Wall clock time and date at job start Mon Mar 30 2020 03:01:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86807 * 119.99816 * 2 1 4 4 H 1.48503 * 109.46883 * 274.98922 * 3 2 1 5 5 H 1.48493 * 109.47211 * 34.98818 * 3 2 1 6 6 H 1.48498 * 109.46842 * 154.99169 * 3 2 1 7 7 C 1.37870 * 120.00140 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00385 * 185.68738 * 7 2 1 9 9 C 1.50705 * 120.00093 * 5.68232 * 7 2 1 10 10 C 1.52995 * 108.78694 * 294.97162 * 9 7 2 11 11 F 1.39896 * 109.47197 * 301.37611 * 10 9 7 12 12 C 1.52971 * 108.93110 * 176.34463 * 9 7 2 13 13 C 1.55092 * 108.66845 * 269.19581 * 12 9 7 14 14 S 1.83839 * 101.19100 * 318.12855 * 13 12 9 15 15 O 1.42102 * 109.61324 * 148.95095 * 14 13 12 16 16 O 1.42101 * 109.61777 * 282.90313 * 14 13 12 17 17 C 1.53625 * 108.92425 * 53.58642 * 9 7 2 18 18 H 0.97006 * 119.99684 * 0.02562 * 1 2 3 19 19 H 1.08996 * 109.47237 * 61.37771 * 10 9 7 20 20 H 1.09000 * 109.46774 * 181.37997 * 10 9 7 21 21 H 1.09002 * 109.64600 * 149.35780 * 12 9 7 22 22 H 1.09001 * 109.64975 * 29.04155 * 12 9 7 23 23 H 1.08997 * 111.08017 * 76.10846 * 13 12 9 24 24 H 1.08999 * 111.07975 * 200.14951 * 13 12 9 25 25 H 1.09000 * 110.27384 * 359.40322 * 17 9 7 26 26 H 1.09005 * 110.34591 * 237.37394 * 17 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.3912 2.1074 -1.3948 5 1 1.5033 2.6200 0.8028 6 1 3.5955 1.4121 0.5919 7 6 2.0046 -1.1940 0.0005 8 1 3.0806 -1.1963 0.0932 9 6 1.2566 -2.4960 -0.1281 10 6 0.3713 -2.6796 1.1060 11 9 1.1673 -2.6719 2.2564 12 6 2.2658 -3.6439 -0.1905 13 6 2.6226 -3.9111 -1.6759 14 16 0.9696 -3.7779 -2.4694 15 8 1.1148 -3.2852 -3.7944 16 8 0.2262 -4.9641 -2.2252 17 6 0.3644 -2.4367 -1.3773 18 1 -0.4850 0.8401 -0.0004 19 1 -0.3517 -1.8656 1.1590 20 1 -0.1568 -3.6306 1.0360 21 1 1.8283 -4.5407 0.2485 22 1 3.1663 -3.3706 0.3595 23 1 3.3034 -3.1508 -2.0585 24 1 3.0402 -4.9096 -1.8053 25 1 0.4699 -1.4709 -1.8713 26 1 -0.6773 -2.6106 -1.1076 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260311894.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:37 Heat of formation + Delta-G solvation = -128.669836 kcal Electronic energy + Delta-G solvation = -14220.167170 eV Core-core repulsion = 11533.384746 eV Total energy + Delta-G solvation = -2686.782424 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 222.051 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -46.29879 -36.81616 -36.26485 -35.32859 -32.40021 -29.49284 -26.24936 -25.28069 -23.15304 -19.42875 -18.22998 -16.92389 -15.94592 -15.36414 -15.02938 -14.84997 -14.40862 -14.23475 -13.97581 -13.19416 -12.79614 -12.08862 -11.81150 -11.58059 -11.41239 -11.36920 -11.27891 -11.04057 -10.73938 -10.46305 -10.07471 -9.90007 -9.54030 -9.37772 -9.06304 -8.57707 -6.30147 -4.39947 0.83631 3.16438 3.21367 3.26241 3.28775 4.21362 4.28534 4.66814 4.97643 5.24365 5.38159 5.67049 5.80524 5.95720 5.99900 6.18122 6.32077 6.61691 6.66631 6.70995 7.05843 7.37179 7.68414 7.96431 8.61584 9.28407 10.73744 Molecular weight = 222.05amu Principal moments of inertia in cm(-1) A = 0.031623 B = 0.013293 C = 0.011212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.217982 B = 2105.936656 C = 2496.745119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.065 3.935 3 Si 0.898 3.102 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.271 1.271 7 C -0.510 4.510 8 H 0.068 0.932 9 C 0.046 3.954 10 C 0.070 3.930 11 F -0.227 7.227 12 C -0.105 4.105 13 C -0.568 4.568 14 S 2.342 3.658 15 O -0.962 6.962 16 O -0.960 6.960 17 C -0.511 4.511 18 H 0.267 0.733 19 H 0.103 0.897 20 H 0.035 0.965 21 H 0.064 0.936 22 H 0.091 0.909 23 H 0.133 0.867 24 H 0.117 0.883 25 H 0.146 0.854 26 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.889 -4.046 -0.856 4.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.138 4.138 3 Si 0.725 3.275 4 H -0.204 1.204 5 H -0.211 1.211 6 H -0.196 1.196 7 C -0.548 4.548 8 H 0.087 0.913 9 C 0.044 3.956 10 C 0.014 3.986 11 F -0.209 7.209 12 C -0.144 4.144 13 C -0.698 4.698 14 S 2.531 3.469 15 O -0.960 6.960 16 O -0.958 6.958 17 C -0.645 4.645 18 H 0.077 0.923 19 H 0.120 0.880 20 H 0.053 0.947 21 H 0.083 0.917 22 H 0.109 0.891 23 H 0.152 0.848 24 H 0.135 0.865 25 H 0.164 0.836 26 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 1.315 -4.442 -1.646 4.917 hybrid contribution 0.781 1.369 0.682 1.717 sum 2.096 -3.074 -0.964 3.843 Atomic orbital electron populations 1.69825 1.05971 1.27340 1.48963 1.24999 0.95004 0.99643 0.94150 0.86454 0.80054 0.82733 0.78216 1.20381 1.21051 1.19601 1.21122 0.93632 0.88738 1.51305 0.91345 1.18751 0.91260 0.95351 0.90227 1.22326 0.93169 1.01012 0.82083 1.92623 1.77415 1.98120 1.52706 1.22148 1.01757 0.98461 0.92064 1.30347 1.21019 1.09105 1.09341 1.10252 0.80305 0.78734 0.77600 1.93524 1.86020 1.81296 1.35110 1.93537 1.68970 1.46176 1.87085 1.30107 1.08241 1.15294 1.10844 0.92317 0.87951 0.94710 0.91700 0.89085 0.84836 0.86452 0.83626 0.86416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -21.95 10.06 55.43 0.56 -21.40 15 2 C 0.07 1.60 4.73 -17.82 -0.08 1.51 15 3 Si 0.90 19.63 29.54 -169.99 -5.02 14.61 15 4 H -0.28 -6.06 7.11 56.52 0.40 -5.66 15 5 H -0.28 -6.29 7.11 56.52 0.40 -5.89 15 6 H -0.27 -5.93 7.11 56.52 0.40 -5.53 15 7 C -0.51 -12.15 7.44 -34.44 -0.26 -12.41 15 8 H 0.07 1.62 7.49 -52.49 -0.39 1.23 15 9 C 0.05 0.98 0.51 -155.35 -0.08 0.90 15 10 C 0.07 1.50 5.66 37.15 0.21 1.71 15 11 F -0.23 -5.19 16.70 2.25 0.04 -5.15 15 12 C -0.11 -1.90 5.02 -25.64 -0.13 -2.03 15 13 C -0.57 -8.97 7.46 38.26 0.29 -8.68 15 14 S 2.34 42.34 6.05 -107.50 -0.65 41.69 15 15 O -0.96 -20.01 18.16 -57.67 -1.05 -21.06 15 16 O -0.96 -19.28 18.16 -57.67 -1.05 -20.33 15 17 C -0.51 -10.17 5.48 37.48 0.21 -9.97 15 18 H 0.27 6.42 8.31 -40.82 -0.34 6.08 15 19 H 0.10 2.38 6.24 -51.93 -0.32 2.06 15 20 H 0.03 0.66 8.10 -51.93 -0.42 0.24 15 21 H 0.06 1.08 7.80 -51.93 -0.41 0.67 15 22 H 0.09 1.64 7.60 -51.93 -0.39 1.25 15 23 H 0.13 2.01 8.14 -51.93 -0.42 1.59 15 24 H 0.12 1.53 8.14 -51.93 -0.42 1.10 15 25 H 0.15 3.15 6.62 -51.93 -0.34 2.80 15 26 H 0.12 2.23 7.64 -51.93 -0.40 1.84 15 LS Contribution 232.37 15.07 3.50 3.50 Total: -1.00 -29.14 232.37 -6.17 -35.31 By element: Atomic # 1 Polarization: 4.44 SS G_CDS: -2.66 Total: 1.79 kcal Atomic # 6 Polarization: -29.11 SS G_CDS: 0.15 Total: -28.96 kcal Atomic # 7 Polarization: -21.95 SS G_CDS: 0.56 Total: -21.40 kcal Atomic # 8 Polarization: -39.29 SS G_CDS: -2.09 Total: -41.39 kcal Atomic # 9 Polarization: -5.19 SS G_CDS: 0.04 Total: -5.15 kcal Atomic # 14 Polarization: 19.63 SS G_CDS: -5.02 Total: 14.61 kcal Atomic # 16 Polarization: 42.34 SS G_CDS: -0.65 Total: 41.69 kcal Total LS contribution 3.50 Total: 3.50 kcal Total: -29.14 -6.17 -35.31 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260311894.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.357 kcal (2) G-P(sol) polarization free energy of solvation -29.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds