Wall clock time and date at job start Mon Mar 30 2020 03:11:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30685 * 1 3 3 Si 1.86802 * 119.99958 * 2 1 4 4 H 1.48504 * 109.47013 * 270.27807 * 3 2 1 5 5 H 1.48504 * 109.47061 * 30.27033 * 3 2 1 6 6 H 1.48497 * 109.47163 * 150.27321 * 3 2 1 7 7 C 1.40309 * 120.00141 * 180.27544 * 2 1 3 8 8 H 1.07997 * 119.99990 * 179.72988 * 7 2 1 9 9 C 1.40069 * 119.99645 * 359.72050 * 7 2 1 10 10 C 1.35037 * 119.99906 * 175.28215 * 9 7 2 11 11 C 1.50709 * 119.99758 * 6.21920 * 10 9 7 12 12 C 1.50702 * 109.46451 * 126.08440 * 11 10 9 13 13 C 1.38265 * 119.99058 * 90.00637 * 12 11 10 14 14 C 1.38220 * 120.02680 * 179.97438 * 13 12 11 15 15 C 1.38239 * 120.01215 * 359.97438 * 14 13 12 16 16 C 1.38335 * 119.98485 * 359.97438 * 15 14 13 17 17 Cl 1.73596 * 120.01057 * 180.02562 * 16 15 14 18 18 C 1.38188 * 119.99374 * 269.72318 * 12 11 10 19 19 H 0.97001 * 120.00493 * 359.72551 * 1 2 3 20 20 H 1.07998 * 120.00385 * 355.28880 * 9 7 2 21 21 H 1.07998 * 120.00300 * 186.22569 * 10 9 7 22 22 H 1.08997 * 109.47023 * 246.08927 * 11 10 9 23 23 H 1.09001 * 109.46994 * 6.09141 * 11 10 9 24 24 H 1.08004 * 119.98718 * 359.96948 * 13 12 11 25 25 H 1.07995 * 119.99552 * 179.97438 * 14 13 12 26 26 H 1.08000 * 120.00717 * 179.97438 * 15 14 13 27 27 H 1.07998 * 120.00838 * 0.02562 * 18 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2409 1.6178 0.0000 4 1 2.4825 2.0498 -1.4001 5 1 1.4411 2.6510 0.7058 6 1 3.5413 1.4386 0.6942 7 6 2.0084 -1.2151 -0.0058 8 1 3.0884 -1.2150 -0.0103 9 6 1.3081 -2.4281 -0.0058 10 6 1.9794 -3.5953 -0.1075 11 6 3.4862 -3.6028 -0.0800 12 6 3.9642 -4.5501 0.9901 13 6 4.1937 -5.8790 0.6846 14 6 4.6326 -6.7483 1.6654 15 6 4.8430 -6.2896 2.9523 16 6 4.6146 -4.9600 3.2583 17 17 4.8792 -4.3830 4.8740 18 6 4.1787 -4.0893 2.2751 19 1 -0.4851 0.8400 0.0040 20 1 0.2311 -2.4299 0.0756 21 1 1.4365 -4.5235 -0.2088 22 1 3.8656 -3.9276 -1.0489 23 1 3.8506 -2.5983 0.1348 24 1 4.0298 -6.2378 -0.3209 25 1 4.8113 -7.7862 1.4263 26 1 5.1856 -6.9690 3.7187 27 1 4.0035 -3.0504 2.5126 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260165100.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:55 Heat of formation + Delta-G solvation = -4.171172 kcal Electronic energy + Delta-G solvation = -12045.742086 eV Core-core repulsion = 9793.083848 eV Total energy + Delta-G solvation = -2252.658239 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 222.051 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.23821 -37.48499 -36.59801 -34.55370 -31.99231 -31.57414 -28.16786 -26.07104 -23.49964 -22.43267 -20.69878 -18.48558 -17.57825 -16.68604 -16.36623 -16.31604 -15.28699 -14.80412 -14.52072 -14.28897 -13.94002 -13.42365 -13.09080 -12.93450 -12.50926 -12.36404 -12.27262 -12.04206 -11.82849 -11.53678 -11.37439 -11.06307 -9.74158 -9.65659 -9.46975 -8.69556 -6.30902 0.29059 0.44284 1.18650 1.24931 1.37105 1.51021 1.95573 2.20996 2.79378 3.38992 3.95725 4.03826 4.27438 4.46244 4.51769 4.63799 4.84361 5.04405 5.08691 5.17934 5.30118 5.35746 5.48037 5.51427 5.79186 5.84575 6.00929 6.35752 6.64379 7.06350 7.19164 8.36805 Molecular weight = 222.05amu Principal moments of inertia in cm(-1) A = 0.029916 B = 0.006981 C = 0.006081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.718336 B = 4009.802974 C = 4603.392012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.857 5.857 2 C 0.027 3.973 3 Si 0.983 3.017 4 H -0.259 1.259 5 H -0.268 1.268 6 H -0.257 1.257 7 C -0.489 4.489 8 H 0.081 0.919 9 C 0.025 3.975 10 C -0.409 4.409 11 C -0.007 4.007 12 C -0.055 4.055 13 C -0.128 4.128 14 C -0.098 4.098 15 C -0.129 4.129 16 C -0.040 4.040 17 Cl -0.078 7.078 18 C -0.129 4.129 19 H 0.289 0.711 20 H 0.053 0.947 21 H 0.064 0.936 22 H 0.054 0.946 23 H 0.059 0.941 24 H 0.137 0.863 25 H 0.165 0.835 26 H 0.155 0.845 27 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.695 -7.772 4.639 13.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.485 5.485 2 C -0.186 4.186 3 Si 0.803 3.197 4 H -0.184 1.184 5 H -0.192 1.192 6 H -0.180 1.180 7 C -0.519 4.519 8 H 0.099 0.901 9 C 0.005 3.995 10 C -0.431 4.431 11 C -0.043 4.043 12 C -0.055 4.055 13 C -0.146 4.146 14 C -0.116 4.116 15 C -0.147 4.147 16 C -0.066 4.066 17 Cl -0.050 7.050 18 C -0.148 4.148 19 H 0.099 0.901 20 H 0.071 0.929 21 H 0.082 0.918 22 H 0.072 0.928 23 H 0.077 0.923 24 H 0.155 0.845 25 H 0.183 0.817 26 H 0.172 0.828 27 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 9.496 -7.565 4.787 13.051 hybrid contribution -0.356 0.930 0.151 1.008 sum 9.140 -6.635 4.937 12.326 Atomic orbital electron populations 1.69639 1.09303 1.30964 1.38566 1.27060 0.95591 1.05296 0.90686 0.85186 0.79025 0.75751 0.79693 1.18366 1.19220 1.18047 1.19922 0.95132 0.91374 1.45487 0.90072 1.19910 0.95478 0.93648 0.90509 1.21948 0.93586 0.95014 1.32513 1.19081 0.93957 0.96787 0.94506 1.20267 0.94860 0.95883 0.94496 1.21403 0.99750 0.92404 1.01063 1.21435 0.97687 1.00991 0.91516 1.21260 1.01975 0.93048 0.98419 1.21038 1.04667 0.95174 0.85770 1.98334 1.95144 1.89453 1.22026 1.20963 1.01284 0.99817 0.92736 0.90057 0.92915 0.91817 0.92791 0.92265 0.84472 0.81732 0.82780 0.86988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -46.75 12.87 21.89 0.28 -46.47 15 2 C 0.03 1.39 5.50 85.37 0.47 1.86 15 3 Si 0.98 39.28 29.56 68.60 2.03 41.30 15 4 H -0.26 -9.90 7.11 99.48 0.71 -9.19 15 5 H -0.27 -10.17 7.11 99.48 0.71 -9.46 15 6 H -0.26 -9.99 7.11 99.48 0.71 -9.29 15 7 C -0.49 -26.92 8.64 23.22 0.20 -26.72 15 8 H 0.08 4.29 5.51 -2.91 -0.02 4.27 15 9 C 0.02 1.40 9.38 21.98 0.21 1.60 15 10 C -0.41 -20.67 9.66 24.95 0.24 -20.43 15 11 C -0.01 -0.28 5.59 29.11 0.16 -0.12 15 12 C -0.05 -2.05 5.11 -19.87 -0.10 -2.16 15 13 C -0.13 -3.89 9.70 22.27 0.22 -3.67 15 14 C -0.10 -2.40 10.05 22.27 0.22 -2.18 15 15 C -0.13 -3.30 9.83 22.29 0.22 -3.08 15 16 C -0.04 -1.26 6.32 22.33 0.14 -1.12 15 17 Cl -0.08 -2.24 28.96 -2.72 -0.08 -2.32 15 18 C -0.13 -4.81 9.49 22.29 0.21 -4.60 15 19 H 0.29 14.20 8.29 -92.71 -0.77 13.43 15 20 H 0.05 3.18 7.43 -2.91 -0.02 3.15 15 21 H 0.06 3.17 8.06 -2.91 -0.02 3.15 15 22 H 0.05 2.15 8.09 -2.39 -0.02 2.13 15 23 H 0.06 2.72 5.32 -2.39 -0.01 2.71 15 24 H 0.14 3.69 8.06 -2.91 -0.02 3.66 15 25 H 0.17 2.67 8.06 -2.91 -0.02 2.65 15 26 H 0.15 3.00 8.06 -2.91 -0.02 2.98 15 27 H 0.11 4.51 8.06 -2.91 -0.02 4.48 15 Total: -1.00 -59.01 256.90 5.59 -53.43 By element: Atomic # 1 Polarization: 13.51 SS G_CDS: 1.17 Total: 14.67 kcal Atomic # 6 Polarization: -62.80 SS G_CDS: 2.19 Total: -60.61 kcal Atomic # 7 Polarization: -46.75 SS G_CDS: 0.28 Total: -46.47 kcal Atomic # 14 Polarization: 39.28 SS G_CDS: 2.03 Total: 41.30 kcal Atomic # 17 Polarization: -2.24 SS G_CDS: -0.08 Total: -2.32 kcal Total: -59.01 5.59 -53.43 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260165100.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.257 kcal (2) G-P(sol) polarization free energy of solvation -59.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds