Delta-G solvation = -2252.124191 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 222.051 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.93090 -36.21763 -34.72839 -32.80775 -30.39099 -30.23764 -26.42926 -24.21336 -22.23094 -21.02170 -18.74572 -16.78197 -16.03533 -15.13091 -14.99725 -14.77070 -13.57992 -13.27564 -13.19181 -12.69711 -12.49373 -11.62788 -11.52817 -11.31437 -11.07907 -10.98047 -10.77609 -10.61730 -10.20028 -9.81131 -9.49445 -9.15883 -8.43002 -8.09884 -7.63056 -6.76209 -4.28176 1.57136 1.73162 2.43477 2.95035 3.08745 3.13426 3.85239 3.97209 4.11604 5.14758 5.24040 5.40505 5.57099 5.75256 5.84931 6.02203 6.37322 6.49892 6.63007 6.72423 6.81862 7.07122 7.17030 7.20623 7.32210 7.57476 7.82597 8.37835 8.67030 9.09442 9.24215 10.27348 Molecular weight = 222.05amu Principal moments of inertia in cm(-1) A = 0.029916 B = 0.006981 C = 0.006081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.718336 B = 4009.802974 C = 4603.392012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.820 5.820 2 C 0.073 3.927 3 Si 0.908 3.092 4 H -0.269 1.269 5 H -0.278 1.278 6 H -0.261 1.261 7 C -0.464 4.464 8 H 0.077 0.923 9 C 0.057 3.943 10 C -0.423 4.423 11 C -0.012 4.012 12 C -0.029 4.029 13 C -0.125 4.125 14 C -0.111 4.111 15 C -0.138 4.138 16 C -0.031 4.031 17 Cl -0.088 7.088 18 C -0.108 4.108 19 H 0.281 0.719 20 H 0.080 0.920 21 H 0.065 0.935 22 H 0.040 0.960 23 H 0.075 0.925 24 H 0.122 0.878 25 H 0.123 0.877 26 H 0.123 0.877 27 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.970 -6.669 4.206 11.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C -0.143 4.143 3 Si 0.733 3.267 4 H -0.194 1.194 5 H -0.203 1.203 6 H -0.185 1.185 7 C -0.494 4.494 8 H 0.095 0.905 9 C 0.036 3.964 10 C -0.445 4.445 11 C -0.048 4.048 12 C -0.029 4.029 13 C -0.144 4.144 14 C -0.129 4.129 15 C -0.157 4.157 16 C -0.057 4.057 17 Cl -0.059 7.059 18 C -0.127 4.127 19 H 0.091 0.909 20 H 0.098 0.902 21 H 0.084 0.916 22 H 0.058 0.942 23 H 0.093 0.907 24 H 0.140 0.860 25 H 0.141 0.859 26 H 0.141 0.859 27 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 7.776 -6.445 4.354 10.998 hybrid contribution 0.181 0.768 0.244 0.825 sum 7.957 -5.677 4.597 10.802 Atomic orbital electron populations 1.69569 1.07736 1.29473 1.37895 1.26138 0.94769 1.01757 0.91664 0.86309 0.80499 0.80648 0.79227 1.19406 1.20301 1.18470 1.19728 0.94820 0.90714 1.44126 0.90494 1.19883 0.96586 0.92070 0.87820 1.21675 0.91396 0.96039 1.35346 1.19225 0.96413 0.96507 0.92676 1.20502 0.92272 0.94986 0.95147 1.21177 1.00226 0.93404 0.99553 1.20993 0.99954 0.99451 0.92527 1.20819 1.03848 0.93691 0.97350 1.20926 1.04647 0.94498 0.85653 1.98333 1.95244 1.89342 1.23012 1.21050 0.99592 1.00154 0.91898 0.90889 0.90212 0.91640 0.94169 0.90685 0.85970 0.85941 0.85924 0.84942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -21.76 12.87 55.57 0.72 -21.05 15 2 C 0.07 1.88 5.50 -17.26 -0.09 1.78 15 3 Si 0.91 19.07 29.56 -169.99 -5.03 14.04 15 4 H -0.27 -5.55 7.11 56.52 0.40 -5.15 15 5 H -0.28 -5.70 7.11 56.52 0.40 -5.30 15 6 H -0.26 -5.40 7.11 56.52 0.40 -5.00 15 7 C -0.46 -12.34 8.64 -38.12 -0.33 -12.67 15 8 H 0.08 1.97 5.51 -52.49 -0.29 1.68 15 9 C 0.06 1.52 9.38 -40.03 -0.38 1.15 15 10 C -0.42 -10.41 9.66 -35.44 -0.34 -10.75 15 11 C -0.01 -0.25 5.59 -29.03 -0.16 -0.41 15 12 C -0.03 -0.55 5.11 -104.63 -0.54 -1.08 15 13 C -0.13 -2.06 9.70 -39.58 -0.38 -2.44 15 14 C -0.11 -1.59 10.05 -39.59 -0.40 -1.98 15 15 C -0.14 -2.03 9.83 -39.55 -0.39 -2.42 15 16 C -0.03 -0.51 6.32 -39.50 -0.25 -0.76 15 17 Cl -0.09 -1.32 28.96 -51.86 -1.50 -2.83 15 18 C -0.11 -2.01 9.49 -39.55 -0.38 -2.39 15 19 H 0.28 6.77 8.29 -40.82 -0.34 6.44 15 20 H 0.08 2.26 7.43 -52.49 -0.39 1.87 15 21 H 0.07 1.60 8.06 -52.49 -0.42 1.18 15 22 H 0.04 0.81 8.09 -51.93 -0.42 0.39 15 23 H 0.07 1.67 5.32 -51.93 -0.28 1.39 15 24 H 0.12 1.82 8.06 -52.48 -0.42 1.40 15 25 H 0.12 1.36 8.06 -52.49 -0.42 0.94 15 26 H 0.12 1.50 8.06 -52.49 -0.42 1.08 15 27 H 0.13 2.55 8.06 -52.49 -0.42 2.12 15 LS Contribution 256.90 15.07 3.87 3.87 Total: -1.00 -26.70 256.90 -8.20 -34.90 By element: Atomic # 1 Polarization: 5.66 SS G_CDS: -2.62 Total: 3.03 kcal Atomic # 6 Polarization: -28.34 SS G_CDS: -3.63 Total: -31.97 kcal Atomic # 7 Polarization: -21.76 SS G_CDS: 0.72 Total: -21.05 kcal Atomic # 14 Polarization: 19.07 SS G_CDS: -5.03 Total: 14.04 kcal Atomic # 17 Polarization: -1.32 SS G_CDS: -1.50 Total: -2.83 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -26.70 -8.20 -34.90 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260165100.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.045 kcal (2) G-P(sol) polarization free energy of solvation -26.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.900 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds