Wall clock time and date at job start Mon Mar 30 2020 02:48:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31562 * 1 3 3 Si 1.86795 * 120.00230 * 2 1 4 4 H 1.48501 * 109.47088 * 270.27634 * 3 2 1 5 5 H 1.48505 * 109.47015 * 30.27550 * 3 2 1 6 6 H 1.48498 * 109.47362 * 150.27976 * 3 2 1 7 7 C 1.38815 * 119.99595 * 180.28071 * 2 1 3 8 8 H 1.08000 * 119.99641 * 359.71919 * 7 2 1 9 9 N 1.36967 * 119.99832 * 179.72301 * 7 2 1 10 10 C 1.38575 * 119.99963 * 179.97438 * 9 7 2 11 11 N 1.32944 * 118.54968 * 359.97438 * 10 9 7 12 12 C 1.32184 * 120.60152 * 179.97438 * 11 10 9 13 13 C 1.38675 * 118.63481 * 0.02562 * 12 11 10 14 14 S 1.76378 * 134.59725 * 179.97438 * 13 12 11 15 15 N 1.69646 * 95.43362 * 180.02562 * 14 13 12 16 16 C 1.29029 * 108.42371 * 359.97438 * 15 14 13 17 17 C 1.40220 * 118.85066 * 0.02562 * 16 15 14 18 18 N 1.31619 * 118.55491 * 179.73282 * 10 9 7 19 19 H 0.97000 * 119.99965 * 359.72481 * 1 2 3 20 20 H 0.97005 * 120.00129 * 359.97438 * 9 7 2 21 21 H 1.08003 * 120.68454 * 179.97438 * 12 11 10 22 22 H 1.08003 * 120.57374 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 2.4913 2.0497 -1.4001 5 1 1.4500 2.6509 0.7059 6 1 3.5501 1.4384 0.6941 7 6 2.0096 -1.2022 -0.0059 8 1 1.4695 -2.1374 -0.0059 9 7 3.3793 -1.2022 -0.0116 10 6 4.0721 -2.4024 -0.0170 11 7 3.3784 -3.5365 -0.0158 12 6 3.9979 -4.7042 -0.0213 13 6 5.3845 -4.7208 -0.0277 14 16 6.6077 -5.9915 -0.0356 15 7 7.9358 -4.9360 -0.0390 16 6 7.4934 -3.7240 -0.0351 17 6 6.1077 -3.5095 -0.0286 18 7 5.3878 -2.3692 -0.0278 19 1 -0.4850 0.8400 0.0040 20 1 3.8643 -0.3622 -0.0119 21 1 3.4357 -5.6263 -0.0200 22 1 8.1786 -2.8891 -0.0359 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260416209.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:27 Heat of formation + Delta-G solvation = 76.760910 kcal Electronic energy + Delta-G solvation = -12137.471144 eV Core-core repulsion = 9819.118498 eV Total energy + Delta-G solvation = -2318.352646 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 222.027 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.91488 -38.82956 -36.94843 -34.45497 -33.89927 -31.30232 -27.21337 -26.31509 -24.72909 -22.52812 -20.72009 -19.46755 -18.43301 -17.96629 -16.77504 -16.54065 -16.40235 -15.65977 -15.06349 -14.61659 -14.45795 -14.26247 -13.27565 -13.22828 -12.56602 -12.34997 -12.09835 -11.78201 -11.76925 -11.52561 -10.97176 -10.12462 -10.09970 -8.84979 -8.54174 -5.93757 -0.74542 0.11458 0.44194 0.80966 1.20191 1.28395 1.33128 1.36422 2.11289 2.24352 2.65509 3.08708 3.19049 3.47197 3.78006 4.06239 4.47527 4.66552 5.03076 5.27544 5.40940 5.78664 6.16430 6.41768 6.77031 7.11605 7.60765 8.59404 Molecular weight = 222.03amu Principal moments of inertia in cm(-1) A = 0.064725 B = 0.007237 C = 0.006524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 432.494056 B = 3868.044811 C = 4290.695305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C -0.004 4.004 3 Si 0.947 3.053 4 H -0.259 1.259 5 H -0.266 1.266 6 H -0.249 1.249 7 C -0.301 4.301 8 H 0.097 0.903 9 N -0.537 5.537 10 C 0.503 3.497 11 N -0.554 5.554 12 C 0.258 3.742 13 C -0.365 4.365 14 S 0.246 5.754 15 N -0.419 5.419 16 C 0.122 3.878 17 C 0.157 3.843 18 N -0.576 5.576 19 H 0.284 0.716 20 H 0.398 0.602 21 H 0.206 0.794 22 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.493 -6.135 -0.025 13.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.206 4.206 3 Si 0.769 3.231 4 H -0.184 1.184 5 H -0.191 1.191 6 H -0.173 1.173 7 C -0.431 4.431 8 H 0.115 0.885 9 N -0.154 5.154 10 C 0.146 3.854 11 N -0.277 5.277 12 C 0.076 3.924 13 C -0.496 4.496 14 S 0.391 5.609 15 N -0.234 5.234 16 C -0.089 4.089 17 C 0.005 3.995 18 N -0.308 5.308 19 H 0.094 0.906 20 H 0.235 0.765 21 H 0.222 0.778 22 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 11.569 -6.854 -0.036 13.448 hybrid contribution -0.399 2.015 0.016 2.054 sum 11.171 -4.839 -0.020 12.174 Atomic orbital electron populations 1.69778 1.07291 1.29572 1.47852 1.25823 0.96397 1.01926 0.96464 0.85571 0.79225 0.78411 0.79913 1.18356 1.19068 1.17332 1.19345 0.79172 0.96567 1.48050 0.88485 1.40660 1.05669 1.03219 1.65869 1.18958 0.84645 0.86828 0.94945 1.68382 1.39870 0.98349 1.21119 1.22754 0.88338 0.96191 0.85132 1.24647 1.01612 1.00327 1.23013 1.84246 0.89886 1.10561 1.76182 1.76143 1.24462 1.04909 1.17910 1.22460 0.91882 0.96238 0.98333 1.20320 0.94418 0.88421 0.96316 1.67560 1.05615 1.29869 1.27731 0.90599 0.76452 0.77753 0.76606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.56 13.96 21.65 0.30 -50.25 14 2 C 0.00 -0.19 5.50 84.87 0.47 0.28 14 3 Si 0.95 38.45 27.73 68.60 1.90 40.35 14 4 H -0.26 -10.16 7.11 99.48 0.71 -9.45 14 5 H -0.27 -10.51 7.11 99.48 0.71 -9.80 14 6 H -0.25 -9.37 6.52 99.48 0.65 -8.72 14 7 C -0.30 -16.17 10.16 84.03 0.85 -15.32 14 8 H 0.10 5.81 7.24 -2.91 -0.02 5.79 14 9 N -0.54 -25.72 5.24 -194.61 -1.02 -26.74 14 10 C 0.50 22.98 8.34 261.59 2.18 25.16 14 11 N -0.55 -24.31 9.06 -198.15 -1.80 -26.10 14 12 C 0.26 8.78 11.33 84.74 0.96 9.74 14 13 C -0.36 -11.80 6.76 23.07 0.16 -11.65 14 14 S 0.25 6.32 23.91 -56.49 -1.35 4.97 14 15 N -0.42 -11.36 11.96 -59.63 -0.71 -12.08 14 16 C 0.12 3.37 11.21 85.59 0.96 4.32 14 17 C 0.16 5.46 7.12 39.86 0.28 5.74 14 18 N -0.58 -23.61 10.51 -191.87 -2.02 -25.63 14 19 H 0.28 14.53 8.31 -92.71 -0.77 13.76 14 20 H 0.40 17.53 5.86 -92.70 -0.54 16.99 14 21 H 0.21 5.03 8.06 -2.91 -0.02 5.01 14 22 H 0.22 4.48 8.06 -2.91 -0.02 4.46 14 Total: -1.00 -61.03 221.06 1.85 -59.17 By element: Atomic # 1 Polarization: 17.35 SS G_CDS: 0.68 Total: 18.03 kcal Atomic # 6 Polarization: 12.41 SS G_CDS: 5.86 Total: 18.27 kcal Atomic # 7 Polarization: -135.56 SS G_CDS: -5.24 Total: -140.80 kcal Atomic # 14 Polarization: 38.45 SS G_CDS: 1.90 Total: 40.35 kcal Atomic # 16 Polarization: 6.32 SS G_CDS: -1.35 Total: 4.97 kcal Total: -61.03 1.85 -59.17 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260416209.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.934 kcal (2) G-P(sol) polarization free energy of solvation -61.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.173 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds