Wall clock time and date at job start Mon Mar 30 2020 02:47:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30524 * 1 3 3 Si 1.86801 * 119.99896 * 2 1 4 4 H 1.48496 * 109.47401 * 269.99932 * 3 2 1 5 5 H 1.48509 * 109.47144 * 30.00051 * 3 2 1 6 6 H 1.48504 * 109.47204 * 149.99584 * 3 2 1 7 7 C 1.40457 * 120.00330 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00185 * 197.50329 * 7 2 1 9 9 C 1.40135 * 119.99845 * 17.49773 * 7 2 1 10 10 C 1.38932 * 120.30062 * 25.13086 * 9 7 2 11 11 C 1.41228 * 118.46218 * 180.02562 * 10 9 7 12 12 O 1.22370 * 120.30957 * 179.97438 * 11 10 9 13 13 N 1.33323 * 119.37642 * 359.97167 * 11 10 9 14 14 C 1.32904 * 122.23853 * 359.97438 * 13 11 10 15 15 S 1.76509 * 129.26792 * 180.02562 * 14 13 11 16 16 C 1.75719 * 90.70688 * 179.77743 * 15 14 13 17 17 C 1.31265 * 109.62128 * 0.32732 * 16 15 14 18 18 N 1.35410 * 121.57929 * 0.02562 * 14 13 11 19 19 H 0.97008 * 120.00326 * 359.97438 * 1 2 3 20 20 H 1.07997 * 120.76255 * 359.97438 * 10 9 7 21 21 H 1.08001 * 125.18824 * 180.19526 * 16 15 14 22 22 H 1.08000 * 121.68789 * 179.87025 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3052 0.0000 0.0000 3 14 2.2392 1.6178 0.0000 4 1 2.4868 2.0465 -1.4000 5 1 1.4366 2.6527 0.7001 6 1 3.5368 1.4403 0.7001 7 6 2.0076 -1.2164 0.0005 8 1 3.0501 -1.2379 0.2818 9 6 1.3556 -2.4021 -0.3638 10 6 0.2434 -2.3633 -1.1955 11 6 -0.3840 -3.5815 -1.5375 12 8 -1.3663 -3.5867 -2.2673 13 7 0.1039 -4.7257 -1.0578 14 6 1.1684 -4.7647 -0.2631 15 16 1.9647 -6.1588 0.4704 16 6 3.1483 -5.1083 1.2342 17 6 2.8935 -3.8585 0.9243 18 7 1.8196 -3.6362 0.1058 19 1 -0.4851 0.8401 0.0004 20 1 -0.1332 -1.4233 -1.5709 21 1 3.9601 -5.4402 1.8644 22 1 3.5029 -3.0469 1.2935 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260390140.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:51 Heat of formation + Delta-G solvation = 28.142547 kcal Electronic energy + Delta-G solvation = -12573.677899 eV Core-core repulsion = 10220.924252 eV Total energy + Delta-G solvation = -2352.753648 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 222.020 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.66424 -37.15845 -34.89949 -33.72128 -31.43109 -29.05155 -26.56854 -24.58363 -22.17387 -21.02260 -18.78671 -17.19524 -16.95504 -16.02859 -15.41759 -15.10428 -14.21016 -14.02011 -13.15268 -12.71868 -12.70461 -12.19346 -11.96171 -11.61922 -11.16347 -10.81831 -10.62098 -10.30337 -10.06460 -9.82297 -9.48028 -7.86726 -7.82050 -7.22588 -7.03699 -5.11862 1.33661 1.45050 2.06128 2.25403 2.63560 2.79621 2.84916 3.07142 3.28136 3.57052 4.37530 5.20241 5.38155 5.45348 5.61761 5.80661 6.47362 6.62198 6.74513 6.92584 7.25096 7.70440 7.84057 8.09947 8.34716 9.05322 9.65012 9.67010 Molecular weight = 222.02amu Principal moments of inertia in cm(-1) A = 0.031598 B = 0.011483 C = 0.008627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.928190 B = 2437.751571 C = 3244.846563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.742 5.742 2 C 0.078 3.922 3 Si 0.930 3.070 4 H -0.261 1.261 5 H -0.271 1.271 6 H -0.258 1.258 7 C -0.453 4.453 8 H 0.092 0.908 9 C 0.289 3.711 10 C -0.377 4.377 11 C 0.507 3.493 12 O -0.579 6.579 13 N -0.580 5.580 14 C 0.329 3.671 15 S 0.120 5.880 16 C -0.277 4.277 17 C 0.093 3.907 18 N -0.451 5.451 19 H 0.295 0.705 20 H 0.149 0.851 21 H 0.186 0.814 22 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.307 -1.780 6.309 12.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.364 5.364 2 C -0.148 4.148 3 Si 0.752 3.248 4 H -0.185 1.185 5 H -0.196 1.196 6 H -0.182 1.182 7 C -0.484 4.484 8 H 0.110 0.890 9 C 0.190 3.810 10 C -0.406 4.406 11 C 0.308 3.692 12 O -0.468 6.468 13 N -0.327 5.327 14 C -0.045 4.045 15 S 0.365 5.635 16 C -0.415 4.415 17 C -0.038 4.038 18 N -0.143 5.143 19 H 0.107 0.893 20 H 0.166 0.834 21 H 0.203 0.797 22 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 8.783 -3.453 5.553 10.950 hybrid contribution 0.995 2.892 0.372 3.081 sum 9.778 -0.561 5.925 11.447 Atomic orbital electron populations 1.69725 1.08019 1.31011 1.27621 1.25977 0.94923 1.01793 0.92101 0.85954 0.80027 0.78793 0.80052 1.18506 1.19565 1.18158 1.19278 0.98149 0.89839 1.41091 0.89000 1.18412 0.92195 0.80072 0.90281 1.22714 1.04694 1.00410 1.12738 1.17287 0.85238 0.84587 0.82071 1.90732 1.27909 1.88420 1.39739 1.68622 1.11846 1.34836 1.17378 1.25361 0.93502 0.89567 0.96059 1.84773 1.24942 1.03625 1.50117 1.24682 1.08521 0.94735 1.13589 1.20701 0.90505 0.98693 0.93856 1.43702 1.23831 1.08320 1.38489 0.89315 0.83381 0.79694 0.80280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -17.97 10.97 55.57 0.61 -17.36 14 2 C 0.08 1.74 5.14 -17.27 -0.09 1.65 14 3 Si 0.93 16.18 29.60 -169.99 -5.03 11.14 14 4 H -0.26 -4.60 7.11 56.52 0.40 -4.20 14 5 H -0.27 -4.64 7.11 56.52 0.40 -4.24 14 6 H -0.26 -4.26 7.11 56.52 0.40 -3.86 14 7 C -0.45 -10.32 8.60 -38.03 -0.33 -10.65 14 8 H 0.09 1.83 7.04 -52.49 -0.37 1.46 14 9 C 0.29 7.23 6.43 -83.18 -0.53 6.69 14 10 C -0.38 -10.73 8.71 -38.19 -0.33 -11.07 14 11 C 0.51 15.28 7.72 -15.77 -0.12 15.16 14 12 O -0.58 -19.11 17.99 4.58 0.08 -19.03 14 13 N -0.58 -15.75 10.44 -14.83 -0.15 -15.90 14 14 C 0.33 7.42 8.33 -88.00 -0.73 6.68 14 15 S 0.12 1.92 23.38 -107.50 -2.51 -0.60 14 16 C -0.28 -3.62 11.13 28.95 0.32 -3.30 14 17 C 0.09 1.49 10.27 -17.10 -0.18 1.31 14 18 N -0.45 -9.77 2.91 -61.24 -0.18 -9.95 14 19 H 0.29 6.39 8.29 -40.82 -0.34 6.05 14 20 H 0.15 4.39 6.19 -52.49 -0.32 4.07 14 21 H 0.19 1.60 8.06 -52.49 -0.42 1.18 14 22 H 0.18 2.37 7.16 -52.49 -0.38 1.99 14 LS Contribution 219.66 15.07 3.31 3.31 Total: -1.00 -32.96 219.66 -6.49 -39.45 By element: Atomic # 1 Polarization: 3.07 SS G_CDS: -0.63 Total: 2.44 kcal Atomic # 6 Polarization: 8.48 SS G_CDS: -1.99 Total: 6.49 kcal Atomic # 7 Polarization: -43.48 SS G_CDS: 0.28 Total: -43.21 kcal Atomic # 8 Polarization: -19.11 SS G_CDS: 0.08 Total: -19.03 kcal Atomic # 14 Polarization: 16.18 SS G_CDS: -5.03 Total: 11.14 kcal Atomic # 16 Polarization: 1.92 SS G_CDS: -2.51 Total: -0.60 kcal Total LS contribution 3.31 Total: 3.31 kcal Total: -32.96 -6.49 -39.45 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260390140.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.591 kcal (2) G-P(sol) polarization free energy of solvation -32.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.449 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds