Wall clock time and date at job start Mon Mar 30 2020 02:48:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31384 * 1 3 3 Si 1.86797 * 120.00102 * 2 1 4 4 H 1.48496 * 109.46949 * 270.00164 * 3 2 1 5 5 H 1.48503 * 109.47139 * 30.00290 * 3 2 1 6 6 H 1.48501 * 109.46931 * 149.99960 * 3 2 1 7 7 C 1.38908 * 120.00124 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00262 * 190.21292 * 7 2 1 9 9 N 1.37316 * 119.99932 * 10.20902 * 7 2 1 10 10 C 1.36553 * 126.39868 * 18.76010 * 9 7 2 11 11 N 1.30081 * 110.04015 * 179.97438 * 10 9 7 12 12 C 1.35919 * 109.73742 * 0.02562 * 11 10 9 13 13 C 1.39680 * 133.48370 * 179.97438 * 12 11 10 14 14 C 1.37699 * 119.79421 * 180.02562 * 13 12 11 15 15 C 1.38828 * 120.50759 * 359.97438 * 14 13 12 16 16 Cl 1.73600 * 119.79694 * 180.02562 * 15 14 13 17 17 C 1.38079 * 120.40682 * 0.28726 * 15 14 13 18 18 C 1.38394 * 126.40100 * 198.71852 * 9 7 2 19 19 H 0.96992 * 120.00137 * 359.97438 * 1 2 3 20 20 H 1.08005 * 124.98179 * 359.97438 * 10 9 7 21 21 H 1.08001 * 120.09998 * 359.97438 * 13 12 11 22 22 H 1.07999 * 119.74569 * 180.02562 * 14 13 12 23 23 H 1.07996 * 120.08663 * 179.65409 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3138 0.0000 0.0000 3 14 2.2478 1.6177 0.0000 4 1 2.4953 2.0463 -1.4000 5 1 1.4453 2.6526 0.7001 6 1 3.5454 1.4401 0.7001 7 6 2.0084 -1.2030 -0.0005 8 1 3.0755 -1.2105 0.1653 9 7 1.3381 -2.3827 -0.2118 10 6 0.1027 -2.5228 -0.7764 11 7 -0.2263 -3.7805 -0.8223 12 6 0.7713 -4.5356 -0.2915 13 6 0.9374 -5.9086 -0.0957 14 6 2.0926 -6.3822 0.4850 15 6 3.0948 -5.5053 0.8774 16 17 4.5441 -6.1224 1.6072 17 6 2.9437 -4.1448 0.6958 18 6 1.7888 -3.6518 0.1068 19 1 -0.4850 0.8400 0.0004 20 1 -0.5113 -1.7087 -1.1326 21 1 0.1617 -6.5966 -0.3982 22 1 2.2204 -7.4439 0.6357 23 1 3.7243 -3.4669 1.0081 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260244630.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:59 Heat of formation + Delta-G solvation = 52.608375 kcal Electronic energy + Delta-G solvation = -12353.697343 eV Core-core repulsion = 9999.960907 eV Total energy + Delta-G solvation = -2353.736436 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 222.025 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.87232 -36.90176 -35.45511 -33.99173 -31.78883 -29.29490 -28.04727 -25.51426 -22.24677 -21.16263 -20.52473 -17.99957 -16.46341 -15.46986 -15.27216 -14.77367 -14.16011 -13.57828 -13.23049 -12.61189 -12.33943 -12.05167 -11.83246 -11.44735 -11.33250 -10.93462 -10.67016 -10.40639 -10.35860 -9.81085 -9.14116 -8.81333 -7.59661 -7.19498 -6.98209 -4.64083 1.77650 2.29046 2.73649 2.88173 2.91855 2.96698 3.62695 3.87803 4.57266 4.67825 4.73743 5.38141 5.60304 5.89699 6.21010 6.25868 6.42570 6.67139 6.78636 6.87775 7.00565 7.14077 7.41068 7.77796 8.05966 8.40101 9.05260 9.25402 10.01888 Molecular weight = 222.03amu Principal moments of inertia in cm(-1) A = 0.035088 B = 0.009057 C = 0.007282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.807992 B = 3090.699688 C = 3844.376751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.846 5.846 2 C 0.044 3.956 3 Si 0.949 3.051 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.263 1.263 7 C -0.335 4.335 8 H 0.112 0.888 9 N -0.293 5.293 10 C 0.245 3.755 11 N -0.545 5.545 12 C 0.038 3.962 13 C -0.065 4.065 14 C -0.140 4.140 15 C -0.056 4.056 16 Cl -0.099 7.099 17 C -0.070 4.070 18 C 0.001 3.999 19 H 0.287 0.713 20 H 0.216 0.784 21 H 0.122 0.878 22 H 0.122 0.878 23 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.358 -3.349 0.744 5.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.478 5.478 2 C -0.166 4.166 3 Si 0.773 3.227 4 H -0.193 1.193 5 H -0.199 1.199 6 H -0.187 1.187 7 C -0.464 4.464 8 H 0.129 0.871 9 N 0.038 4.962 10 C -0.036 4.036 11 N -0.266 5.266 12 C -0.088 4.088 13 C -0.085 4.085 14 C -0.162 4.162 15 C -0.085 4.085 16 Cl -0.070 7.070 17 C -0.091 4.091 18 C -0.116 4.116 19 H 0.098 0.902 20 H 0.232 0.768 21 H 0.140 0.860 22 H 0.140 0.860 23 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 3.591 -3.312 0.498 4.911 hybrid contribution 1.182 1.212 0.508 1.768 sum 4.773 -2.100 1.006 5.311 Atomic orbital electron populations 1.69752 1.06451 1.29811 1.41752 1.25603 0.95843 1.00911 0.94196 0.85558 0.79263 0.78648 0.79251 1.19254 1.19935 1.18712 1.19965 0.94098 0.81450 1.50866 0.87073 1.41672 1.13927 1.03686 1.36904 1.25649 0.86702 0.94374 0.96918 1.70455 1.27811 1.01895 1.26461 1.19034 0.92104 0.93675 1.04024 1.19894 0.96783 0.92083 0.99730 1.20345 0.93482 0.98430 1.03931 1.20067 0.89342 0.92663 1.06474 1.98287 1.38373 1.87824 1.82543 1.19521 0.96170 0.92947 1.00422 1.18685 0.98033 0.86921 1.07925 0.90248 0.76825 0.86025 0.86017 0.86327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -20.54 10.83 55.49 0.60 -19.94 14 2 C 0.04 1.04 5.38 -17.50 -0.09 0.95 14 3 Si 0.95 17.84 29.56 -169.99 -5.03 12.82 14 4 H -0.27 -4.96 7.11 56.52 0.40 -4.56 14 5 H -0.27 -5.10 7.11 56.52 0.40 -4.70 14 6 H -0.26 -4.87 7.11 56.52 0.40 -4.46 14 7 C -0.34 -8.33 10.09 -14.85 -0.15 -8.48 14 8 H 0.11 2.61 7.85 -52.49 -0.41 2.20 14 9 N -0.29 -7.56 2.95 -60.88 -0.18 -7.74 14 10 C 0.25 6.27 11.18 -89.33 -1.00 5.27 14 11 N -0.54 -13.81 11.27 -11.90 -0.13 -13.94 14 12 C 0.04 0.91 7.22 -84.65 -0.61 0.30 14 13 C -0.06 -1.30 10.10 -39.24 -0.40 -1.70 14 14 C -0.14 -2.54 9.79 -39.56 -0.39 -2.92 14 15 C -0.06 -1.07 6.32 -39.42 -0.25 -1.32 14 16 Cl -0.10 -1.60 28.94 -51.86 -1.50 -3.10 14 17 C -0.07 -1.49 9.78 -39.47 -0.39 -1.88 14 18 C 0.00 0.02 6.81 -83.86 -0.57 -0.55 14 19 H 0.29 6.37 8.31 -40.82 -0.34 6.03 14 20 H 0.22 5.34 6.29 -52.48 -0.33 5.01 14 21 H 0.12 2.13 8.06 -52.49 -0.42 1.70 14 22 H 0.12 1.83 8.06 -52.49 -0.42 1.41 14 23 H 0.12 2.40 8.06 -52.49 -0.42 1.98 14 LS Contribution 228.18 15.07 3.44 3.44 Total: -1.00 -26.39 228.18 -7.79 -34.18 By element: Atomic # 1 Polarization: 5.76 SS G_CDS: -1.15 Total: 4.62 kcal Atomic # 6 Polarization: -6.49 SS G_CDS: -3.84 Total: -10.33 kcal Atomic # 7 Polarization: -41.91 SS G_CDS: 0.29 Total: -41.62 kcal Atomic # 14 Polarization: 17.84 SS G_CDS: -5.03 Total: 12.82 kcal Atomic # 17 Polarization: -1.60 SS G_CDS: -1.50 Total: -3.10 kcal Total LS contribution 3.44 Total: 3.44 kcal Total: -26.39 -7.79 -34.18 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260244630.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.789 kcal (2) G-P(sol) polarization free energy of solvation -26.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.181 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds