Wall clock time and date at job start Mon Mar 30 2020 03:01:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86807 * 119.99816 * 2 1 4 4 H 1.48503 * 109.46883 * 274.98922 * 3 2 1 5 5 H 1.48493 * 109.47211 * 34.98818 * 3 2 1 6 6 H 1.48498 * 109.46842 * 154.99169 * 3 2 1 7 7 C 1.37870 * 120.00140 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00385 * 185.68738 * 7 2 1 9 9 C 1.50705 * 120.00093 * 5.68232 * 7 2 1 10 10 C 1.52995 * 108.78694 * 294.97162 * 9 7 2 11 11 F 1.39896 * 109.47197 * 301.37611 * 10 9 7 12 12 C 1.52971 * 108.93110 * 176.34463 * 9 7 2 13 13 C 1.55092 * 108.66845 * 269.19581 * 12 9 7 14 14 S 1.83839 * 101.19100 * 318.12855 * 13 12 9 15 15 O 1.42102 * 109.61324 * 148.95095 * 14 13 12 16 16 O 1.42101 * 109.61777 * 282.90313 * 14 13 12 17 17 C 1.53625 * 108.92425 * 53.58642 * 9 7 2 18 18 H 0.97006 * 119.99684 * 0.02562 * 1 2 3 19 19 H 1.08996 * 109.47237 * 61.37771 * 10 9 7 20 20 H 1.09000 * 109.46774 * 181.37997 * 10 9 7 21 21 H 1.09002 * 109.64600 * 149.35780 * 12 9 7 22 22 H 1.09001 * 109.64975 * 29.04155 * 12 9 7 23 23 H 1.08997 * 111.08017 * 76.10846 * 13 12 9 24 24 H 1.08999 * 111.07975 * 200.14951 * 13 12 9 25 25 H 1.09000 * 110.27384 * 359.40322 * 17 9 7 26 26 H 1.09005 * 110.34591 * 237.37394 * 17 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.3912 2.1074 -1.3948 5 1 1.5033 2.6200 0.8028 6 1 3.5955 1.4121 0.5919 7 6 2.0046 -1.1940 0.0005 8 1 3.0806 -1.1963 0.0932 9 6 1.2566 -2.4960 -0.1281 10 6 0.3713 -2.6796 1.1060 11 9 1.1673 -2.6719 2.2564 12 6 2.2658 -3.6439 -0.1905 13 6 2.6226 -3.9111 -1.6759 14 16 0.9696 -3.7779 -2.4694 15 8 1.1148 -3.2852 -3.7944 16 8 0.2262 -4.9641 -2.2252 17 6 0.3644 -2.4367 -1.3773 18 1 -0.4850 0.8401 -0.0004 19 1 -0.3517 -1.8656 1.1590 20 1 -0.1568 -3.6306 1.0360 21 1 1.8283 -4.5407 0.2485 22 1 3.1663 -3.3706 0.3595 23 1 3.3034 -3.1508 -2.0585 24 1 3.0402 -4.9096 -1.8053 25 1 0.4699 -1.4709 -1.8713 26 1 -0.6773 -2.6106 -1.1076 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260311894.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:37 Heat of formation + Delta-G solvation = -148.916206 kcal Electronic energy + Delta-G solvation = -14221.045119 eV Core-core repulsion = 11533.384746 eV Total energy + Delta-G solvation = -2687.660373 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 222.051 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -48.06038 -38.39609 -37.82723 -36.88744 -34.12952 -31.00887 -27.87282 -27.06898 -24.63404 -21.06836 -19.71177 -18.61314 -17.48356 -16.95047 -16.63445 -16.50176 -16.08114 -15.96952 -15.62622 -14.62671 -14.48286 -13.62535 -13.46595 -13.16794 -12.98383 -12.92573 -12.86636 -12.76565 -12.38404 -12.12218 -11.69119 -11.57812 -11.06886 -11.03584 -10.75483 -10.36985 -8.13660 -6.26772 -0.62539 1.42727 1.47896 1.53984 1.76310 2.42202 2.82706 3.09605 3.27794 3.84719 4.02348 4.11919 4.34405 4.38935 4.47094 4.76412 4.88221 5.00414 5.13346 5.21041 5.38377 5.68046 5.89756 6.21674 6.77855 7.42658 8.88326 Molecular weight = 222.05amu Principal moments of inertia in cm(-1) A = 0.031623 B = 0.013293 C = 0.011212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.217982 B = 2105.936656 C = 2496.745119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.025 3.975 3 Si 0.942 3.058 4 H -0.277 1.277 5 H -0.290 1.290 6 H -0.270 1.270 7 C -0.519 4.519 8 H 0.066 0.934 9 C 0.036 3.964 10 C 0.066 3.934 11 F -0.236 7.236 12 C -0.109 4.109 13 C -0.543 4.543 14 S 2.369 3.631 15 O -0.990 6.990 16 O -0.977 6.977 17 C -0.519 4.519 18 H 0.264 0.736 19 H 0.079 0.921 20 H 0.063 0.937 21 H 0.083 0.917 22 H 0.093 0.907 23 H 0.145 0.855 24 H 0.158 0.842 25 H 0.124 0.876 26 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.064 -5.118 -1.019 6.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.176 4.176 3 Si 0.769 3.231 4 H -0.203 1.203 5 H -0.216 1.216 6 H -0.194 1.194 7 C -0.557 4.557 8 H 0.084 0.916 9 C 0.034 3.966 10 C 0.010 3.990 11 F -0.217 7.217 12 C -0.148 4.148 13 C -0.676 4.676 14 S 2.560 3.440 15 O -0.987 6.987 16 O -0.974 6.974 17 C -0.652 4.652 18 H 0.073 0.927 19 H 0.097 0.903 20 H 0.081 0.919 21 H 0.101 0.899 22 H 0.112 0.888 23 H 0.164 0.836 24 H 0.176 0.824 25 H 0.142 0.858 26 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 2.466 -5.504 -1.813 6.298 hybrid contribution 0.436 1.680 0.766 1.897 sum 2.903 -3.825 -1.047 4.914 Atomic orbital electron populations 1.69925 1.06663 1.27418 1.49975 1.25557 0.95611 1.01864 0.94589 0.85771 0.79110 0.80293 0.77938 1.20281 1.21635 1.19404 1.21440 0.93757 0.90064 1.50396 0.91570 1.18853 0.91864 0.95570 0.90299 1.22374 0.93010 1.01632 0.81997 1.92601 1.77640 1.98186 1.53290 1.22134 1.01051 0.97938 0.93631 1.30256 1.18503 1.12022 1.06819 1.09408 0.81066 0.77162 0.76390 1.93485 1.86780 1.81636 1.36793 1.93511 1.70576 1.46190 1.87128 1.30033 1.08500 1.15612 1.11040 0.92688 0.90262 0.91896 0.89871 0.88844 0.83648 0.82419 0.85757 0.86376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -45.30 10.06 21.45 0.22 -45.08 15 2 C 0.02 1.20 4.73 84.65 0.40 1.60 15 3 Si 0.94 40.09 29.54 68.60 2.03 42.12 15 4 H -0.28 -11.64 7.11 99.48 0.71 -10.94 15 5 H -0.29 -12.51 7.11 99.48 0.71 -11.80 15 6 H -0.27 -11.27 7.11 99.48 0.71 -10.57 15 7 C -0.52 -24.28 7.44 25.60 0.19 -24.09 15 8 H 0.07 3.05 7.49 -2.91 -0.02 3.03 15 9 C 0.04 1.48 0.51 -52.73 -0.03 1.46 15 10 C 0.07 2.76 5.66 71.98 0.41 3.17 15 11 F -0.24 -10.50 16.70 44.97 0.75 -9.75 15 12 C -0.11 -3.57 5.02 31.30 0.16 -3.41 15 13 C -0.54 -14.98 7.46 72.70 0.54 -14.44 15 14 S 2.37 80.74 6.05 -56.49 -0.34 80.39 15 15 O -0.99 -39.69 18.16 -127.52 -2.32 -42.00 15 16 O -0.98 -36.91 18.16 -127.52 -2.32 -39.22 15 17 C -0.52 -20.36 5.48 72.19 0.40 -19.97 15 18 H 0.26 12.90 8.31 -92.70 -0.77 12.13 15 19 H 0.08 3.71 6.24 -2.39 -0.01 3.70 15 20 H 0.06 2.27 8.10 -2.39 -0.02 2.25 15 21 H 0.08 2.44 7.80 -2.39 -0.02 2.42 15 22 H 0.09 3.07 7.60 -2.39 -0.02 3.06 15 23 H 0.15 3.80 8.14 -2.39 -0.02 3.78 15 24 H 0.16 3.20 8.14 -2.39 -0.02 3.18 15 25 H 0.12 5.43 6.62 -2.39 -0.02 5.41 15 26 H 0.12 4.49 7.64 -2.38 -0.02 4.47 15 Total: -1.00 -60.37 232.37 1.27 -59.10 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: 1.18 Total: 10.12 kcal Atomic # 6 Polarization: -57.75 SS G_CDS: 2.07 Total: -55.68 kcal Atomic # 7 Polarization: -45.30 SS G_CDS: 0.22 Total: -45.08 kcal Atomic # 8 Polarization: -76.60 SS G_CDS: -4.63 Total: -81.23 kcal Atomic # 9 Polarization: -10.50 SS G_CDS: 0.75 Total: -9.75 kcal Atomic # 14 Polarization: 40.09 SS G_CDS: 2.03 Total: 42.12 kcal Atomic # 16 Polarization: 80.74 SS G_CDS: -0.34 Total: 80.39 kcal Total: -60.37 1.27 -59.10 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260311894.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.821 kcal (2) G-P(sol) polarization free energy of solvation -60.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds