Wall clock time and date at job start Mon Mar 30 2020 02:47:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30524 * 1 3 3 Si 1.86801 * 119.99896 * 2 1 4 4 H 1.48496 * 109.47401 * 269.99932 * 3 2 1 5 5 H 1.48509 * 109.47144 * 30.00051 * 3 2 1 6 6 H 1.48504 * 109.47204 * 149.99584 * 3 2 1 7 7 C 1.40457 * 120.00330 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00185 * 197.50329 * 7 2 1 9 9 C 1.40135 * 119.99845 * 17.49773 * 7 2 1 10 10 C 1.38932 * 120.30062 * 25.13086 * 9 7 2 11 11 C 1.41228 * 118.46218 * 180.02562 * 10 9 7 12 12 O 1.22370 * 120.30957 * 179.97438 * 11 10 9 13 13 N 1.33323 * 119.37642 * 359.97167 * 11 10 9 14 14 C 1.32904 * 122.23853 * 359.97438 * 13 11 10 15 15 S 1.76509 * 129.26792 * 180.02562 * 14 13 11 16 16 C 1.75719 * 90.70688 * 179.77743 * 15 14 13 17 17 C 1.31265 * 109.62128 * 0.32732 * 16 15 14 18 18 N 1.35410 * 121.57929 * 0.02562 * 14 13 11 19 19 H 0.97008 * 120.00326 * 359.97438 * 1 2 3 20 20 H 1.07997 * 120.76255 * 359.97438 * 10 9 7 21 21 H 1.08001 * 125.18824 * 180.19526 * 16 15 14 22 22 H 1.08000 * 121.68789 * 179.87025 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3052 0.0000 0.0000 3 14 2.2392 1.6178 0.0000 4 1 2.4868 2.0465 -1.4000 5 1 1.4366 2.6527 0.7001 6 1 3.5368 1.4403 0.7001 7 6 2.0076 -1.2164 0.0005 8 1 3.0501 -1.2379 0.2818 9 6 1.3556 -2.4021 -0.3638 10 6 0.2434 -2.3633 -1.1955 11 6 -0.3840 -3.5815 -1.5375 12 8 -1.3663 -3.5867 -2.2673 13 7 0.1039 -4.7257 -1.0578 14 6 1.1684 -4.7647 -0.2631 15 16 1.9647 -6.1588 0.4704 16 6 3.1483 -5.1083 1.2342 17 6 2.8935 -3.8585 0.9243 18 7 1.8196 -3.6362 0.1058 19 1 -0.4851 0.8401 0.0004 20 1 -0.1332 -1.4233 -1.5709 21 1 3.9601 -5.4402 1.8644 22 1 3.5029 -3.0469 1.2935 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260390140.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:51 Heat of formation + Delta-G solvation = 2.889970 kcal Electronic energy + Delta-G solvation = -12574.772933 eV Core-core repulsion = 10220.924252 eV Total energy + Delta-G solvation = -2353.848682 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 222.020 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -42.34586 -39.11010 -36.69499 -35.54461 -33.21015 -30.68458 -28.46968 -26.28547 -23.97689 -22.55671 -20.45550 -18.98980 -18.60851 -17.72844 -17.12796 -16.83312 -15.92596 -15.35228 -14.83310 -14.71803 -14.26018 -13.88685 -13.70009 -13.18453 -12.76570 -12.18975 -12.02094 -11.87980 -11.84198 -11.71196 -11.14062 -9.83958 -9.60114 -9.00731 -8.74804 -7.03068 -0.22041 -0.13012 0.54018 0.78875 1.17426 1.35818 1.53754 1.57755 1.74516 2.08246 2.60914 3.35779 3.78579 3.88751 4.43410 4.61430 4.74181 4.86545 5.07682 5.14533 5.50151 5.72776 6.05454 6.26556 6.47091 7.13307 7.60381 7.94048 Molecular weight = 222.02amu Principal moments of inertia in cm(-1) A = 0.031598 B = 0.011483 C = 0.008627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.928190 B = 2437.751571 C = 3244.846563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.780 5.780 2 C 0.032 3.968 3 Si 1.012 2.988 4 H -0.266 1.266 5 H -0.267 1.267 6 H -0.228 1.228 7 C -0.443 4.443 8 H 0.132 0.868 9 C 0.286 3.714 10 C -0.434 4.434 11 C 0.484 3.516 12 O -0.651 6.651 13 N -0.632 5.632 14 C 0.301 3.699 15 S 0.197 5.803 16 C -0.223 4.223 17 C 0.049 3.951 18 N -0.455 5.455 19 H 0.303 0.697 20 H 0.118 0.882 21 H 0.249 0.751 22 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.980 -1.706 9.402 17.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.402 5.402 2 C -0.191 4.191 3 Si 0.829 3.171 4 H -0.191 1.191 5 H -0.192 1.192 6 H -0.150 1.150 7 C -0.472 4.472 8 H 0.150 0.850 9 C 0.185 3.815 10 C -0.462 4.462 11 C 0.289 3.711 12 O -0.547 6.547 13 N -0.382 5.382 14 C -0.070 4.070 15 S 0.443 5.557 16 C -0.360 4.360 17 C -0.077 4.077 18 N -0.147 5.147 19 H 0.115 0.885 20 H 0.136 0.864 21 H 0.265 0.735 22 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 13.547 -3.445 8.729 16.480 hybrid contribution -0.189 2.798 -0.331 2.824 sum 13.358 -0.647 8.398 15.792 Atomic orbital electron populations 1.69846 1.10549 1.32775 1.27003 1.27331 0.95440 1.05899 0.90455 0.84748 0.79475 0.72998 0.79865 1.19094 1.19187 1.14961 1.19992 0.99669 0.89270 1.38310 0.85025 1.18484 0.91151 0.82336 0.89513 1.22329 1.08246 0.98687 1.16893 1.17574 0.85065 0.86297 0.82160 1.90615 1.31004 1.89536 1.43562 1.68477 1.15144 1.33570 1.21006 1.26579 0.92773 0.92672 0.94960 1.84696 1.23356 1.00258 1.47423 1.25577 1.07324 0.92699 1.10441 1.21325 0.90223 1.01247 0.94930 1.43823 1.25124 1.07044 1.38687 0.88503 0.86404 0.73462 0.76927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -38.89 10.97 21.91 0.24 -38.65 14 2 C 0.03 1.40 5.14 85.43 0.44 1.84 14 3 Si 1.01 30.97 29.60 68.60 2.03 33.00 14 4 H -0.27 -8.40 7.11 99.48 0.71 -7.69 14 5 H -0.27 -8.01 7.11 99.48 0.71 -7.30 14 6 H -0.23 -5.90 7.11 99.48 0.71 -5.19 14 7 C -0.44 -19.47 8.60 23.27 0.20 -19.27 14 8 H 0.13 4.62 7.04 -2.91 -0.02 4.60 14 9 C 0.29 14.57 6.43 38.47 0.25 14.82 14 10 C -0.43 -26.65 8.71 23.17 0.20 -26.45 14 11 C 0.48 31.97 7.72 85.20 0.66 32.62 14 12 O -0.65 -47.74 17.99 -6.54 -0.12 -47.86 14 13 N -0.63 -36.50 10.44 -319.57 -3.33 -39.83 14 14 C 0.30 13.58 8.33 179.43 1.49 15.07 14 15 S 0.20 5.50 23.38 -56.49 -1.32 4.18 14 16 C -0.22 -4.33 11.13 67.52 0.75 -3.58 14 17 C 0.05 1.34 10.27 83.61 0.86 2.20 14 18 N -0.46 -19.21 2.91 -347.67 -1.01 -20.22 14 19 H 0.30 13.52 8.29 -92.70 -0.77 12.75 14 20 H 0.12 7.70 6.19 -2.91 -0.02 7.68 14 21 H 0.25 1.82 8.06 -2.91 -0.02 1.79 14 22 H 0.21 4.26 7.16 -2.91 -0.02 4.24 14 Total: -1.00 -83.85 219.66 2.60 -81.24 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: 1.27 Total: 10.88 kcal Atomic # 6 Polarization: 12.41 SS G_CDS: 4.85 Total: 17.26 kcal Atomic # 7 Polarization: -94.60 SS G_CDS: -4.11 Total: -98.71 kcal Atomic # 8 Polarization: -47.74 SS G_CDS: -0.12 Total: -47.86 kcal Atomic # 14 Polarization: 30.97 SS G_CDS: 2.03 Total: 33.00 kcal Atomic # 16 Polarization: 5.50 SS G_CDS: -1.32 Total: 4.18 kcal Total: -83.85 2.60 -81.24 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260390140.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.130 kcal (2) G-P(sol) polarization free energy of solvation -83.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.240 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds