Wall clock time and date at job start Mon Mar 30 2020 02:56:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31591 * 1 3 3 Si 1.86795 * 120.00147 * 2 1 4 4 H 1.48500 * 109.47349 * 359.97438 * 3 2 1 5 5 H 1.48498 * 109.47423 * 119.99697 * 3 2 1 6 6 H 1.48507 * 109.46976 * 239.99601 * 3 2 1 7 7 C 1.38613 * 119.99798 * 179.71642 * 2 1 3 8 8 H 1.07998 * 119.99863 * 179.97438 * 7 2 1 9 9 O 1.34814 * 119.99981 * 0.02562 * 7 2 1 10 10 C 1.35778 * 117.00073 * 174.94443 * 9 7 2 11 11 C 1.38944 * 119.80524 * 5.54750 * 10 9 7 12 12 C 1.37911 * 119.22982 * 180.12320 * 11 10 9 13 13 C 1.38898 * 120.25657 * 359.92060 * 12 11 10 14 14 C 1.38948 * 121.24379 * 359.83756 * 13 12 11 15 15 C 1.38320 * 119.80825 * 185.27509 * 10 9 7 16 16 C 1.50895 * 115.36122 * 180.50543 * 14 13 12 17 17 C 1.54128 * 110.51165 * 339.44202 * 16 14 13 18 18 S 1.77455 * 130.49003 * 179.65015 * 13 12 11 19 19 H 0.97003 * 119.99990 * 179.97438 * 1 2 3 20 20 H 1.07995 * 120.38751 * 0.14708 * 11 10 9 21 21 H 1.08003 * 119.87535 * 179.89833 * 12 11 10 22 22 H 1.08003 * 119.49669 * 0.04634 * 15 10 9 23 23 H 1.08991 * 109.27792 * 219.15530 * 16 14 13 24 24 H 1.09001 * 109.20945 * 99.68223 * 16 14 13 25 25 H 1.09000 * 111.10011 * 270.34123 * 17 16 14 26 26 H 1.09001 * 111.09821 * 146.25678 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3159 0.0000 0.0000 3 14 2.2499 1.6177 0.0000 4 1 1.2850 2.7465 -0.0006 5 1 3.1036 1.6964 1.2125 6 1 3.1038 1.6962 -1.2125 7 6 2.0089 -1.2004 0.0059 8 1 3.0889 -1.2005 0.0055 9 8 1.3348 -2.3679 0.0112 10 6 2.0702 -3.5048 -0.0898 11 6 3.4578 -3.4334 -0.0757 12 6 4.1931 -4.5953 -0.1816 13 6 3.5512 -5.8214 -0.2991 14 6 2.1646 -5.9110 -0.3097 15 6 1.4337 -4.7279 -0.2003 16 6 1.6081 -7.3083 -0.4313 17 6 2.6664 -8.2618 -1.0200 18 16 4.2156 -7.4592 -0.4581 19 1 -0.4850 -0.8401 -0.0004 20 1 3.9547 -2.4791 0.0174 21 1 5.2722 -4.5517 -0.1734 22 1 0.3544 -4.7671 -0.2061 23 1 0.7353 -7.2925 -1.0838 24 1 1.3128 -7.6639 0.5559 25 1 2.6099 -8.2869 -2.1082 26 1 2.5689 -9.2632 -0.6007 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260305999.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:08 Heat of formation + Delta-G solvation = -29.582967 kcal Electronic energy + Delta-G solvation = -12400.118684 eV Core-core repulsion = 10148.402214 eV Total energy + Delta-G solvation = -2251.716470 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 222.046 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.03320 -38.82904 -35.19837 -34.23645 -31.38977 -29.90124 -27.06366 -24.96822 -23.77332 -22.38146 -19.98788 -18.93118 -17.90650 -17.10866 -16.28745 -15.95654 -15.64766 -15.56167 -15.32688 -14.54285 -14.32546 -13.61118 -13.24906 -13.14562 -12.76470 -12.65145 -12.49479 -12.11256 -11.93830 -11.41277 -11.11539 -10.86851 -9.99185 -9.84545 -8.97626 -8.22125 -6.27450 0.23142 0.36555 0.71752 1.37161 1.49164 1.60653 1.78843 2.32624 2.60669 3.01036 3.11687 3.69391 3.77592 3.89121 4.10401 4.24133 4.44780 4.47808 4.66956 4.80365 4.85050 5.01357 5.08347 5.21813 5.37458 5.57218 5.78436 6.19470 6.81524 7.54203 8.47058 Molecular weight = 222.05amu Principal moments of inertia in cm(-1) A = 0.065147 B = 0.006586 C = 0.006031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 429.691252 B = 4250.221766 C = 4641.643724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.041 4.041 3 Si 1.144 2.856 4 H -0.273 1.273 5 H -0.259 1.259 6 H -0.260 1.260 7 C -0.490 4.490 8 H 0.094 0.906 9 O -0.245 6.245 10 C 0.124 3.876 11 C -0.223 4.223 12 C -0.040 4.040 13 C -0.169 4.169 14 C -0.059 4.059 15 C -0.183 4.183 16 C -0.084 4.084 17 C -0.066 4.066 18 S -0.181 6.181 19 H 0.261 0.739 20 H 0.132 0.868 21 H 0.141 0.859 22 H 0.121 0.879 23 H 0.107 0.893 24 H 0.107 0.893 25 H 0.109 0.891 26 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.176 -13.314 -1.646 14.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.238 4.238 3 Si 0.960 3.040 4 H -0.198 1.198 5 H -0.184 1.184 6 H -0.184 1.184 7 C -0.565 4.565 8 H 0.111 0.889 9 O -0.152 6.152 10 C 0.073 3.927 11 C -0.244 4.244 12 C -0.063 4.063 13 C -0.280 4.280 14 C -0.064 4.064 15 C -0.203 4.203 16 C -0.122 4.122 17 C -0.214 4.214 18 S 0.057 5.943 19 H 0.070 0.930 20 H 0.150 0.850 21 H 0.159 0.841 22 H 0.139 0.861 23 H 0.125 0.875 24 H 0.125 0.875 25 H 0.127 0.873 26 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 6.885 -12.221 -1.445 14.101 hybrid contribution -1.168 -0.789 -0.095 1.412 sum 5.717 -13.010 -1.540 14.294 Atomic orbital electron populations 1.70726 1.07749 1.30173 1.46227 1.28392 0.96879 1.04837 0.93665 0.82594 0.73798 0.68807 0.78830 1.19814 1.18397 1.18432 1.22619 0.93835 0.82745 1.57350 0.88855 1.83648 1.36676 1.12995 1.81878 1.19479 0.91339 0.87396 0.94511 1.21232 0.93126 0.99477 1.10524 1.20331 0.99921 0.89254 0.96805 1.21855 0.95690 0.96841 1.13657 1.20924 0.92433 0.95216 0.97784 1.19953 0.99829 0.89222 1.11324 1.20947 0.99532 0.87436 1.04278 1.24427 0.90041 1.01812 1.05081 1.85668 1.21580 1.00960 1.86136 0.93036 0.84999 0.84127 0.86103 0.87475 0.87495 0.87258 0.83569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.70 13.70 21.61 0.30 -56.40 15 2 C -0.04 -2.34 5.49 84.82 0.47 -1.87 15 3 Si 1.14 47.53 29.92 68.60 2.05 49.58 15 4 H -0.27 -11.27 7.11 99.48 0.71 -10.56 15 5 H -0.26 -9.78 7.11 99.48 0.71 -9.07 15 6 H -0.26 -9.79 7.11 99.48 0.71 -9.09 15 7 C -0.49 -28.40 9.48 67.91 0.64 -27.75 15 8 H 0.09 5.02 5.19 -2.91 -0.02 5.00 15 9 O -0.24 -14.41 9.15 -22.90 -0.21 -14.62 15 10 C 0.12 6.19 6.63 22.46 0.15 6.34 15 11 C -0.22 -9.97 9.18 22.36 0.21 -9.76 15 12 C -0.04 -1.53 10.05 22.35 0.22 -1.30 15 13 C -0.17 -5.96 6.48 22.60 0.15 -5.81 15 14 C -0.06 -2.03 5.98 -19.33 -0.12 -2.14 15 15 C -0.18 -7.73 9.91 22.59 0.22 -7.50 15 16 C -0.08 -1.93 6.27 30.29 0.19 -1.74 15 17 C -0.07 -1.22 7.60 72.36 0.55 -0.67 15 18 S -0.18 -4.96 23.08 -56.49 -1.30 -6.26 15 19 H 0.26 16.84 7.97 -92.71 -0.74 16.10 15 20 H 0.13 5.91 5.64 -2.91 -0.02 5.89 15 21 H 0.14 4.50 8.06 -2.91 -0.02 4.48 15 22 H 0.12 4.89 8.06 -2.91 -0.02 4.87 15 23 H 0.11 2.07 8.14 -2.39 -0.02 2.05 15 24 H 0.11 2.14 8.14 -2.39 -0.02 2.12 15 25 H 0.11 1.75 8.14 -2.39 -0.02 1.73 15 26 H 0.15 1.71 8.14 -2.39 -0.02 1.69 15 Total: -1.00 -69.43 241.70 4.74 -64.69 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: 1.23 Total: 15.23 kcal Atomic # 6 Polarization: -54.90 SS G_CDS: 2.68 Total: -52.21 kcal Atomic # 7 Polarization: -56.70 SS G_CDS: 0.30 Total: -56.40 kcal Atomic # 8 Polarization: -14.41 SS G_CDS: -0.21 Total: -14.62 kcal Atomic # 14 Polarization: 47.53 SS G_CDS: 2.05 Total: 49.58 kcal Atomic # 16 Polarization: -4.96 SS G_CDS: -1.30 Total: -6.26 kcal Total: -69.43 4.74 -64.69 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260305999.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.104 kcal (2) G-P(sol) polarization free energy of solvation -69.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds