Wall clock time and date at job start Mon Mar 30 2020 02:56:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31563 * 1 3 3 Si 1.86799 * 120.00103 * 2 1 4 4 H 1.48504 * 109.47081 * 270.00261 * 3 2 1 5 5 H 1.48497 * 109.47023 * 30.00236 * 3 2 1 6 6 H 1.48497 * 109.47226 * 150.00434 * 3 2 1 7 7 C 1.38656 * 119.99839 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99543 * 179.97438 * 7 2 1 9 9 O 1.34833 * 120.00086 * 0.27184 * 7 2 1 10 10 C 1.35748 * 116.99730 * 174.66638 * 9 7 2 11 11 C 1.38977 * 120.41637 * 185.23125 * 10 9 7 12 12 C 1.37560 * 120.45666 * 179.55655 * 11 10 9 13 13 C 1.39688 * 121.14935 * 0.57104 * 12 11 10 14 14 C 1.38970 * 117.91305 * 0.03316 * 13 12 11 15 15 C 1.38653 * 120.42567 * 5.51502 * 10 9 7 16 16 S 1.77446 * 108.27743 * 179.27685 * 14 13 12 17 17 C 1.83291 * 96.62709 * 344.98383 * 16 14 13 18 18 C 1.50904 * 126.75735 * 180.39682 * 13 12 11 19 19 H 0.96997 * 119.99405 * 359.97438 * 1 2 3 20 20 H 1.08001 * 119.77259 * 359.82539 * 11 10 9 21 21 H 1.07999 * 119.42530 * 180.31248 * 12 11 10 22 22 H 1.08004 * 119.94621 * 0.02562 * 15 10 9 23 23 H 1.08993 * 111.10275 * 266.88884 * 17 16 14 24 24 H 1.09005 * 111.10084 * 142.79255 * 17 16 14 25 25 H 1.08994 * 109.28258 * 320.85923 * 18 13 12 26 26 H 1.09001 * 109.28199 * 80.31254 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 2.4971 2.0464 -1.4001 5 1 1.4471 2.6526 0.7001 6 1 3.5472 1.4401 0.6999 7 6 2.0089 -1.2008 -0.0005 8 1 3.0889 -1.2008 -0.0010 9 8 1.3347 -2.3685 -0.0066 10 6 2.0700 -3.5040 -0.1192 11 6 1.4437 -4.7386 -0.2420 12 6 2.1880 -5.8888 -0.3653 13 6 3.5843 -5.8502 -0.3587 14 6 4.2002 -4.6118 -0.2228 15 6 3.4553 -3.4475 -0.1073 16 16 5.9571 -4.8608 -0.2255 17 6 5.9147 -6.6706 0.0613 18 6 4.5209 -7.0257 -0.4928 19 1 -0.4849 0.8401 0.0004 20 1 0.3651 -4.7948 -0.2450 21 1 1.6840 -6.8388 -0.4648 22 1 3.9553 -2.4954 -0.0075 23 1 5.9848 -6.9012 1.1243 24 1 6.7006 -7.1755 -0.5005 25 1 4.1177 -7.8724 0.0626 26 1 4.6101 -7.2967 -1.5449 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260281610.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:10 Heat of formation + Delta-G solvation = -24.492446 kcal Electronic energy + Delta-G solvation = -12397.784237 eV Core-core repulsion = 10146.288508 eV Total energy + Delta-G solvation = -2251.495729 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 222.046 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.86648 -38.69907 -35.01311 -34.05850 -31.79494 -29.61797 -27.38715 -24.89301 -23.77003 -21.95076 -19.95330 -19.37177 -17.31916 -16.47218 -16.29356 -16.09476 -16.02181 -15.54848 -14.81216 -14.62834 -14.05079 -13.66131 -13.43366 -13.22573 -12.89478 -12.63068 -12.37205 -12.34099 -12.14911 -11.45056 -11.00942 -10.86916 -10.45105 -9.15556 -8.52820 -8.37420 -6.21387 0.30284 0.50254 0.66493 1.32326 1.37674 1.40996 1.49522 2.13976 2.66254 3.03651 3.40550 3.66163 3.90094 4.05637 4.19506 4.35762 4.53907 4.67217 4.75280 4.87399 4.94826 5.05898 5.12475 5.33435 5.48204 5.56080 5.95224 6.01170 6.91486 7.67576 8.69689 Molecular weight = 222.05amu Principal moments of inertia in cm(-1) A = 0.042512 B = 0.007715 C = 0.006577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.480404 B = 3628.596221 C = 4256.461501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.016 4.016 3 Si 1.016 2.984 4 H -0.262 1.262 5 H -0.265 1.265 6 H -0.258 1.258 7 C -0.418 4.418 8 H 0.094 0.906 9 O -0.220 6.220 10 C 0.129 3.871 11 C -0.195 4.195 12 C -0.041 4.041 13 C -0.188 4.188 14 C -0.047 4.047 15 C -0.220 4.220 16 S -0.205 6.205 17 C -0.065 4.065 18 C -0.069 4.069 19 H 0.275 0.725 20 H 0.128 0.872 21 H 0.163 0.837 22 H 0.111 0.889 23 H 0.110 0.890 24 H 0.144 0.856 25 H 0.114 0.886 26 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.886 -12.949 -0.554 16.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.214 4.214 3 Si 0.835 3.165 4 H -0.187 1.187 5 H -0.190 1.190 6 H -0.181 1.181 7 C -0.494 4.494 8 H 0.112 0.888 9 O -0.126 6.126 10 C 0.076 3.924 11 C -0.215 4.215 12 C -0.060 4.060 13 C -0.194 4.194 14 C -0.159 4.159 15 C -0.245 4.245 16 S 0.035 5.965 17 C -0.212 4.212 18 C -0.106 4.106 19 H 0.084 0.916 20 H 0.146 0.854 21 H 0.180 0.820 22 H 0.129 0.871 23 H 0.128 0.872 24 H 0.162 0.838 25 H 0.132 0.868 26 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 10.575 -12.029 -0.669 16.031 hybrid contribution -1.037 0.608 0.183 1.216 sum 9.538 -11.421 -0.487 14.888 Atomic orbital electron populations 1.70163 1.07835 1.29019 1.48135 1.26536 0.96874 1.02502 0.95523 0.84629 0.77778 0.74701 0.79381 1.18685 1.18964 1.18138 1.21738 0.92268 0.81519 1.53888 0.88846 1.83952 1.35311 1.12410 1.80964 1.19679 0.90384 0.88545 0.93793 1.20401 1.00604 0.89943 1.10595 1.20764 0.91749 0.97703 0.95806 1.21086 0.95125 0.93687 1.09485 1.21827 0.96025 0.95922 1.02129 1.20314 0.93089 0.97726 1.13346 1.85964 1.03408 1.15578 1.91534 1.24514 1.01011 0.89142 1.06578 1.20748 0.90494 0.95564 1.03792 0.91561 0.85410 0.81977 0.87144 0.87196 0.83777 0.86805 0.88318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.17 13.67 21.61 0.30 -55.87 15 2 C -0.02 -0.92 5.49 84.83 0.47 -0.45 15 3 Si 1.02 43.84 29.55 68.60 2.03 45.87 15 4 H -0.26 -10.75 7.11 99.48 0.71 -10.04 15 5 H -0.27 -10.82 7.11 99.48 0.71 -10.11 15 6 H -0.26 -10.56 7.11 99.48 0.71 -9.85 15 7 C -0.42 -25.07 9.50 67.92 0.64 -24.43 15 8 H 0.09 5.31 5.23 -2.91 -0.02 5.30 15 9 O -0.22 -13.46 9.77 -22.75 -0.22 -13.68 15 10 C 0.13 6.60 6.65 22.55 0.15 6.75 15 11 C -0.19 -8.17 9.95 22.29 0.22 -7.95 15 12 C -0.04 -1.33 9.97 22.46 0.22 -1.10 15 13 C -0.19 -6.02 5.98 -19.27 -0.12 -6.13 15 14 C -0.05 -1.84 6.48 22.55 0.15 -1.70 15 15 C -0.22 -10.54 9.19 22.48 0.21 -10.33 15 16 S -0.20 -6.45 23.08 -56.49 -1.30 -7.76 15 17 C -0.07 -1.23 7.60 72.37 0.55 -0.68 15 18 C -0.07 -1.38 6.27 30.30 0.19 -1.19 15 19 H 0.28 15.41 8.31 -92.71 -0.77 14.64 15 20 H 0.13 5.11 8.06 -2.91 -0.02 5.09 15 21 H 0.16 3.73 8.06 -2.91 -0.02 3.70 15 22 H 0.11 5.59 5.67 -2.91 -0.02 5.57 15 23 H 0.11 1.78 8.14 -2.39 -0.02 1.76 15 24 H 0.14 1.76 8.14 -2.38 -0.02 1.74 15 25 H 0.11 1.64 8.14 -2.39 -0.02 1.62 15 26 H 0.10 1.73 8.14 -2.39 -0.02 1.71 15 Total: -1.00 -72.21 242.36 4.67 -67.53 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: 1.19 Total: 11.13 kcal Atomic # 6 Polarization: -49.90 SS G_CDS: 2.68 Total: -47.22 kcal Atomic # 7 Polarization: -56.17 SS G_CDS: 0.30 Total: -55.87 kcal Atomic # 8 Polarization: -13.46 SS G_CDS: -0.22 Total: -13.68 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal Atomic # 16 Polarization: -6.45 SS G_CDS: -1.30 Total: -7.76 kcal Total: -72.21 4.67 -67.53 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260281610.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.040 kcal (2) G-P(sol) polarization free energy of solvation -72.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds